RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 RIMS2Q9UQ26 1411 aa34.9■■■■□ 3.18
COL9A3-213ENST00000489045 SLC26A8Q96RN1 970 aa34.88■■■■□ 3.17
COL9A3-213ENST00000489045 CHGAP10645 457 aaKnown RBP34.87■■■■□ 3.17
COL9A3-213ENST00000489045 PLEKHG1Q9ULL1 1385 aa34.84■■■■□ 3.17
COL9A3-213ENST00000489045 BCANQ96GW7 911 aa34.83■■■■□ 3.17
COL9A3-213ENST00000489045 NWD1Q149M9 1564 aa34.83■■■■□ 3.17
COL9A3-213ENST00000489045 PPP1R15AO75807 674 aaPredicted RBP34.82■■■■□ 3.16
COL9A3-213ENST00000489045 HFM1A2PYH4 1435 aa34.81■■■■□ 3.16
COL9A3-213ENST00000489045 SENP3Q9H4L4 574 aaPredicted RBP34.81■■■■□ 3.16
COL9A3-213ENST00000489045 DISP3Q9P2K9 1392 aa34.81■■■■□ 3.16
COL9A3-213ENST00000489045 HDGFP51858 240 aaKnown RBP34.8■■■■□ 3.16
COL9A3-213ENST00000489045 KCNA6P17658 529 aa34.79■■■■□ 3.16
COL9A3-213ENST00000489045 CHD2O14647 1828 aaKnown RBP34.77■■■■□ 3.16
COL9A3-213ENST00000489045 HSPA1LP34931 641 aa34.77■■■■□ 3.16
COL9A3-213ENST00000489045 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.76■■■■□ 3.16
COL9A3-213ENST00000489045 NKTRP30414 1462 aaKnown RBP34.75■■■■□ 3.15
COL9A3-213ENST00000489045 TMEM94Q12767 1356 aa34.73■■■■□ 3.15
COL9A3-213ENST00000489045 NUTM2DQ5VT03 806 aaPredicted RBP34.72■■■■□ 3.15
COL9A3-213ENST00000489045 CLTCL1P53675 1640 aa34.72■■■■□ 3.15
COL9A3-213ENST00000489045 TRPM2O94759 1503 aa34.71■■■■□ 3.15
COL9A3-213ENST00000489045 DIP2AQ14689 1571 aa34.7■■■■□ 3.14
COL9A3-213ENST00000489045 PROSER2Q86WR7 435 aaPredicted RBP34.68■■■■□ 3.14
COL9A3-213ENST00000489045 ADAMTS13Q76LX8 1427 aa34.67■■■■□ 3.14
COL9A3-213ENST00000489045 TRIM52Q96A61 297 aa34.66■■■■□ 3.14
COL9A3-213ENST00000489045 KIF1BO60333 1816 aa34.66■■■■□ 3.14
COL9A3-213ENST00000489045 TBX22Q9Y458 520 aa34.65■■■■□ 3.14
COL9A3-213ENST00000489045 RBM33Q96EV2 1170 aaKnown RBP34.64■■■■□ 3.14
COL9A3-213ENST00000489045 NRXN3Q9Y4C0 1643 aa34.6■■■■□ 3.13
COL9A3-213ENST00000489045 ZNF326Q5BKZ1 582 aaKnown RBP34.58■■■■□ 3.13
COL9A3-213ENST00000489045 MED1Q15648 1581 aaPredicted RBP34.57■■■■□ 3.12
COL9A3-213ENST00000489045 SETBP1Q9Y6X0 1596 aa34.57■■■■□ 3.12
COL9A3-213ENST00000489045 NEXMIFQ5QGS0 1516 aa34.56■■■■□ 3.12
COL9A3-213ENST00000489045 SLC4A1APQ9BWU0 796 aaKnown RBP34.56■■■■□ 3.12
COL9A3-213ENST00000489045 PIK3R4Q99570 1358 aa34.55■■■■□ 3.12
COL9A3-213ENST00000489045 ILDR2Q71H61 639 aa34.54■■■■□ 3.12
COL9A3-213ENST00000489045 MSH6P52701 1360 aa34.53■■■■□ 3.12
COL9A3-213ENST00000489045 ROBO1Q9Y6N7 1651 aa34.53■■■■□ 3.12
COL9A3-213ENST00000489045 FAM135BQ49AJ0 1406 aa34.51■■■■□ 3.12
COL9A3-213ENST00000489045 PTPRUQ92729 1446 aa34.47■■■■□ 3.11
COL9A3-213ENST00000489045 XRN1Q8IZH2 1706 aaKnown RBP34.47■■■■□ 3.11
COL9A3-213ENST00000489045 NCOA3Q9Y6Q9 1424 aa34.46■■■■□ 3.11
COL9A3-213ENST00000489045 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.42■■■■□ 3.1
COL9A3-213ENST00000489045 AMOTL2Q9Y2J4 779 aa34.42■■■■□ 3.1
COL9A3-213ENST00000489045 FOXD1Q16676 465 aa34.4■■■■□ 3.1
COL9A3-213ENST00000489045 PPLO60437 1756 aa34.4■■■■□ 3.1
COL9A3-213ENST00000489045 C14orf37Q86TY3 774 aa34.39■■■■□ 3.1
COL9A3-213ENST00000489045 METP08581 1390 aa34.37■■■■□ 3.09
COL9A3-213ENST00000489045 SLAIN2Q9P270 581 aa34.36■■■■□ 3.09
COL9A3-213ENST00000489045 SETD1AO15047 1707 aaKnown RBP34.35■■■■□ 3.09
COL9A3-213ENST00000489045 MPHOSPH9Q99550 1183 aa34.33■■■■□ 3.09
COL9A3-213ENST00000489045 PHLPP1O60346 1717 aa34.33■■■■□ 3.09
COL9A3-213ENST00000489045 SETD5Q9C0A6 1442 aa34.32■■■■□ 3.08
COL9A3-213ENST00000489045 CCDC144AA2RUR9 1427 aa34.31■■■■□ 3.08
COL9A3-213ENST00000489045 RPGRIP1LQ68CZ1 1315 aa34.3■■■■□ 3.08
COL9A3-213ENST00000489045 VGFO15240 615 aaPredicted RBP34.3■■■■□ 3.08
COL9A3-213ENST00000489045 C19orf44Q9H6X5 657 aa34.3■■■■□ 3.08
COL9A3-213ENST00000489045 CADPS2Q86UW7 1296 aa34.27■■■■□ 3.08
COL9A3-213ENST00000489045 ATF3P18847 181 aa34.26■■■■□ 3.08
COL9A3-213ENST00000489045 IFT172Q9UG01 1749 aa34.25■■■■□ 3.07
COL9A3-213ENST00000489045 SOCS7O14512 581 aa34.24■■■■□ 3.07
COL9A3-213ENST00000489045 PHF23Q9BUL5 403 aaPredicted RBP34.24■■■■□ 3.07
COL9A3-213ENST00000489045 ACIN1Q9UKV3 1341 aaKnown RBP34.24■■■■□ 3.07
COL9A3-213ENST00000489045 DCCP43146 1447 aa34.23■■■■□ 3.07
COL9A3-213ENST00000489045 NALCNQ8IZF0 1738 aa34.23■■■■□ 3.07
COL9A3-213ENST00000489045 SPATA31E1Q6ZUB1 1445 aa34.21■■■■□ 3.07
COL9A3-213ENST00000489045 COL16A1Q07092 1604 aaPredicted RBP34.21■■■■□ 3.07
COL9A3-213ENST00000489045 RAB3GAP2Q9H2M9 1393 aa34.21■■■■□ 3.07
COL9A3-213ENST00000489045 AHDC1Q5TGY3 1603 aaPredicted RBP34.17■■■■□ 3.06
COL9A3-213ENST00000489045 ADGRL3Q9HAR2 1447 aa34.17■■■■□ 3.06
COL9A3-213ENST00000489045 PTCH1Q13635 1447 aa34.16■■■■□ 3.06
COL9A3-213ENST00000489045 RGL3Q3MIN7 710 aa34.15■■■■□ 3.06
COL9A3-213ENST00000489045 MST1RQ04912 1400 aa34.13■■■■□ 3.05
COL9A3-213ENST00000489045 PRAG1Q86YV5 1406 aa34.12■■■■□ 3.05
COL9A3-213ENST00000489045 ADGRF5Q8IZF2 1346 aa34.11■■■■□ 3.05
COL9A3-213ENST00000489045 ANKRD30BQ9BXX2 1392 aa34.1■■■■□ 3.05
COL9A3-213ENST00000489045 ROBO2Q9HCK4 1378 aa34.1■■■■□ 3.05
COL9A3-213ENST00000489045 JCADQ9P266 1359 aa34.1■■■■□ 3.05
COL9A3-213ENST00000489045 BRINP3Q76B58 766 aa34.09■■■■□ 3.05
COL9A3-213ENST00000489045 ASXL1Q8IXJ9 1541 aa34.09■■■■□ 3.05
COL9A3-213ENST00000489045 NHSL1Q5SYE7 1610 aa34.05■■■■□ 3.04
COL9A3-213ENST00000489045 SHPRHQ149N8 1683 aa34.04■■■■□ 3.04
COL9A3-213ENST00000489045 RGS17Q9UGC6 210 aaPredicted RBP34.02■■■■□ 3.04
COL9A3-213ENST00000489045 PIK3C2GO75747 1445 aa34.02■■■■□ 3.04
COL9A3-213ENST00000489045 KNDC1Q76NI1 1749 aa33.99■■■■□ 3.03
COL9A3-213ENST00000489045 C1orf167Q5SNV9 1468 aa33.95■■■■□ 3.03
COL9A3-213ENST00000489045 MYOM2P54296 1465 aa33.95■■■■□ 3.02
COL9A3-213ENST00000489045 LRP6O75581 1613 aa33.93■■■■□ 3.02
COL9A3-213ENST00000489045 TECPR2O15040 1411 aa33.93■■■■□ 3.02
COL9A3-213ENST00000489045 NRXN1Q9ULB1 1477 aa33.93■■■■□ 3.02
COL9A3-213ENST00000489045 SPATA31A6Q5VVP1 1343 aa33.92■■■■□ 3.02
COL9A3-213ENST00000489045 LRPPRCP42704 1394 aaKnown RBP33.92■■■■□ 3.02
COL9A3-213ENST00000489045 LAMC1P11047 1609 aa33.92■■■■□ 3.02
COL9A3-213ENST00000489045 CDC42BPGQ6DT37 1551 aa33.91■■■■□ 3.02
COL9A3-213ENST00000489045 STK26Q9P289 416 aa33.91■■■■□ 3.02
COL9A3-213ENST00000489045 HRCP23327 699 aa33.9■■■■□ 3.02
COL9A3-213ENST00000489045 TMEM132EQ6IEE7 984 aa33.9■■■■□ 3.02
COL9A3-213ENST00000489045 DDX17Q92841 729 aaKnown RBP33.87■■■■□ 3.01
COL9A3-213ENST00000489045 ABCC11Q96J66 1382 aa33.86■■■■□ 3.01
COL9A3-213ENST00000489045 YTHDC2Q9H6S0 1430 aaKnown RBP33.86■■■■□ 3.01
COL9A3-213ENST00000489045 POTEAQ6S8J7 498 aa33.84■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms