RNA–Protein interactions for RNA: ENST00000484254.1

CNTNAP3B-208, Transcript of contactin associated protein like 3B, human

TSL 3

Gene CNTNAP3B, Length 742 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNTNAP3B-208	ENST00000484254	CLTCL1	P53675	1640 aa		32.99	■■■□□ 2.87
CNTNAP3B-208	ENST00000484254	RAB3GAP2	Q9H2M9	1393 aa		32.99	■■■□□ 2.87
CNTNAP3B-208	ENST00000484254	MPHOSPH9	Q99550	1183 aa		32.99	■■■□□ 2.87
CNTNAP3B-208	ENST00000484254	CPS1	P31327	1500 aa		32.98	■■■□□ 2.87
CNTNAP3B-208	ENST00000484254	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.97	■■■□□ 2.87
CNTNAP3B-208	ENST00000484254	PPP1R15A	O75807	674 aa	Predicted RBP	32.94	■■■□□ 2.86
CNTNAP3B-208	ENST00000484254	PLEKHG1	Q9ULL1	1385 aa		32.94	■■■□□ 2.86
CNTNAP3B-208	ENST00000484254	FOXD1	Q16676	465 aa		32.93	■■■□□ 2.86
CNTNAP3B-208	ENST00000484254	STRCP1	A6NGW2	1772 aa		32.9	■■■□□ 2.86
CNTNAP3B-208	ENST00000484254	KIF1B	O60333	1816 aa		32.89	■■■□□ 2.86
CNTNAP3B-208	ENST00000484254	BCAN	Q96GW7	911 aa		32.89	■■■□□ 2.86
CNTNAP3B-208	ENST00000484254	SLC26A8	Q96RN1	970 aa		32.89	■■■□□ 2.86
CNTNAP3B-208	ENST00000484254	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.88	■■■□□ 2.85
CNTNAP3B-208	ENST00000484254	ZNF326	Q5BKZ1	582 aa	Known RBP	32.87	■■■□□ 2.85
CNTNAP3B-208	ENST00000484254	HRC	P23327	699 aa		32.86	■■■□□ 2.85
CNTNAP3B-208	ENST00000484254	SENP3	Q9H4L4	574 aa	Predicted RBP	32.83	■■■□□ 2.85
CNTNAP3B-208	ENST00000484254	LRRC7	Q96NW7	1537 aa		32.81	■■■□□ 2.84
CNTNAP3B-208	ENST00000484254	CCDC144A	A2RUR9	1427 aa		32.79	■■■□□ 2.84
CNTNAP3B-208	ENST00000484254	KCNA6	P17658	529 aa		32.79	■■■□□ 2.84
CNTNAP3B-208	ENST00000484254	TBX22	Q9Y458	520 aa		32.79	■■■□□ 2.84
CNTNAP3B-208	ENST00000484254	NEXMIF	Q5QGS0	1516 aa		32.78	■■■□□ 2.84
CNTNAP3B-208	ENST00000484254	ADAMTS13	Q76LX8	1427 aa		32.77	■■■□□ 2.84
CNTNAP3B-208	ENST00000484254	DIP2A	Q14689	1571 aa		32.75	■■■□□ 2.83
CNTNAP3B-208	ENST00000484254	UBAP1L	F5GYI3	381 aa		32.74	■■■□□ 2.83
CNTNAP3B-208	ENST00000484254	NWD1	Q149M9	1564 aa		32.73	■■■□□ 2.83
CNTNAP3B-208	ENST00000484254	RPGRIP1L	Q68CZ1	1315 aa		32.73	■■■□□ 2.83
CNTNAP3B-208	ENST00000484254	SETBP1	Q9Y6X0	1596 aa		32.71	■■■□□ 2.83
CNTNAP3B-208	ENST00000484254	CHD2	O14647	1828 aa	Known RBP	32.7	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	NRXN3	Q9Y4C0	1643 aa		32.69	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	PIK3R4	Q99570	1358 aa		32.68	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	SPATA31E1	Q6ZUB1	1445 aa		32.68	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	NKTR	P30414	1462 aa	Known RBP	32.67	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	VGF	O15240	615 aa	Predicted RBP	32.67	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	TOM1	O60784	492 aa		32.65	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	PPL	O60437	1756 aa		32.65	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	XIRP1	Q702N8	1843 aa	Known RBP	32.65	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	PROSER2	Q86WR7	435 aa	Predicted RBP	32.64	■■■□□ 2.82
CNTNAP3B-208	ENST00000484254	TMEM94	Q12767	1356 aa		32.62	■■■□□ 2.81
CNTNAP3B-208	ENST00000484254	ANKRD30B	Q9BXX2	1392 aa		32.61	■■■□□ 2.81
CNTNAP3B-208	ENST00000484254	RGL3	Q3MIN7	710 aa		32.61	■■■□□ 2.81
CNTNAP3B-208	ENST00000484254	ALK	Q9UM73	1620 aa		32.58	■■■□□ 2.81
CNTNAP3B-208	ENST00000484254	PTPRU	Q92729	1446 aa		32.57	■■■□□ 2.8
CNTNAP3B-208	ENST00000484254	MET	P08581	1390 aa		32.56	■■■□□ 2.8
CNTNAP3B-208	ENST00000484254	RBM33	Q96EV2	1170 aa	Known RBP	32.55	■■■□□ 2.8
CNTNAP3B-208	ENST00000484254	AMOTL2	Q9Y2J4	779 aa		32.55	■■■□□ 2.8
CNTNAP3B-208	ENST00000484254	IFT172	Q9UG01	1749 aa		32.54	■■■□□ 2.8
CNTNAP3B-208	ENST00000484254	PIP4K2B	P78356	416 aa		32.53	■■■□□ 2.8
CNTNAP3B-208	ENST00000484254	SCAF1	Q9H7N4	1312 aa	Known RBP	32.51	■■■□□ 2.79
CNTNAP3B-208	ENST00000484254	XRN1	Q8IZH2	1706 aa	Known RBP	32.5	■■■□□ 2.79
CNTNAP3B-208	ENST00000484254	ADGRF5	Q8IZF2	1346 aa		32.5	■■■□□ 2.79
CNTNAP3B-208	ENST00000484254	NCOA3	Q9Y6Q9	1424 aa		32.49	■■■□□ 2.79
CNTNAP3B-208	ENST00000484254	SETD1A	O15047	1707 aa	Known RBP	32.48	■■■□□ 2.79
CNTNAP3B-208	ENST00000484254	TRIM26	Q12899	539 aa	Predicted RBP	32.47	■■■□□ 2.79
CNTNAP3B-208	ENST00000484254	MSH6	P52701	1360 aa		32.45	■■■□□ 2.78
CNTNAP3B-208	ENST00000484254	PIK3C2G	O75747	1445 aa		32.4	■■■□□ 2.78
CNTNAP3B-208	ENST00000484254	MYOM2	P54296	1465 aa		32.4	■■■□□ 2.78
CNTNAP3B-208	ENST00000484254	C14orf37	Q86TY3	774 aa		32.39	■■■□□ 2.78
CNTNAP3B-208	ENST00000484254	NRXN1	Q9ULB1	1477 aa		32.37	■■■□□ 2.77
CNTNAP3B-208	ENST00000484254	C19orf44	Q9H6X5	657 aa		32.36	■■■□□ 2.77
CNTNAP3B-208	ENST00000484254	HSPA1L	P34931	641 aa		32.35	■■■□□ 2.77
CNTNAP3B-208	ENST00000484254	PRAG1	Q86YV5	1406 aa		32.34	■■■□□ 2.77
CNTNAP3B-208	ENST00000484254	PTCH1	Q13635	1447 aa		32.33	■■■□□ 2.77
CNTNAP3B-208	ENST00000484254	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.32	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	FAM135B	Q49AJ0	1406 aa		32.32	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	C14orf93	Q9H972	538 aa	Known RBP	32.3	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	SLAIN2	Q9P270	581 aa		32.3	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	ROBO2	Q9HCK4	1378 aa		32.29	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	ATF3	P18847	181 aa		32.28	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	CADPS2	Q86UW7	1296 aa		32.28	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	DCAF11	Q8TEB1	546 aa		32.28	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	STAC3	Q96MF2	364 aa		32.28	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	ASXL1	Q8IXJ9	1541 aa		32.27	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	DHX57	Q6P158	1386 aa	Known RBP	32.27	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	DCC	P43146	1447 aa		32.26	■■■□□ 2.76
CNTNAP3B-208	ENST00000484254	LAMC1	P11047	1609 aa		32.26	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	LRPPRC	P42704	1394 aa	Known RBP	32.25	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	TMEM132E	Q6IEE7	984 aa		32.25	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	ADGRL3	Q9HAR2	1447 aa		32.25	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	ROBO1	Q9Y6N7	1651 aa		32.24	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	CFAP70	Q5T0N1	1121 aa		32.24	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	KDM2A	Q9Y2K7	1162 aa		32.24	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	TECPR2	O15040	1411 aa		32.22	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	ABCC11	Q96J66	1382 aa		32.21	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	NALCN	Q8IZF0	1738 aa		32.21	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	STK26	Q9P289	416 aa		32.21	■■■□□ 2.75
CNTNAP3B-208	ENST00000484254	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.19	■■■□□ 2.74
CNTNAP3B-208	ENST00000484254	KNDC1	Q76NI1	1749 aa		32.18	■■■□□ 2.74
CNTNAP3B-208	ENST00000484254	MST1R	Q04912	1400 aa		32.13	■■■□□ 2.73
CNTNAP3B-208	ENST00000484254	SIRT1	Q96EB6	747 aa		32.12	■■■□□ 2.73
CNTNAP3B-208	ENST00000484254	SIN3A	Q96ST3	1273 aa		32.12	■■■□□ 2.73
CNTNAP3B-208	ENST00000484254	WAPL	Q7Z5K2	1190 aa		32.11	■■■□□ 2.73
CNTNAP3B-208	ENST00000484254	ADGRB1	O14514	1584 aa		32.11	■■■□□ 2.73
CNTNAP3B-208	ENST00000484254	PLEKHH1	Q9ULM0	1364 aa		32.07	■■■□□ 2.73
CNTNAP3B-208	ENST00000484254	BRINP3	Q76B58	766 aa		32.06	■■■□□ 2.72
CNTNAP3B-208	ENST00000484254	PHLPP1	O60346	1717 aa		32.04	■■■□□ 2.72
CNTNAP3B-208	ENST00000484254	NEUROD1	Q13562	356 aa		32.04	■■■□□ 2.72
CNTNAP3B-208	ENST00000484254	DLC1	Q96QB1	1528 aa		32.04	■■■□□ 2.72
CNTNAP3B-208	ENST00000484254	CDC42BPG	Q6DT37	1551 aa		32.03	■■■□□ 2.72
CNTNAP3B-208	ENST00000484254	L3MBTL2	Q969R5	705 aa		32.02	■■■□□ 2.72
CNTNAP3B-208	ENST00000484254	C1orf167	Q5SNV9	1468 aa		32.02	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms