RNA–Protein interactions for RNA: ENST00000490081.5

HDAC1-210, Transcript of histone deacetylase 1, humanhuman

TSL 3

Gene HDAC1, Length 1,047 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-210ENST00000490081 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.15■□□□□ 0.5
HDAC1-210ENST00000490081 ZFYVE9O95405 1425 aa18.15■□□□□ 0.5
HDAC1-210ENST00000490081 NCKAP5LQ9HCH0 1330 aa18.14■□□□□ 0.49
HDAC1-210ENST00000490081 ANKLE2Q86XL3 938 aa18.13■□□□□ 0.49
HDAC1-210ENST00000490081 TIMELESSQ9UNS1 1208 aa18.13■□□□□ 0.49
HDAC1-210ENST00000490081 CHGAP10645 457 aaKnown RBP18.12■□□□□ 0.49
HDAC1-210ENST00000490081 CCER1Q8TC90 406 aaPredicted RBP18.12■□□□□ 0.49
HDAC1-210ENST00000490081 SIN3AQ96ST3 1273 aa18.11■□□□□ 0.49
HDAC1-210ENST00000490081 EID1Q9Y6B2 187 aa18.11■□□□□ 0.49
HDAC1-210ENST00000490081 MED14O60244 1454 aa18.11■□□□□ 0.49
HDAC1-210ENST00000490081 PPLO60437 1756 aa18.11■□□□□ 0.49
HDAC1-210ENST00000490081 IFT172Q9UG01 1749 aa18.1■□□□□ 0.49
HDAC1-210ENST00000490081 NEXMIFQ5QGS0 1516 aa18.1■□□□□ 0.49
HDAC1-210ENST00000490081 IQSEC2Q5JU85 1478 aa18.1■□□□□ 0.49
HDAC1-210ENST00000490081 RIMS2Q9UQ26 1411 aa18.1■□□□□ 0.49
HDAC1-210ENST00000490081 VGFO15240 615 aaPredicted RBP18.1■□□□□ 0.49
HDAC1-210ENST00000490081 TXNDC2Q86VQ3 553 aa18.09■□□□□ 0.49
HDAC1-210ENST00000490081 POLR1AO95602 1720 aaPredicted RBP18.09■□□□□ 0.49
HDAC1-210ENST00000490081 SCAF11Q99590 1463 aaKnown RBP18.08■□□□□ 0.49
HDAC1-210ENST00000490081 LTKP29376 864 aa18.08■□□□□ 0.48
HDAC1-210ENST00000490081 ZNF326Q5BKZ1 582 aaKnown RBP18.08■□□□□ 0.48
HDAC1-210ENST00000490081 RGL3Q3MIN7 710 aa18.07■□□□□ 0.48
HDAC1-210ENST00000490081 SENP3Q9H4L4 574 aaPredicted RBP18.07■□□□□ 0.48
HDAC1-210ENST00000490081 MYOM2P54296 1465 aa18.06■□□□□ 0.48
HDAC1-210ENST00000490081 PLEKHG1Q9ULL1 1385 aa18.05■□□□□ 0.48
HDAC1-210ENST00000490081 ZNF335Q9H4Z2 1342 aaPredicted RBP18.05■□□□□ 0.48
HDAC1-210ENST00000490081 NRXN1Q9ULB1 1477 aa18.05■□□□□ 0.48
HDAC1-210ENST00000490081 NEUROD1Q13562 356 aa18.04■□□□□ 0.48
HDAC1-210ENST00000490081 NPHP4O75161 1426 aaPredicted RBP18.02■□□□□ 0.48
HDAC1-210ENST00000490081 L3MBTL2Q969R5 705 aa18.02■□□□□ 0.48
HDAC1-210ENST00000490081 SETBP1Q9Y6X0 1596 aa18.01■□□□□ 0.47
HDAC1-210ENST00000490081 DCAF11Q8TEB1 546 aa18.01■□□□□ 0.47
HDAC1-210ENST00000490081 IQGAP1P46940 1657 aa18■□□□□ 0.47
HDAC1-210ENST00000490081 TBX22Q9Y458 520 aa18■□□□□ 0.47
HDAC1-210ENST00000490081 TONSLQ96HA7 1378 aa18■□□□□ 0.47
HDAC1-210ENST00000490081 PPP1R15AO75807 674 aaPredicted RBP17.99■□□□□ 0.47
HDAC1-210ENST00000490081 ADGRF5Q8IZF2 1346 aa17.98■□□□□ 0.47
HDAC1-210ENST00000490081 PIK3C2GO75747 1445 aa17.98■□□□□ 0.47
HDAC1-210ENST00000490081 DIP2AQ14689 1571 aa17.98■□□□□ 0.47
HDAC1-210ENST00000490081 NRXN3Q9Y4C0 1643 aa17.97■□□□□ 0.47
HDAC1-210ENST00000490081 ADAMTS13Q76LX8 1427 aa17.97■□□□□ 0.47
HDAC1-210ENST00000490081 C14orf93Q9H972 538 aaKnown RBP17.96■□□□□ 0.47
HDAC1-210ENST00000490081 PIK3R4Q99570 1358 aa17.95■□□□□ 0.46
HDAC1-210ENST00000490081 NUTM2DQ5VT03 806 aaPredicted RBP17.95■□□□□ 0.46
HDAC1-210ENST00000490081 KIAA1210Q9ULL0 1709 aa17.95■□□□□ 0.46
HDAC1-210ENST00000490081 LAMC1P11047 1609 aa17.94■□□□□ 0.46
HDAC1-210ENST00000490081 PRAG1Q86YV5 1406 aa17.94■□□□□ 0.46
HDAC1-210ENST00000490081 KDM2AQ9Y2K7 1162 aa17.93■□□□□ 0.46
HDAC1-210ENST00000490081 ALKQ9UM73 1620 aa17.93■□□□□ 0.46
HDAC1-210ENST00000490081 SETD1AO15047 1707 aaKnown RBP17.92■□□□□ 0.46
HDAC1-210ENST00000490081 CPS1P31327 1500 aa17.91■□□□□ 0.46
HDAC1-210ENST00000490081 CHD2O14647 1828 aaKnown RBP17.89■□□□□ 0.45
HDAC1-210ENST00000490081 SLC26A8Q96RN1 970 aa17.89■□□□□ 0.45
HDAC1-210ENST00000490081 BCANQ96GW7 911 aa17.88■□□□□ 0.45
HDAC1-210ENST00000490081 UBAP1LF5GYI3 381 aa17.87■□□□□ 0.45
HDAC1-210ENST00000490081 PHF23Q9BUL5 403 aaPredicted RBP17.87■□□□□ 0.45
HDAC1-210ENST00000490081 KCNA6P17658 529 aa17.86■□□□□ 0.45
HDAC1-210ENST00000490081 NBPF8Q3BBV2 869 aa17.86■□□□□ 0.45
HDAC1-210ENST00000490081 CFAP70Q5T0N1 1121 aa17.86■□□□□ 0.45
HDAC1-210ENST00000490081 METP08581 1390 aa17.86■□□□□ 0.45
HDAC1-210ENST00000490081 TRPM1Q7Z4N2 1603 aa17.86■□□□□ 0.45
HDAC1-210ENST00000490081 STRCP1A6NGW2 1772 aa17.85■□□□□ 0.45
HDAC1-210ENST00000490081 ADGRB1O14514 1584 aa17.85■□□□□ 0.45
HDAC1-210ENST00000490081 SIRT1Q96EB6 747 aa17.85■□□□□ 0.45
HDAC1-210ENST00000490081 NWD1Q149M9 1564 aa17.84■□□□□ 0.45
HDAC1-210ENST00000490081 GPRASP1Q5JY77 1395 aa17.84■□□□□ 0.45
HDAC1-210ENST00000490081 ABCC11Q96J66 1382 aa17.83■□□□□ 0.45
HDAC1-210ENST00000490081 DISP3Q9P2K9 1392 aa17.83■□□□□ 0.45
HDAC1-210ENST00000490081 TECPR2O15040 1411 aa17.82■□□□□ 0.44
HDAC1-210ENST00000490081 LRPPRCP42704 1394 aaKnown RBP17.82■□□□□ 0.44
HDAC1-210ENST00000490081 ASXL1Q8IXJ9 1541 aa17.82■□□□□ 0.44
HDAC1-210ENST00000490081 RALGAPBQ86X10 1494 aa17.82■□□□□ 0.44
HDAC1-210ENST00000490081 PTPRUQ92729 1446 aa17.81■□□□□ 0.44
HDAC1-210ENST00000490081 XRN1Q8IZH2 1706 aaKnown RBP17.81■□□□□ 0.44
HDAC1-210ENST00000490081 ILDR2Q71H61 639 aa17.81■□□□□ 0.44
HDAC1-210ENST00000490081 ZEB1P37275 1124 aaPredicted RBP17.8■□□□□ 0.44
HDAC1-210ENST00000490081 AMOTL2Q9Y2J4 779 aa17.8■□□□□ 0.44
HDAC1-210ENST00000490081 KNDC1Q76NI1 1749 aa17.8■□□□□ 0.44
HDAC1-210ENST00000490081 NKTRP30414 1462 aaKnown RBP17.8■□□□□ 0.44
HDAC1-210ENST00000490081 YTHDC2Q9H6S0 1430 aaKnown RBP17.8■□□□□ 0.44
HDAC1-210ENST00000490081 NBPF1Q3BBV0 1214 aa17.79■□□□□ 0.44
HDAC1-210ENST00000490081 NCOA3Q9Y6Q9 1424 aa17.79■□□□□ 0.44
HDAC1-210ENST00000490081 LRRC7Q96NW7 1537 aa17.78■□□□□ 0.44
HDAC1-210ENST00000490081 DLC1Q96QB1 1528 aa17.78■□□□□ 0.44
HDAC1-210ENST00000490081 TMEM132EQ6IEE7 984 aa17.78■□□□□ 0.44
HDAC1-210ENST00000490081 PTCH1Q13635 1447 aa17.77■□□□□ 0.44
HDAC1-210ENST00000490081 FAM135BQ49AJ0 1406 aa17.77■□□□□ 0.44
HDAC1-210ENST00000490081 TOM1O60784 492 aa17.76■□□□□ 0.43
HDAC1-210ENST00000490081 ROCK2O75116 1388 aaKnown RBP17.76■□□□□ 0.43
HDAC1-210ENST00000490081 HSPA1LP34931 641 aa17.73■□□□□ 0.43
HDAC1-210ENST00000490081 PIP4K2BP78356 416 aa17.73■□□□□ 0.43
HDAC1-210ENST00000490081 ROBO2Q9HCK4 1378 aa17.71■□□□□ 0.43
HDAC1-210ENST00000490081 XIRP1Q702N8 1843 aaKnown RBP17.71■□□□□ 0.43
HDAC1-210ENST00000490081 CARD11Q9BXL7 1154 aa17.71■□□□□ 0.43
HDAC1-210ENST00000490081 ARHGEF28Q8N1W1 1705 aaKnown RBP17.7■□□□□ 0.42
HDAC1-210ENST00000490081 PROSER2Q86WR7 435 aaPredicted RBP17.7■□□□□ 0.42
HDAC1-210ENST00000490081 STK26Q9P289 416 aa17.69■□□□□ 0.42
HDAC1-210ENST00000490081 TRAK1Q9UPV9 953 aa17.69■□□□□ 0.42
HDAC1-210ENST00000490081 SCAF1Q9H7N4 1312 aaKnown RBP17.68■□□□□ 0.42
HDAC1-210ENST00000490081 EIF3AQ14152 1382 aaKnown RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms