RNA–Protein interactions for RNA: ENST00000489443.2

LMX1A-204, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

TSL 1 (best)

Gene LMX1A, Length 1,255 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-204ENST00000489443 TRPM2O94759 1503 aa23.38■■□□□ 1.33
LMX1A-204ENST00000489443 PPP1R15AO75807 674 aaPredicted RBP23.37■■□□□ 1.33
LMX1A-204ENST00000489443 BCANQ96GW7 911 aa23.37■■□□□ 1.33
LMX1A-204ENST00000489443 CLTCL1P53675 1640 aa23.37■■□□□ 1.33
LMX1A-204ENST00000489443 NUTM2DQ5VT03 806 aaPredicted RBP23.36■■□□□ 1.33
LMX1A-204ENST00000489443 ZFYVE9O95405 1425 aa23.35■■□□□ 1.33
LMX1A-204ENST00000489443 ZNF326Q5BKZ1 582 aaKnown RBP23.35■■□□□ 1.33
LMX1A-204ENST00000489443 FBXO41Q8TF61 875 aa23.35■■□□□ 1.33
LMX1A-204ENST00000489443 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.34■■□□□ 1.33
LMX1A-204ENST00000489443 KIF1BO60333 1816 aa23.32■■□□□ 1.32
LMX1A-204ENST00000489443 SLC26A8Q96RN1 970 aa23.32■■□□□ 1.32
LMX1A-204ENST00000489443 PLEKHG1Q9ULL1 1385 aa23.28■■□□□ 1.32
LMX1A-204ENST00000489443 HRCP23327 699 aa23.28■■□□□ 1.32
LMX1A-204ENST00000489443 CPS1P31327 1500 aa23.26■■□□□ 1.31
LMX1A-204ENST00000489443 STRCP1A6NGW2 1772 aa23.26■■□□□ 1.31
LMX1A-204ENST00000489443 CCDC144AA2RUR9 1427 aa23.25■■□□□ 1.31
LMX1A-204ENST00000489443 IQSEC2Q5JU85 1478 aa23.24■■□□□ 1.31
LMX1A-204ENST00000489443 NEXMIFQ5QGS0 1516 aa23.19■■□□□ 1.3
LMX1A-204ENST00000489443 KCNA6P17658 529 aa23.19■■□□□ 1.3
LMX1A-204ENST00000489443 RGL3Q3MIN7 710 aa23.19■■□□□ 1.3
LMX1A-204ENST00000489443 TBX22Q9Y458 520 aa23.19■■□□□ 1.3
LMX1A-204ENST00000489443 UBAP1LF5GYI3 381 aa23.17■■□□□ 1.3
LMX1A-204ENST00000489443 LRRC7Q96NW7 1537 aa23.17■■□□□ 1.3
LMX1A-204ENST00000489443 ADAMTS13Q76LX8 1427 aa23.16■■□□□ 1.3
LMX1A-204ENST00000489443 RPGRIP1LQ68CZ1 1315 aa23.16■■□□□ 1.3
LMX1A-204ENST00000489443 VGFO15240 615 aaPredicted RBP23.15■■□□□ 1.3
LMX1A-204ENST00000489443 TRIM26Q12899 539 aaPredicted RBP23.13■■□□□ 1.29
LMX1A-204ENST00000489443 PROSER2Q86WR7 435 aaPredicted RBP23.13■■□□□ 1.29
LMX1A-204ENST00000489443 SPATA31E1Q6ZUB1 1445 aa23.13■■□□□ 1.29
LMX1A-204ENST00000489443 DIP2AQ14689 1571 aa23.13■■□□□ 1.29
LMX1A-204ENST00000489443 CHD2O14647 1828 aaKnown RBP23.12■■□□□ 1.29
LMX1A-204ENST00000489443 ANKRD30BQ9BXX2 1392 aa23.12■■□□□ 1.29
LMX1A-204ENST00000489443 PPLO60437 1756 aa23.12■■□□□ 1.29
LMX1A-204ENST00000489443 SETBP1Q9Y6X0 1596 aa23.11■■□□□ 1.29
LMX1A-204ENST00000489443 NRXN3Q9Y4C0 1643 aa23.11■■□□□ 1.29
LMX1A-204ENST00000489443 RBM33Q96EV2 1170 aaKnown RBP23.1■■□□□ 1.29
LMX1A-204ENST00000489443 NWD1Q149M9 1564 aa23.09■■□□□ 1.29
LMX1A-204ENST00000489443 TOM1O60784 492 aa23.08■■□□□ 1.29
LMX1A-204ENST00000489443 TMEM94Q12767 1356 aa23.08■■□□□ 1.29
LMX1A-204ENST00000489443 PIK3R4Q99570 1358 aa23.08■■□□□ 1.29
LMX1A-204ENST00000489443 XIRP1Q702N8 1843 aaKnown RBP23.08■■□□□ 1.28
LMX1A-204ENST00000489443 SCAF1Q9H7N4 1312 aaKnown RBP23.07■■□□□ 1.28
LMX1A-204ENST00000489443 NKTRP30414 1462 aaKnown RBP23.06■■□□□ 1.28
LMX1A-204ENST00000489443 AMOTL2Q9Y2J4 779 aa23.06■■□□□ 1.28
LMX1A-204ENST00000489443 METP08581 1390 aa23.05■■□□□ 1.28
LMX1A-204ENST00000489443 PIP4K2BP78356 416 aa23.05■■□□□ 1.28
LMX1A-204ENST00000489443 ADGRF5Q8IZF2 1346 aa23.05■■□□□ 1.28
LMX1A-204ENST00000489443 PTPRUQ92729 1446 aa23.04■■□□□ 1.28
LMX1A-204ENST00000489443 IFT172Q9UG01 1749 aa23.02■■□□□ 1.28
LMX1A-204ENST00000489443 ALKQ9UM73 1620 aa23■■□□□ 1.27
LMX1A-204ENST00000489443 C14orf37Q86TY3 774 aa22.99■■□□□ 1.27
LMX1A-204ENST00000489443 SETD1AO15047 1707 aaKnown RBP22.96■■□□□ 1.27
LMX1A-204ENST00000489443 XRN1Q8IZH2 1706 aaKnown RBP22.96■■□□□ 1.27
LMX1A-204ENST00000489443 MSH6P52701 1360 aa22.95■■□□□ 1.26
LMX1A-204ENST00000489443 KDM2AQ9Y2K7 1162 aa22.94■■□□□ 1.26
LMX1A-204ENST00000489443 DCAF11Q8TEB1 546 aa22.93■■□□□ 1.26
LMX1A-204ENST00000489443 PIK3C2GO75747 1445 aa22.92■■□□□ 1.26
LMX1A-204ENST00000489443 NCOA3Q9Y6Q9 1424 aa22.92■■□□□ 1.26
LMX1A-204ENST00000489443 MYOM2P54296 1465 aa22.91■■□□□ 1.26
LMX1A-204ENST00000489443 TMEM132EQ6IEE7 984 aa22.9■■□□□ 1.26
LMX1A-204ENST00000489443 C19orf44Q9H6X5 657 aa22.9■■□□□ 1.26
LMX1A-204ENST00000489443 STK26Q9P289 416 aa22.89■■□□□ 1.25
LMX1A-204ENST00000489443 NRXN1Q9ULB1 1477 aa22.88■■□□□ 1.25
LMX1A-204ENST00000489443 CFAP70Q5T0N1 1121 aa22.88■■□□□ 1.25
LMX1A-204ENST00000489443 C14orf93Q9H972 538 aaKnown RBP22.88■■□□□ 1.25
LMX1A-204ENST00000489443 ATF3P18847 181 aa22.87■■□□□ 1.25
LMX1A-204ENST00000489443 HSPA1LP34931 641 aa22.87■■□□□ 1.25
LMX1A-204ENST00000489443 DHX57Q6P158 1386 aaKnown RBP22.87■■□□□ 1.25
LMX1A-204ENST00000489443 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.86■■□□□ 1.25
LMX1A-204ENST00000489443 SIN3AQ96ST3 1273 aa22.86■■□□□ 1.25
LMX1A-204ENST00000489443 SLAIN2Q9P270 581 aa22.86■■□□□ 1.25
LMX1A-204ENST00000489443 ROBO2Q9HCK4 1378 aa22.86■■□□□ 1.25
LMX1A-204ENST00000489443 NEUROD1Q13562 356 aa22.84■■□□□ 1.25
LMX1A-204ENST00000489443 CADPS2Q86UW7 1296 aa22.84■■□□□ 1.25
LMX1A-204ENST00000489443 STAC3Q96MF2 364 aa22.84■■□□□ 1.25
LMX1A-204ENST00000489443 PTCH1Q13635 1447 aa22.83■■□□□ 1.25
LMX1A-204ENST00000489443 ASXL1Q8IXJ9 1541 aa22.82■■□□□ 1.24
LMX1A-204ENST00000489443 LRPPRCP42704 1394 aaKnown RBP22.82■■□□□ 1.24
LMX1A-204ENST00000489443 LAMC1P11047 1609 aa22.82■■□□□ 1.24
LMX1A-204ENST00000489443 PCGF6Q9BYE7 350 aa22.81■■□□□ 1.24
LMX1A-204ENST00000489443 FAM135BQ49AJ0 1406 aa22.81■■□□□ 1.24
LMX1A-204ENST00000489443 YTHDC2Q9H6S0 1430 aaKnown RBP22.81■■□□□ 1.24
LMX1A-204ENST00000489443 ADGRL3Q9HAR2 1447 aa22.8■■□□□ 1.24
LMX1A-204ENST00000489443 ABCC11Q96J66 1382 aa22.79■■□□□ 1.24
LMX1A-204ENST00000489443 ROBO1Q9Y6N7 1651 aa22.79■■□□□ 1.24
LMX1A-204ENST00000489443 PRAG1Q86YV5 1406 aa22.79■■□□□ 1.24
LMX1A-204ENST00000489443 NALCNQ8IZF0 1738 aa22.79■■□□□ 1.24
LMX1A-204ENST00000489443 WAPLQ7Z5K2 1190 aa22.78■■□□□ 1.24
LMX1A-204ENST00000489443 DCCP43146 1447 aa22.77■■□□□ 1.24
LMX1A-204ENST00000489443 TECPR2O15040 1411 aa22.76■■□□□ 1.23
LMX1A-204ENST00000489443 L3MBTL2Q969R5 705 aa22.75■■□□□ 1.23
LMX1A-204ENST00000489443 KNDC1Q76NI1 1749 aa22.74■■□□□ 1.23
LMX1A-204ENST00000489443 PLEKHH1Q9ULM0 1364 aa22.73■■□□□ 1.23
LMX1A-204ENST00000489443 SIRT1Q96EB6 747 aa22.71■■□□□ 1.23
LMX1A-204ENST00000489443 TRAK1Q9UPV9 953 aa22.71■■□□□ 1.23
LMX1A-204ENST00000489443 MST1RQ04912 1400 aa22.71■■□□□ 1.23
LMX1A-204ENST00000489443 ADGRB1O14514 1584 aa22.71■■□□□ 1.23
LMX1A-204ENST00000489443 SAFB2Q14151 953 aaKnown RBP eCLIP22.7■■□□□ 1.22
LMX1A-204ENST00000489443 BRINP3Q76B58 766 aa22.69■■□□□ 1.22
LMX1A-204ENST00000489443 PRAM1Q96QH2 718 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms