RNA–Protein interactions for RNA: ENST00000489442.5

CCL28-202, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best)

Gene CCL28, Length 1,342 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-202ENST00000489442 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.88■□□□□ 0.77
CCL28-202ENST00000489442 RIMS2Q9UQ26 1411 aa19.88■□□□□ 0.77
CCL28-202ENST00000489442 ZNF326Q5BKZ1 582 aaKnown RBP19.87■□□□□ 0.77
CCL28-202ENST00000489442 MPHOSPH9Q99550 1183 aa19.86■□□□□ 0.77
CCL28-202ENST00000489442 KIF1BO60333 1816 aa19.86■□□□□ 0.77
CCL28-202ENST00000489442 TRPM2O94759 1503 aa19.86■□□□□ 0.77
CCL28-202ENST00000489442 CPS1P31327 1500 aa19.86■□□□□ 0.77
CCL28-202ENST00000489442 FOXD1Q16676 465 aa19.85■□□□□ 0.77
CCL28-202ENST00000489442 NUTM2DQ5VT03 806 aaPredicted RBP19.85■□□□□ 0.77
CCL28-202ENST00000489442 SLC26A8Q96RN1 970 aa19.85■□□□□ 0.77
CCL28-202ENST00000489442 IQSEC2Q5JU85 1478 aa19.85■□□□□ 0.77
CCL28-202ENST00000489442 RAB3GAP2Q9H2M9 1393 aa19.84■□□□□ 0.77
CCL28-202ENST00000489442 ZFYVE9O95405 1425 aa19.84■□□□□ 0.77
CCL28-202ENST00000489442 CLTCL1P53675 1640 aa19.83■□□□□ 0.77
CCL28-202ENST00000489442 PLEKHG1Q9ULL1 1385 aa19.81■□□□□ 0.76
CCL28-202ENST00000489442 STRCP1A6NGW2 1772 aa19.8■□□□□ 0.76
CCL28-202ENST00000489442 UBAP1LF5GYI3 381 aa19.78■□□□□ 0.76
CCL28-202ENST00000489442 CCDC144AA2RUR9 1427 aa19.76■□□□□ 0.75
CCL28-202ENST00000489442 KCNA6P17658 529 aa19.76■□□□□ 0.75
CCL28-202ENST00000489442 HRCP23327 699 aa19.74■□□□□ 0.75
CCL28-202ENST00000489442 TBX22Q9Y458 520 aa19.74■□□□□ 0.75
CCL28-202ENST00000489442 LRRC7Q96NW7 1537 aa19.73■□□□□ 0.75
CCL28-202ENST00000489442 TOM1O60784 492 aa19.73■□□□□ 0.75
CCL28-202ENST00000489442 SCAF1Q9H7N4 1312 aaKnown RBP19.71■□□□□ 0.75
CCL28-202ENST00000489442 VGFO15240 615 aaPredicted RBP19.71■□□□□ 0.75
CCL28-202ENST00000489442 PROSER2Q86WR7 435 aaPredicted RBP19.71■□□□□ 0.75
CCL28-202ENST00000489442 RPGRIP1LQ68CZ1 1315 aa19.7■□□□□ 0.74
CCL28-202ENST00000489442 CHD2O14647 1828 aaKnown RBP19.7■□□□□ 0.74
CCL28-202ENST00000489442 NEXMIFQ5QGS0 1516 aa19.7■□□□□ 0.74
CCL28-202ENST00000489442 RGL3Q3MIN7 710 aa19.7■□□□□ 0.74
CCL28-202ENST00000489442 DIP2AQ14689 1571 aa19.69■□□□□ 0.74
CCL28-202ENST00000489442 ADAMTS13Q76LX8 1427 aa19.68■□□□□ 0.74
CCL28-202ENST00000489442 PIP4K2BP78356 416 aa19.68■□□□□ 0.74
CCL28-202ENST00000489442 XIRP1Q702N8 1843 aaKnown RBP19.66■□□□□ 0.74
CCL28-202ENST00000489442 PPLO60437 1756 aa19.65■□□□□ 0.74
CCL28-202ENST00000489442 RBM33Q96EV2 1170 aaKnown RBP19.65■□□□□ 0.74
CCL28-202ENST00000489442 TMEM94Q12767 1356 aa19.65■□□□□ 0.74
CCL28-202ENST00000489442 PIK3R4Q99570 1358 aa19.65■□□□□ 0.74
CCL28-202ENST00000489442 NKTRP30414 1462 aaKnown RBP19.65■□□□□ 0.74
CCL28-202ENST00000489442 NWD1Q149M9 1564 aa19.65■□□□□ 0.74
CCL28-202ENST00000489442 SETBP1Q9Y6X0 1596 aa19.65■□□□□ 0.74
CCL28-202ENST00000489442 NRXN3Q9Y4C0 1643 aa19.63■□□□□ 0.73
CCL28-202ENST00000489442 C14orf37Q86TY3 774 aa19.62■□□□□ 0.73
CCL28-202ENST00000489442 AMOTL2Q9Y2J4 779 aa19.62■□□□□ 0.73
CCL28-202ENST00000489442 SPATA31E1Q6ZUB1 1445 aa19.61■□□□□ 0.73
CCL28-202ENST00000489442 ANKRD30BQ9BXX2 1392 aa19.59■□□□□ 0.73
CCL28-202ENST00000489442 METP08581 1390 aa19.58■□□□□ 0.72
CCL28-202ENST00000489442 MSH6P52701 1360 aa19.58■□□□□ 0.72
CCL28-202ENST00000489442 PTPRUQ92729 1446 aa19.56■□□□□ 0.72
CCL28-202ENST00000489442 IFT172Q9UG01 1749 aa19.56■□□□□ 0.72
CCL28-202ENST00000489442 ADGRF5Q8IZF2 1346 aa19.56■□□□□ 0.72
CCL28-202ENST00000489442 TRIM26Q12899 539 aaPredicted RBP19.55■□□□□ 0.72
CCL28-202ENST00000489442 ALKQ9UM73 1620 aa19.55■□□□□ 0.72
CCL28-202ENST00000489442 NCOA3Q9Y6Q9 1424 aa19.53■□□□□ 0.72
CCL28-202ENST00000489442 XRN1Q8IZH2 1706 aaKnown RBP19.52■□□□□ 0.72
CCL28-202ENST00000489442 SETD1AO15047 1707 aaKnown RBP19.51■□□□□ 0.71
CCL28-202ENST00000489442 ATF3P18847 181 aa19.51■□□□□ 0.71
CCL28-202ENST00000489442 HSPA1LP34931 641 aa19.51■□□□□ 0.71
CCL28-202ENST00000489442 C19orf44Q9H6X5 657 aa19.51■□□□□ 0.71
CCL28-202ENST00000489442 SLAIN2Q9P270 581 aa19.49■□□□□ 0.71
CCL28-202ENST00000489442 KDM2AQ9Y2K7 1162 aa19.49■□□□□ 0.71
CCL28-202ENST00000489442 CADPS2Q86UW7 1296 aa19.48■□□□□ 0.71
CCL28-202ENST00000489442 DCAF11Q8TEB1 546 aa19.48■□□□□ 0.71
CCL28-202ENST00000489442 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.47■□□□□ 0.71
CCL28-202ENST00000489442 PIK3C2GO75747 1445 aa19.46■□□□□ 0.71
CCL28-202ENST00000489442 STK26Q9P289 416 aa19.46■□□□□ 0.71
CCL28-202ENST00000489442 FAM135BQ49AJ0 1406 aa19.45■□□□□ 0.7
CCL28-202ENST00000489442 TMEM132EQ6IEE7 984 aa19.45■□□□□ 0.7
CCL28-202ENST00000489442 MYOM2P54296 1465 aa19.45■□□□□ 0.7
CCL28-202ENST00000489442 ROBO1Q9Y6N7 1651 aa19.43■□□□□ 0.7
CCL28-202ENST00000489442 STAC3Q96MF2 364 aa19.43■□□□□ 0.7
CCL28-202ENST00000489442 C14orf93Q9H972 538 aaKnown RBP19.43■□□□□ 0.7
CCL28-202ENST00000489442 PTCH1Q13635 1447 aa19.42■□□□□ 0.7
CCL28-202ENST00000489442 CFAP70Q5T0N1 1121 aa19.42■□□□□ 0.7
CCL28-202ENST00000489442 ROBO2Q9HCK4 1378 aa19.42■□□□□ 0.7
CCL28-202ENST00000489442 LAMC1P11047 1609 aa19.41■□□□□ 0.7
CCL28-202ENST00000489442 NRXN1Q9ULB1 1477 aa19.41■□□□□ 0.7
CCL28-202ENST00000489442 LRPPRCP42704 1394 aaKnown RBP19.4■□□□□ 0.7
CCL28-202ENST00000489442 DHX57Q6P158 1386 aaKnown RBP19.4■□□□□ 0.7
CCL28-202ENST00000489442 DCCP43146 1447 aa19.4■□□□□ 0.7
CCL28-202ENST00000489442 ADGRL3Q9HAR2 1447 aa19.4■□□□□ 0.7
CCL28-202ENST00000489442 NALCNQ8IZF0 1738 aa19.39■□□□□ 0.69
CCL28-202ENST00000489442 PRAG1Q86YV5 1406 aa19.37■□□□□ 0.69
CCL28-202ENST00000489442 YTHDC2Q9H6S0 1430 aaKnown RBP19.37■□□□□ 0.69
CCL28-202ENST00000489442 ABCC11Q96J66 1382 aa19.37■□□□□ 0.69
CCL28-202ENST00000489442 NEUROD1Q13562 356 aa19.36■□□□□ 0.69
CCL28-202ENST00000489442 ASXL1Q8IXJ9 1541 aa19.36■□□□□ 0.69
CCL28-202ENST00000489442 KNDC1Q76NI1 1749 aa19.35■□□□□ 0.69
CCL28-202ENST00000489442 WAPLQ7Z5K2 1190 aa19.35■□□□□ 0.69
CCL28-202ENST00000489442 SIN3AQ96ST3 1273 aa19.34■□□□□ 0.69
CCL28-202ENST00000489442 PHLPP1O60346 1717 aa19.34■□□□□ 0.69
CCL28-202ENST00000489442 TECPR2O15040 1411 aa19.34■□□□□ 0.69
CCL28-202ENST00000489442 DISP3Q9P2K9 1392 aa19.34■□□□□ 0.69
CCL28-202ENST00000489442 MST1RQ04912 1400 aa19.32■□□□□ 0.68
CCL28-202ENST00000489442 BRINP3Q76B58 766 aa19.31■□□□□ 0.68
CCL28-202ENST00000489442 POGKQ9P215 609 aa19.31■□□□□ 0.68
CCL28-202ENST00000489442 SIRT1Q96EB6 747 aa19.3■□□□□ 0.68
CCL28-202ENST00000489442 TRAK1Q9UPV9 953 aa19.29■□□□□ 0.68
CCL28-202ENST00000489442 SAFB2Q14151 953 aaKnown RBP eCLIP19.28■□□□□ 0.68
CCL28-202ENST00000489442 L3MBTL2Q969R5 705 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms