RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.98	■■□□□ 1.11
ATG4A-208	ENST00000489247	CHIC1	Q5VXU3	224 aa		20.53	■□□□□ 0.88
ATG4A-208	ENST00000489247	SENP3	Q9H4L4	574 aa	Predicted RBP	18.9	■□□□□ 0.62
ATG4A-208	ENST00000489247	PHF23	Q9BUL5	403 aa	Predicted RBP	18.51	■□□□□ 0.55
ATG4A-208	ENST00000489247	POTED	Q86YR6	584 aa		18.09	■□□□□ 0.49
ATG4A-208	ENST00000489247	FOXD1	Q16676	465 aa		17.72	■□□□□ 0.43
ATG4A-208	ENST00000489247	MSH5	O43196	834 aa		16.94	■□□□□ 0.3
ATG4A-208	ENST00000489247	PIAS4	Q8N2W9	510 aa	Predicted RBP	16.35	■□□□□ 0.21
ATG4A-208	ENST00000489247	PPP6R1	Q9UPN7	881 aa		15.85	■□□□□ 0.13
ATG4A-208	ENST00000489247	ADRA2B	P18089	450 aa		15.76	■□□□□ 0.11
ATG4A-208	ENST00000489247	PLPPR3	Q6T4P5	718 aa		15.56	■□□□□ 0.08
ATG4A-208	ENST00000489247	CACNB1	Q02641	598 aa	Predicted RBP	15.11	■□□□□ 0.01
ATG4A-208	ENST00000489247	DMRT2	Q9Y5R5	561 aa		14.84	□□□□□ -0.03
ATG4A-208	ENST00000489247	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.75	□□□□□ -0.05
ATG4A-208	ENST00000489247	SCAF1	Q9H7N4	1312 aa	Known RBP	14.42	□□□□□ -0.1
ATG4A-208	ENST00000489247	RNF39	Q9H2S5	420 aa		14.37	□□□□□ -0.11
ATG4A-208	ENST00000489247	DCAF8L1	A6NGE4	600 aa		14.3	□□□□□ -0.12
ATG4A-208	ENST00000489247	C1QBP	Q07021	282 aa	Known RBP	14.1	□□□□□ -0.15
ATG4A-208	ENST00000489247	POTEH	Q6S545	545 aa		14	□□□□□ -0.17
ATG4A-208	ENST00000489247	HOXD11	P31277	338 aa	Predicted RBP	13.93	□□□□□ -0.18
ATG4A-208	ENST00000489247	DNAJC5B	Q9UF47	199 aa		13.62	□□□□□ -0.23
ATG4A-208	ENST00000489247	PPP4R3CP	Q6ZMV5	832 aa		13.61	□□□□□ -0.23
ATG4A-208	ENST00000489247	RNF216	Q9NWF9	866 aa	Predicted RBP	13.58	□□□□□ -0.24
ATG4A-208	ENST00000489247	CNKSR2	Q8WXI2	1034 aa		13.47	□□□□□ -0.25
ATG4A-208	ENST00000489247	KCNA4	P22459	653 aa		13.31	□□□□□ -0.28
ATG4A-208	ENST00000489247	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.29	□□□□□ -0.28
ATG4A-208	ENST00000489247	NCBP3	Q53F19	620 aa	Known RBP	13.16	□□□□□ -0.3
ATG4A-208	ENST00000489247	DSG3	P32926	999 aa		13.15	□□□□□ -0.3
ATG4A-208	ENST00000489247	NPM3	O75607	178 aa	Known RBP	13.07	□□□□□ -0.32
ATG4A-208	ENST00000489247	CAPN15	O75808	1086 aa		13.02	□□□□□ -0.33
ATG4A-208	ENST00000489247	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.99	□□□□□ -0.33
ATG4A-208	ENST00000489247		U3KPZ7	1027 aa	Predicted RBP	12.91	□□□□□ -0.34
ATG4A-208	ENST00000489247	SP7	Q8TDD2	431 aa	Predicted RBP	12.7	□□□□□ -0.38
ATG4A-208	ENST00000489247	CHRDL2	Q6WN34	429 aa		12.67	□□□□□ -0.38
ATG4A-208	ENST00000489247	ABCB7	O75027	752 aa		12.64	□□□□□ -0.39
ATG4A-208	ENST00000489247	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.61	□□□□□ -0.39
ATG4A-208	ENST00000489247	TRH	P20396	242 aa	Predicted RBP	12.59	□□□□□ -0.39
ATG4A-208	ENST00000489247	RBM42	Q9BTD8	480 aa	Known RBP	12.58	□□□□□ -0.4
ATG4A-208	ENST00000489247	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.53	□□□□□ -0.4
ATG4A-208	ENST00000489247	APLP2	Q06481	763 aa		12.45	□□□□□ -0.42
ATG4A-208	ENST00000489247	NISCH	Q9Y2I1	1504 aa		12.37	□□□□□ -0.43
ATG4A-208	ENST00000489247	SLC4A2	P04920	1241 aa		12.37	□□□□□ -0.43
ATG4A-208	ENST00000489247	ZBTB22	O15209	634 aa		12.27	□□□□□ -0.45
ATG4A-208	ENST00000489247	EHMT2	Q96KQ7	1210 aa		12.27	□□□□□ -0.45
ATG4A-208	ENST00000489247	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.21	□□□□□ -0.45
ATG4A-208	ENST00000489247	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.21	□□□□□ -0.45
ATG4A-208	ENST00000489247	HAX1	O00165	279 aa		12.2	□□□□□ -0.46
ATG4A-208	ENST00000489247	FOXD4L1	Q9NU39	408 aa		12.19	□□□□□ -0.46
ATG4A-208	ENST00000489247	PIP4P2	Q8N4L2	257 aa		12.17	□□□□□ -0.46
ATG4A-208	ENST00000489247	CSRNP3	Q8WYN3	585 aa		12.15	□□□□□ -0.46
ATG4A-208	ENST00000489247	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.1	□□□□□ -0.47
ATG4A-208	ENST00000489247	AKT1S1	Q96B36	256 aa		12.09	□□□□□ -0.47
ATG4A-208	ENST00000489247	POLA2	Q14181	598 aa		12.03	□□□□□ -0.48
ATG4A-208	ENST00000489247	MYCN	P04198	464 aa	Predicted RBP	12.02	□□□□□ -0.49
ATG4A-208	ENST00000489247	REM2	Q8IYK8	340 aa	Predicted RBP	11.98	□□□□□ -0.49
ATG4A-208	ENST00000489247	EVX2	Q03828	476 aa		11.97	□□□□□ -0.49
ATG4A-208	ENST00000489247	FXR2	P51116	673 aa	Known RBP eCLIP	11.94	□□□□□ -0.5
ATG4A-208	ENST00000489247	PLSCR2	Q9NRY7	297 aa		11.93	□□□□□ -0.5
ATG4A-208	ENST00000489247	LHX8	Q68G74	356 aa		11.89	□□□□□ -0.51
ATG4A-208	ENST00000489247	PITPNM1	O00562	1244 aa		11.87	□□□□□ -0.51
ATG4A-208	ENST00000489247	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.81	□□□□□ -0.52
ATG4A-208	ENST00000489247	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.72	□□□□□ -0.53
ATG4A-208	ENST00000489247	ATXN8OS	P0DMR3	200 aa		11.71	□□□□□ -0.53
ATG4A-208	ENST00000489247	OSCAR	Q8IYS5	282 aa		11.71	□□□□□ -0.53
ATG4A-208	ENST00000489247	GABBR2	O75899	941 aa		11.65	□□□□□ -0.54
ATG4A-208	ENST00000489247	C19orf67	A6NJJ6	358 aa		11.59	□□□□□ -0.55
ATG4A-208	ENST00000489247	PRKAR2A	P13861	404 aa	Known RBP	11.55	□□□□□ -0.56
ATG4A-208	ENST00000489247	POTEI	P0CG38	1075 aa		11.39	□□□□□ -0.59
ATG4A-208	ENST00000489247	CLEC11A	Q9Y240	323 aa		11.36	□□□□□ -0.59
ATG4A-208	ENST00000489247	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.31	□□□□□ -0.6
ATG4A-208	ENST00000489247	SPDYE2B	A6NHP3	402 aa		11.28	□□□□□ -0.6
ATG4A-208	ENST00000489247	SPDYE6	P0CI01	402 aa		11.28	□□□□□ -0.6
ATG4A-208	ENST00000489247	SPDYE2	Q495Y8	402 aa		11.28	□□□□□ -0.6
ATG4A-208	ENST00000489247	MKRN4P	Q13434	485 aa	Predicted RBP	11.27	□□□□□ -0.61
ATG4A-208	ENST00000489247	POTEM	A6NI47	508 aa		11.26	□□□□□ -0.61
ATG4A-208	ENST00000489247	CHADL	Q6NUI6	762 aa		11.23	□□□□□ -0.61
ATG4A-208	ENST00000489247	FBLN2	P98095	1184 aa		11.19	□□□□□ -0.62
ATG4A-208	ENST00000489247	POTEG	Q6S5H5	508 aa		11.19	□□□□□ -0.62
ATG4A-208	ENST00000489247	DCBLD2	Q96PD2	775 aa		11.16	□□□□□ -0.62
ATG4A-208	ENST00000489247	CD44	P16070	742 aa	Known RBP	11.14	□□□□□ -0.63
ATG4A-208	ENST00000489247	CLCN6	P51797	869 aa		11.14	□□□□□ -0.63
ATG4A-208	ENST00000489247	OTUD5	Q96G74	571 aa		11.14	□□□□□ -0.63
ATG4A-208	ENST00000489247	PCDH10	Q9P2E7	1040 aa		11.1	□□□□□ -0.63
ATG4A-208	ENST00000489247	SSUH2	Q9Y2M2	353 aa		11.03	□□□□□ -0.64
ATG4A-208	ENST00000489247	PRR29	P0C7W0	189 aa		11.02	□□□□□ -0.65
ATG4A-208	ENST00000489247	POTEB2	H3BUK9	544 aa		11	□□□□□ -0.65
ATG4A-208	ENST00000489247	ZNF692	Q9BU19	519 aa	Predicted RBP	11	□□□□□ -0.65
ATG4A-208	ENST00000489247	FKBP8	Q14318	412 aa		10.96	□□□□□ -0.65
ATG4A-208	ENST00000489247	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.96	□□□□□ -0.65
ATG4A-208	ENST00000489247	SPDYE4	A6NLX3	237 aa		10.95	□□□□□ -0.66
ATG4A-208	ENST00000489247	ZNF579	Q8NAF0	562 aa	Known RBP	10.92	□□□□□ -0.66
ATG4A-208	ENST00000489247	GALR2	O43603	387 aa	Predicted RBP	10.85	□□□□□ -0.67
ATG4A-208	ENST00000489247	ZRANB1	Q9UGI0	708 aa		10.84	□□□□□ -0.67
ATG4A-208	ENST00000489247	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
ATG4A-208	ENST00000489247	LCE2D	Q5TA82	110 aa	Predicted RBP	10.8	□□□□□ -0.68
ATG4A-208	ENST00000489247	PROM2	Q8N271	834 aa		10.76	□□□□□ -0.69
ATG4A-208	ENST00000489247	CCDC180	Q9P1Z9	1646 aa		10.73	□□□□□ -0.69
ATG4A-208	ENST00000489247	FAM163A	Q96GL9	167 aa	Predicted RBP	10.72	□□□□□ -0.69
ATG4A-208	ENST00000489247	PELP1	Q8IZL8	1130 aa	Known RBP	10.71	□□□□□ -0.69
ATG4A-208	ENST00000489247	POTEJ	P0CG39	1038 aa		10.68	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms