RNA–Protein interactions for RNA: ENST00000486572.1

COL1A1-207, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 836 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-207ENST00000486572 FOXD1Q16676 465 aa27.02■■□□□ 1.92
COL1A1-207ENST00000486572 PPP1R15AO75807 674 aaPredicted RBP27■■□□□ 1.91
COL1A1-207ENST00000486572 ABCF1Q8NE71 845 aaKnown RBP eCLIP27■■□□□ 1.91
COL1A1-207ENST00000486572 CPS1P31327 1500 aa27■■□□□ 1.91
COL1A1-207ENST00000486572 KIF1BO60333 1816 aa27■■□□□ 1.91
COL1A1-207ENST00000486572 IQSEC2Q5JU85 1478 aa26.99■■□□□ 1.91
COL1A1-207ENST00000486572 PLEKHG1Q9ULL1 1385 aa26.98■■□□□ 1.91
COL1A1-207ENST00000486572 HRCP23327 699 aa26.98■■□□□ 1.91
COL1A1-207ENST00000486572 FBXO41Q8TF61 875 aa26.96■■□□□ 1.91
COL1A1-207ENST00000486572 ZNF326Q5BKZ1 582 aaKnown RBP26.95■■□□□ 1.9
COL1A1-207ENST00000486572 CCDC144AA2RUR9 1427 aa26.95■■□□□ 1.9
COL1A1-207ENST00000486572 ILDR1Q86SU0 546 aaPredicted RBP26.94■■□□□ 1.9
COL1A1-207ENST00000486572 BCANQ96GW7 911 aa26.93■■□□□ 1.9
COL1A1-207ENST00000486572 NUTM2DQ5VT03 806 aaPredicted RBP26.92■■□□□ 1.9
COL1A1-207ENST00000486572 SLC26A8Q96RN1 970 aa26.92■■□□□ 1.9
COL1A1-207ENST00000486572 STRCP1A6NGW2 1772 aa26.92■■□□□ 1.9
COL1A1-207ENST00000486572 NEXMIFQ5QGS0 1516 aa26.91■■□□□ 1.9
COL1A1-207ENST00000486572 SENP3Q9H4L4 574 aaPredicted RBP26.88■■□□□ 1.89
COL1A1-207ENST00000486572 DIP2AQ14689 1571 aa26.88■■□□□ 1.89
COL1A1-207ENST00000486572 ADAMTS13Q76LX8 1427 aa26.85■■□□□ 1.89
COL1A1-207ENST00000486572 NWD1Q149M9 1564 aa26.84■■□□□ 1.89
COL1A1-207ENST00000486572 SETBP1Q9Y6X0 1596 aa26.84■■□□□ 1.89
COL1A1-207ENST00000486572 LRRC7Q96NW7 1537 aa26.83■■□□□ 1.89
COL1A1-207ENST00000486572 RPGRIP1LQ68CZ1 1315 aa26.83■■□□□ 1.89
COL1A1-207ENST00000486572 SPATA31E1Q6ZUB1 1445 aa26.82■■□□□ 1.88
COL1A1-207ENST00000486572 TBX22Q9Y458 520 aa26.82■■□□□ 1.88
COL1A1-207ENST00000486572 NRXN3Q9Y4C0 1643 aa26.82■■□□□ 1.88
COL1A1-207ENST00000486572 KCNA6P17658 529 aa26.81■■□□□ 1.88
COL1A1-207ENST00000486572 PPLO60437 1756 aa26.8■■□□□ 1.88
COL1A1-207ENST00000486572 NKTRP30414 1462 aaKnown RBP26.79■■□□□ 1.88
COL1A1-207ENST00000486572 ANKRD30BQ9BXX2 1392 aa26.78■■□□□ 1.88
COL1A1-207ENST00000486572 CHD2O14647 1828 aaKnown RBP26.77■■□□□ 1.88
COL1A1-207ENST00000486572 PIK3R4Q99570 1358 aa26.77■■□□□ 1.88
COL1A1-207ENST00000486572 VGFO15240 615 aaPredicted RBP26.77■■□□□ 1.88
COL1A1-207ENST00000486572 TRIM26Q12899 539 aaPredicted RBP26.77■■□□□ 1.88
COL1A1-207ENST00000486572 IFT172Q9UG01 1749 aa26.74■■□□□ 1.87
COL1A1-207ENST00000486572 RGL3Q3MIN7 710 aa26.74■■□□□ 1.87
COL1A1-207ENST00000486572 UBAP1LF5GYI3 381 aa26.72■■□□□ 1.87
COL1A1-207ENST00000486572 XIRP1Q702N8 1843 aaKnown RBP26.72■■□□□ 1.87
COL1A1-207ENST00000486572 TMEM94Q12767 1356 aa26.7■■□□□ 1.86
COL1A1-207ENST00000486572 PROSER2Q86WR7 435 aaPredicted RBP26.68■■□□□ 1.86
COL1A1-207ENST00000486572 PTPRUQ92729 1446 aa26.67■■□□□ 1.86
COL1A1-207ENST00000486572 METP08581 1390 aa26.67■■□□□ 1.86
COL1A1-207ENST00000486572 SETD1AO15047 1707 aaKnown RBP26.66■■□□□ 1.86
COL1A1-207ENST00000486572 XRN1Q8IZH2 1706 aaKnown RBP26.66■■□□□ 1.86
COL1A1-207ENST00000486572 TOM1O60784 492 aa26.66■■□□□ 1.86
COL1A1-207ENST00000486572 ALKQ9UM73 1620 aa26.65■■□□□ 1.86
COL1A1-207ENST00000486572 ADGRF5Q8IZF2 1346 aa26.64■■□□□ 1.85
COL1A1-207ENST00000486572 AMOTL2Q9Y2J4 779 aa26.63■■□□□ 1.85
COL1A1-207ENST00000486572 MYOM2P54296 1465 aa26.62■■□□□ 1.85
COL1A1-207ENST00000486572 RBM33Q96EV2 1170 aaKnown RBP26.61■■□□□ 1.85
COL1A1-207ENST00000486572 PIK3C2GO75747 1445 aa26.61■■□□□ 1.85
COL1A1-207ENST00000486572 NCOA3Q9Y6Q9 1424 aa26.59■■□□□ 1.85
COL1A1-207ENST00000486572 NRXN1Q9ULB1 1477 aa26.58■■□□□ 1.85
COL1A1-207ENST00000486572 MSH6P52701 1360 aa26.57■■□□□ 1.84
COL1A1-207ENST00000486572 PIP4K2BP78356 416 aa26.56■■□□□ 1.84
COL1A1-207ENST00000486572 SCAF1Q9H7N4 1312 aaKnown RBP26.56■■□□□ 1.84
COL1A1-207ENST00000486572 PRAG1Q86YV5 1406 aa26.53■■□□□ 1.84
COL1A1-207ENST00000486572 LAMC1P11047 1609 aa26.52■■□□□ 1.84
COL1A1-207ENST00000486572 PTCH1Q13635 1447 aa26.52■■□□□ 1.84
COL1A1-207ENST00000486572 DHX57Q6P158 1386 aaKnown RBP26.52■■□□□ 1.84
COL1A1-207ENST00000486572 C14orf37Q86TY3 774 aa26.52■■□□□ 1.84
COL1A1-207ENST00000486572 ASXL1Q8IXJ9 1541 aa26.5■■□□□ 1.83
COL1A1-207ENST00000486572 DCAF11Q8TEB1 546 aa26.49■■□□□ 1.83
COL1A1-207ENST00000486572 STAC3Q96MF2 364 aa26.48■■□□□ 1.83
COL1A1-207ENST00000486572 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.47■■□□□ 1.83
COL1A1-207ENST00000486572 C19orf44Q9H6X5 657 aa26.46■■□□□ 1.83
COL1A1-207ENST00000486572 C14orf93Q9H972 538 aaKnown RBP26.46■■□□□ 1.83
COL1A1-207ENST00000486572 ROBO2Q9HCK4 1378 aa26.46■■□□□ 1.83
COL1A1-207ENST00000486572 KDM2AQ9Y2K7 1162 aa26.45■■□□□ 1.82
COL1A1-207ENST00000486572 TECPR2O15040 1411 aa26.44■■□□□ 1.82
COL1A1-207ENST00000486572 DCCP43146 1447 aa26.44■■□□□ 1.82
COL1A1-207ENST00000486572 ADGRL3Q9HAR2 1447 aa26.44■■□□□ 1.82
COL1A1-207ENST00000486572 LRPPRCP42704 1394 aaKnown RBP26.44■■□□□ 1.82
COL1A1-207ENST00000486572 KNDC1Q76NI1 1749 aa26.43■■□□□ 1.82
COL1A1-207ENST00000486572 CFAP70Q5T0N1 1121 aa26.43■■□□□ 1.82
COL1A1-207ENST00000486572 NALCNQ8IZF0 1738 aa26.42■■□□□ 1.82
COL1A1-207ENST00000486572 TMEM132EQ6IEE7 984 aa26.42■■□□□ 1.82
COL1A1-207ENST00000486572 CADPS2Q86UW7 1296 aa26.42■■□□□ 1.82
COL1A1-207ENST00000486572 FAM135BQ49AJ0 1406 aa26.41■■□□□ 1.82
COL1A1-207ENST00000486572 YTHDC2Q9H6S0 1430 aaKnown RBP26.41■■□□□ 1.82
COL1A1-207ENST00000486572 ATF3P18847 181 aa26.41■■□□□ 1.82
COL1A1-207ENST00000486572 ABCC11Q96J66 1382 aa26.4■■□□□ 1.82
COL1A1-207ENST00000486572 ROBO1Q9Y6N7 1651 aa26.4■■□□□ 1.82
COL1A1-207ENST00000486572 HSPA1LP34931 641 aa26.39■■□□□ 1.82
COL1A1-207ENST00000486572 SLAIN2Q9P270 581 aa26.39■■□□□ 1.82
COL1A1-207ENST00000486572 STK26Q9P289 416 aa26.39■■□□□ 1.82
COL1A1-207ENST00000486572 SIN3AQ96ST3 1273 aa26.38■■□□□ 1.81
COL1A1-207ENST00000486572 ADGRB1O14514 1584 aa26.37■■□□□ 1.81
COL1A1-207ENST00000486572 NEUROD1Q13562 356 aa26.33■■□□□ 1.81
COL1A1-207ENST00000486572 PCGF6Q9BYE7 350 aa26.33■■□□□ 1.81
COL1A1-207ENST00000486572 MST1RQ04912 1400 aa26.31■■□□□ 1.8
COL1A1-207ENST00000486572 DLC1Q96QB1 1528 aa26.3■■□□□ 1.8
COL1A1-207ENST00000486572 L3MBTL2Q969R5 705 aa26.3■■□□□ 1.8
COL1A1-207ENST00000486572 CDC42BPGQ6DT37 1551 aa26.29■■□□□ 1.8
COL1A1-207ENST00000486572 KIAA1210Q9ULL0 1709 aa26.29■■□□□ 1.8
COL1A1-207ENST00000486572 WAPLQ7Z5K2 1190 aa26.29■■□□□ 1.8
COL1A1-207ENST00000486572 SIRT1Q96EB6 747 aa26.29■■□□□ 1.8
COL1A1-207ENST00000486572 PLEKHH1Q9ULM0 1364 aa26.29■■□□□ 1.8
COL1A1-207ENST00000486572 BRINP3Q76B58 766 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms