RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 ZFYVE9O95405 1425 aa25.68■■□□□ 1.7
MDC1-206ENST00000489540 SPHKAPQ2M3C7 1700 aa25.67■■□□□ 1.7
MDC1-206ENST00000489540 BCANQ96GW7 911 aa25.67■■□□□ 1.7
MDC1-206ENST00000489540 IQGAP1P46940 1657 aa25.67■■□□□ 1.7
MDC1-206ENST00000489540 ZNF326Q5BKZ1 582 aaKnown RBP25.66■■□□□ 1.7
MDC1-206ENST00000489540 ILDR1Q86SU0 546 aaPredicted RBP25.64■■□□□ 1.7
MDC1-206ENST00000489540 PLEKHG1Q9ULL1 1385 aa25.64■■□□□ 1.69
MDC1-206ENST00000489540 SLC26A8Q96RN1 970 aa25.63■■□□□ 1.69
MDC1-206ENST00000489540 NUTM2DQ5VT03 806 aaPredicted RBP25.62■■□□□ 1.69
MDC1-206ENST00000489540 IQSEC2Q5JU85 1478 aa25.59■■□□□ 1.69
MDC1-206ENST00000489540 CPS1P31327 1500 aa25.59■■□□□ 1.69
MDC1-206ENST00000489540 CLTCL1P53675 1640 aa25.59■■□□□ 1.69
MDC1-206ENST00000489540 CCDC144AA2RUR9 1427 aa25.59■■□□□ 1.69
MDC1-206ENST00000489540 TBX22Q9Y458 520 aa25.58■■□□□ 1.69
MDC1-206ENST00000489540 RPGRIP1LQ68CZ1 1315 aa25.57■■□□□ 1.68
MDC1-206ENST00000489540 KCNA6P17658 529 aa25.55■■□□□ 1.68
MDC1-206ENST00000489540 MYO5BQ9ULV0 1848 aa25.55■■□□□ 1.68
MDC1-206ENST00000489540 SENP3Q9H4L4 574 aaPredicted RBP25.54■■□□□ 1.68
MDC1-206ENST00000489540 VGFO15240 615 aaPredicted RBP25.53■■□□□ 1.68
MDC1-206ENST00000489540 TRIM26Q12899 539 aaPredicted RBP25.51■■□□□ 1.67
MDC1-206ENST00000489540 ADAMTS13Q76LX8 1427 aa25.48■■□□□ 1.67
MDC1-206ENST00000489540 RGL3Q3MIN7 710 aa25.47■■□□□ 1.67
MDC1-206ENST00000489540 KIF1BO60333 1816 aa25.47■■□□□ 1.67
MDC1-206ENST00000489540 ANKRD30BQ9BXX2 1392 aa25.47■■□□□ 1.67
MDC1-206ENST00000489540 NEXMIFQ5QGS0 1516 aa25.46■■□□□ 1.67
MDC1-206ENST00000489540 PIK3R4Q99570 1358 aa25.45■■□□□ 1.67
MDC1-206ENST00000489540 SPATA31E1Q6ZUB1 1445 aa25.45■■□□□ 1.66
MDC1-206ENST00000489540 LRRC7Q96NW7 1537 aa25.45■■□□□ 1.66
MDC1-206ENST00000489540 UBAP1LF5GYI3 381 aa25.45■■□□□ 1.66
MDC1-206ENST00000489540 PROSER2Q86WR7 435 aaPredicted RBP25.44■■□□□ 1.66
MDC1-206ENST00000489540 TOM1O60784 492 aa25.43■■□□□ 1.66
MDC1-206ENST00000489540 DIP2AQ14689 1571 aa25.41■■□□□ 1.66
MDC1-206ENST00000489540 SETBP1Q9Y6X0 1596 aa25.39■■□□□ 1.66
MDC1-206ENST00000489540 STRCP1A6NGW2 1772 aa25.39■■□□□ 1.66
MDC1-206ENST00000489540 AMOTL2Q9Y2J4 779 aa25.37■■□□□ 1.65
MDC1-206ENST00000489540 TMEM94Q12767 1356 aa25.37■■□□□ 1.65
MDC1-206ENST00000489540 NKTRP30414 1462 aaKnown RBP25.37■■□□□ 1.65
MDC1-206ENST00000489540 ADGRF5Q8IZF2 1346 aa25.35■■□□□ 1.65
MDC1-206ENST00000489540 NWD1Q149M9 1564 aa25.34■■□□□ 1.65
MDC1-206ENST00000489540 METP08581 1390 aa25.34■■□□□ 1.65
MDC1-206ENST00000489540 NRXN3Q9Y4C0 1643 aa25.32■■□□□ 1.64
MDC1-206ENST00000489540 RBM33Q96EV2 1170 aaKnown RBP25.31■■□□□ 1.64
MDC1-206ENST00000489540 PTPRUQ92729 1446 aa25.31■■□□□ 1.64
MDC1-206ENST00000489540 NCOA3Q9Y6Q9 1424 aa25.3■■□□□ 1.64
MDC1-206ENST00000489540 CHD2O14647 1828 aaKnown RBP25.29■■□□□ 1.64
MDC1-206ENST00000489540 PIP4K2BP78356 416 aa25.29■■□□□ 1.64
MDC1-206ENST00000489540 STAC3Q96MF2 364 aa25.29■■□□□ 1.64
MDC1-206ENST00000489540 PPLO60437 1756 aa25.28■■□□□ 1.64
MDC1-206ENST00000489540 SCAF1Q9H7N4 1312 aaKnown RBP25.26■■□□□ 1.63
MDC1-206ENST00000489540 MSH6P52701 1360 aa25.26■■□□□ 1.63
MDC1-206ENST00000489540 C14orf37Q86TY3 774 aa25.25■■□□□ 1.63
MDC1-206ENST00000489540 ALKQ9UM73 1620 aa25.24■■□□□ 1.63
MDC1-206ENST00000489540 DCAF11Q8TEB1 546 aa25.23■■□□□ 1.63
MDC1-206ENST00000489540 C19orf44Q9H6X5 657 aa25.23■■□□□ 1.63
MDC1-206ENST00000489540 C14orf93Q9H972 538 aaKnown RBP25.22■■□□□ 1.63
MDC1-206ENST00000489540 PIK3C2GO75747 1445 aa25.22■■□□□ 1.63
MDC1-206ENST00000489540 KDM2AQ9Y2K7 1162 aa25.21■■□□□ 1.63
MDC1-206ENST00000489540 MYOM2P54296 1465 aa25.21■■□□□ 1.63
MDC1-206ENST00000489540 NRXN1Q9ULB1 1477 aa25.19■■□□□ 1.62
MDC1-206ENST00000489540 DHX57Q6P158 1386 aaKnown RBP25.18■■□□□ 1.62
MDC1-206ENST00000489540 IFT172Q9UG01 1749 aa25.18■■□□□ 1.62
MDC1-206ENST00000489540 XIRP1Q702N8 1843 aaKnown RBP25.17■■□□□ 1.62
MDC1-206ENST00000489540 CFAP70Q5T0N1 1121 aa25.17■■□□□ 1.62
MDC1-206ENST00000489540 CADPS2Q86UW7 1296 aa25.17■■□□□ 1.62
MDC1-206ENST00000489540 XRN1Q8IZH2 1706 aaKnown RBP25.16■■□□□ 1.62
MDC1-206ENST00000489540 ATF3P18847 181 aa25.16■■□□□ 1.62
MDC1-206ENST00000489540 TMEM132EQ6IEE7 984 aa25.16■■□□□ 1.62
MDC1-206ENST00000489540 SLAIN2Q9P270 581 aa25.16■■□□□ 1.62
MDC1-206ENST00000489540 PTCH1Q13635 1447 aa25.15■■□□□ 1.62
MDC1-206ENST00000489540 PRAG1Q86YV5 1406 aa25.15■■□□□ 1.62
MDC1-206ENST00000489540 STK26Q9P289 416 aa25.13■■□□□ 1.61
MDC1-206ENST00000489540 LRPPRCP42704 1394 aaKnown RBP25.13■■□□□ 1.61
MDC1-206ENST00000489540 ROBO2Q9HCK4 1378 aa25.13■■□□□ 1.61
MDC1-206ENST00000489540 FAM135BQ49AJ0 1406 aa25.13■■□□□ 1.61
MDC1-206ENST00000489540 SETD1AO15047 1707 aaKnown RBP25.12■■□□□ 1.61
MDC1-206ENST00000489540 ABCC11Q96J66 1382 aa25.12■■□□□ 1.61
MDC1-206ENST00000489540 HSPA1LP34931 641 aa25.12■■□□□ 1.61
MDC1-206ENST00000489540 SIN3AQ96ST3 1273 aa25.12■■□□□ 1.61
MDC1-206ENST00000489540 SIRT1Q96EB6 747 aa25.1■■□□□ 1.61
MDC1-206ENST00000489540 NEUROD1Q13562 356 aa25.09■■□□□ 1.61
MDC1-206ENST00000489540 DCCP43146 1447 aa25.08■■□□□ 1.61
MDC1-206ENST00000489540 TECPR2O15040 1411 aa25.07■■□□□ 1.6
MDC1-206ENST00000489540 YTHDC2Q9H6S0 1430 aaKnown RBP25.07■■□□□ 1.6
MDC1-206ENST00000489540 PCGF6Q9BYE7 350 aa25.07■■□□□ 1.6
MDC1-206ENST00000489540 ADGRL3Q9HAR2 1447 aa25.07■■□□□ 1.6
MDC1-206ENST00000489540 WAPLQ7Z5K2 1190 aa25.04■■□□□ 1.6
MDC1-206ENST00000489540 L3MBTL2Q969R5 705 aa25.04■■□□□ 1.6
MDC1-206ENST00000489540 ASXL1Q8IXJ9 1541 aa25.04■■□□□ 1.6
MDC1-206ENST00000489540 LAMC1P11047 1609 aa25.02■■□□□ 1.6
MDC1-206ENST00000489540 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.02■■□□□ 1.6
MDC1-206ENST00000489540 PRAM1Q96QH2 718 aa24.96■■□□□ 1.59
MDC1-206ENST00000489540 POGKQ9P215 609 aa24.96■■□□□ 1.59
MDC1-206ENST00000489540 TRAK1Q9UPV9 953 aa24.96■■□□□ 1.59
MDC1-206ENST00000489540 MST1RQ04912 1400 aa24.96■■□□□ 1.59
MDC1-206ENST00000489540 ADGRB1O14514 1584 aa24.96■■□□□ 1.59
MDC1-206ENST00000489540 PLEKHH1Q9ULM0 1364 aa24.96■■□□□ 1.59
MDC1-206ENST00000489540 BRINP3Q76B58 766 aa24.95■■□□□ 1.59
MDC1-206ENST00000489540 ROBO1Q9Y6N7 1651 aa24.93■■□□□ 1.58
MDC1-206ENST00000489540 KNDC1Q76NI1 1749 aa24.92■■□□□ 1.58
MDC1-206ENST00000489540 DLC1Q96QB1 1528 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms