RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 OSBPP22059 807 aa8.59□□□□□ -1.03
ATG4A-208ENST00000489247 HRCP23327 699 aa8.59□□□□□ -1.03
ATG4A-208ENST00000489247 LAPTM4AQ15012 233 aa8.59□□□□□ -1.03
ATG4A-208ENST00000489247 PPP4R3BQ5MIZ7 849 aa8.59□□□□□ -1.03
ATG4A-208ENST00000489247 THSD4Q6ZMP0 1018 aa8.58□□□□□ -1.04
ATG4A-208ENST00000489247 ZDHHC16Q969W1 377 aa8.58□□□□□ -1.04
ATG4A-208ENST00000489247 RBM33Q96EV2 1170 aaKnown RBP8.58□□□□□ -1.04
ATG4A-208ENST00000489247 TYW1BQ6NUM6 668 aa8.57□□□□□ -1.04
ATG4A-208ENST00000489247 EFCAB5A4FU69 1503 aa8.56□□□□□ -1.04
ATG4A-208ENST00000489247 MAP3K1Q13233 1512 aa8.56□□□□□ -1.04
ATG4A-208ENST00000489247 EPAS1Q99814 870 aa8.56□□□□□ -1.04
ATG4A-208ENST00000489247 TDRD9Q8NDG6 1382 aaKnown RBP8.56□□□□□ -1.04
ATG4A-208ENST00000489247 THOC2Q8NI27 1593 aaKnown RBP8.56□□□□□ -1.04
ATG4A-208ENST00000489247 FHAD1B1AJZ9 1412 aa8.55□□□□□ -1.04
ATG4A-208ENST00000489247 TSR1Q2NL82 804 aaKnown RBP8.55□□□□□ -1.04
ATG4A-208ENST00000489247 GRIN2BQ13224 1484 aa8.55□□□□□ -1.04
ATG4A-208ENST00000489247 EN1Q05925 392 aaPredicted RBP8.54□□□□□ -1.04
ATG4A-208ENST00000489247 BCL2L12Q9HB09 334 aa8.54□□□□□ -1.04
ATG4A-208ENST00000489247 AQRO60306 1485 aaKnown RBP eCLIP8.53□□□□□ -1.041e-6■■■■■ 33.8
ATG4A-208ENST00000489247 RBM26Q5T8P6 1007 aaKnown RBP8.53□□□□□ -1.04
ATG4A-208ENST00000489247 FBXW7Q969H0 707 aa8.53□□□□□ -1.04
ATG4A-208ENST00000489247 KCNK17Q96T54 332 aa8.53□□□□□ -1.04
ATG4A-208ENST00000489247 CDHR5Q9HBB8 845 aa8.53□□□□□ -1.04
ATG4A-208ENST00000489247 MAP3K7O43318 606 aa8.52□□□□□ -1.05
ATG4A-208ENST00000489247 COL9A1P20849 921 aa8.52□□□□□ -1.05
ATG4A-208ENST00000489247 C6orf132Q5T0Z8 1188 aa8.52□□□□□ -1.05
ATG4A-208ENST00000489247 ADAMTS12P58397 1594 aa8.52□□□□□ -1.05
ATG4A-208ENST00000489247 ERCC6Q03468 1493 aa8.51□□□□□ -1.05
ATG4A-208ENST00000489247 VPS9D1Q9Y2B5 631 aa8.51□□□□□ -1.05
ATG4A-208ENST00000489247 PTPREP23469 700 aa8.5□□□□□ -1.05
ATG4A-208ENST00000489247 SAMD9Q5K651 1589 aa8.49□□□□□ -1.05
ATG4A-208ENST00000489247 GFRA3O60609 400 aa8.49□□□□□ -1.05
ATG4A-208ENST00000489247 KCNH8Q96L42 1107 aa8.49□□□□□ -1.05
ATG4A-208ENST00000489247 ZNF608Q9ULD9 1512 aaPredicted RBP8.49□□□□□ -1.05
ATG4A-208ENST00000489247 CASKIN1Q8WXD9 1431 aa8.48□□□□□ -1.05
ATG4A-208ENST00000489247 ITGBL1O95965 494 aaPredicted RBP8.48□□□□□ -1.05
ATG4A-208ENST00000489247 ZNF787Q6DD87 383 aa8.48□□□□□ -1.05
ATG4A-208ENST00000489247 WNT2BQ93097 391 aa8.48□□□□□ -1.05
ATG4A-208ENST00000489247 ZNF775Q96BV0 537 aaPredicted RBP8.48□□□□□ -1.05
ATG4A-208ENST00000489247 MAGI1Q96QZ7 1491 aaPredicted RBP8.48□□□□□ -1.05
ATG4A-208ENST00000489247 PBRM1Q86U86 1689 aa8.48□□□□□ -1.05
ATG4A-208ENST00000489247 CTTNBP2Q8WZ74 1663 aa8.48□□□□□ -1.05
ATG4A-208ENST00000489247 FYCO1Q9BQS8 1478 aa8.47□□□□□ -1.05
ATG4A-208ENST00000489247 SMYD5Q6GMV2 418 aa8.47□□□□□ -1.05
ATG4A-208ENST00000489247 FMN1Q68DA7 1419 aa8.46□□□□□ -1.05
ATG4A-208ENST00000489247 NUTM2FA1L443 756 aa8.46□□□□□ -1.06
ATG4A-208ENST00000489247 GOLGA8CPA6NN73 597 aa8.46□□□□□ -1.06
ATG4A-208ENST00000489247 ZEB1P37275 1124 aaPredicted RBP8.46□□□□□ -1.06
ATG4A-208ENST00000489247 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.46□□□□□ -1.06
ATG4A-208ENST00000489247 NPDC1Q9NQX5 325 aaPredicted RBP8.46□□□□□ -1.06
ATG4A-208ENST00000489247 RRBP1Q9P2E9 1410 aaKnown RBP8.46□□□□□ -1.06
ATG4A-208ENST00000489247 UGGT2Q9NYU1 1516 aa8.45□□□□□ -1.06
ATG4A-208ENST00000489247 EIF4G3O43432 1585 aaKnown RBP8.45□□□□□ -1.06
ATG4A-208ENST00000489247 PPP1R3GB7ZBB8 358 aa8.45□□□□□ -1.06
ATG4A-208ENST00000489247 PROX2Q3B8N5 592 aa8.45□□□□□ -1.06
ATG4A-208ENST00000489247 LMOD2Q6P5Q4 547 aa8.45□□□□□ -1.06
ATG4A-208ENST00000489247 SNAPC4Q5SXM2 1469 aa8.45□□□□□ -1.06
ATG4A-208ENST00000489247 KIAA0586Q9BVV6 1533 aa8.44□□□□□ -1.06
ATG4A-208ENST00000489247 TIAM1Q13009 1591 aa8.44□□□□□ -1.06
ATG4A-208ENST00000489247 PPARGC1BQ86YN6 1023 aaKnown RBP8.44□□□□□ -1.06
ATG4A-208ENST00000489247 ZBED2Q9BTP6 218 aa8.44□□□□□ -1.06
ATG4A-208ENST00000489247 SYNJ2O15056 1496 aa8.44□□□□□ -1.06
ATG4A-208ENST00000489247 GRIN2AQ12879 1464 aa8.44□□□□□ -1.06
ATG4A-208ENST00000489247 FHOD3Q2V2M9 1422 aa8.43□□□□□ -1.06
ATG4A-208ENST00000489247 LRRC9Q6ZRR7 1453 aa8.43□□□□□ -1.06
ATG4A-208ENST00000489247 BHMG1C9JSJ3 638 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-208ENST00000489247 GPR37O15354 613 aa8.42□□□□□ -1.06
ATG4A-208ENST00000489247 PTGDRQ13258 359 aa8.42□□□□□ -1.06
ATG4A-208ENST00000489247 KANK4Q5T7N3 995 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-208ENST00000489247 FAM198AQ9UFP1 575 aa8.42□□□□□ -1.06
ATG4A-208ENST00000489247 NUP160Q12769 1436 aa8.42□□□□□ -1.06
ATG4A-208ENST00000489247 PCF11O94913 1555 aaKnown RBP8.42□□□□□ -1.06
ATG4A-208ENST00000489247 IQGAP2Q13576 1575 aa8.42□□□□□ -1.06
ATG4A-208ENST00000489247 CFAP43Q8NDM7 1665 aa8.41□□□□□ -1.06
ATG4A-208ENST00000489247 TULP1O00294 542 aaPredicted RBP8.4□□□□□ -1.06
ATG4A-208ENST00000489247 RANGAP1P46060 587 aaPredicted RBP8.4□□□□□ -1.06
ATG4A-208ENST00000489247 GPIHBP1Q8IV16 184 aa8.4□□□□□ -1.06
ATG4A-208ENST00000489247 SLC4A5Q9BY07 1137 aa8.4□□□□□ -1.06
ATG4A-208ENST00000489247 TSKSQ9UJT2 592 aa8.4□□□□□ -1.06
ATG4A-208ENST00000489247 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.39□□□□□ -1.07
ATG4A-208ENST00000489247 NRG2O14511 850 aaPredicted RBP8.39□□□□□ -1.07
ATG4A-208ENST00000489247 PRSS12P56730 875 aa8.39□□□□□ -1.07
ATG4A-208ENST00000489247 MRPL50Q8N5N7 158 aaKnown RBP8.39□□□□□ -1.07
ATG4A-208ENST00000489247 CDCA7LQ96GN5 454 aa8.39□□□□□ -1.07
ATG4A-208ENST00000489247 TRIM6-TRIM34B2RNG4 842 aa8.38□□□□□ -1.07
ATG4A-208ENST00000489247 C3orf80F5H4A9 247 aa8.38□□□□□ -1.07
ATG4A-208ENST00000489247 FCHSD2O94868 740 aa8.38□□□□□ -1.07
ATG4A-208ENST00000489247 FECHP22830 423 aa8.38□□□□□ -1.07
ATG4A-208ENST00000489247 PADI6Q6TGC4 694 aa8.38□□□□□ -1.07
ATG4A-208ENST00000489247 CCNB3Q8WWL7 1395 aa8.37□□□□□ -1.07
ATG4A-208ENST00000489247 CERKQ8TCT0 537 aa8.37□□□□□ -1.07
ATG4A-208ENST00000489247 KIAA1468Q9P260 1216 aa8.37□□□□□ -1.07
ATG4A-208ENST00000489247 DISP1Q96F81 1524 aa8.37□□□□□ -1.07
ATG4A-208ENST00000489247 CCDC18Q5T9S5 1454 aa8.37□□□□□ -1.07
ATG4A-208ENST00000489247 CEP170Q5SW79 1584 aa8.35□□□□□ -1.07
ATG4A-208ENST00000489247 FAM161AQ3B820 660 aa8.35□□□□□ -1.07
ATG4A-208ENST00000489247 TTC13Q8NBP0 860 aa8.35□□□□□ -1.07
ATG4A-208ENST00000489247 KIAA0556O60303 1618 aa8.35□□□□□ -1.07
ATG4A-208ENST00000489247 ARHGEF11O15085 1522 aa8.34□□□□□ -1.07
ATG4A-208ENST00000489247 SMAPO00193 183 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms