RNA–Protein interactions for RNA: ENST00000482519.1

VAMP4-204, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 3

Gene VAMP4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-204ENST00000482519 RIMS2Q9UQ26 1411 aa24.78■■□□□ 1.56
VAMP4-204ENST00000482519 UBAP1LF5GYI3 381 aa24.77■■□□□ 1.56
VAMP4-204ENST00000482519 NUTM2DQ5VT03 806 aaPredicted RBP24.77■■□□□ 1.56
VAMP4-204ENST00000482519 STRCP1A6NGW2 1772 aa24.75■■□□□ 1.55
VAMP4-204ENST00000482519 ZFYVE9O95405 1425 aa24.74■■□□□ 1.55
VAMP4-204ENST00000482519 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.72■■□□□ 1.55
VAMP4-204ENST00000482519 ZNF326Q5BKZ1 582 aaKnown RBP24.71■■□□□ 1.55
VAMP4-204ENST00000482519 FOXD1Q16676 465 aa24.69■■□□□ 1.54
VAMP4-204ENST00000482519 PLEKHG1Q9ULL1 1385 aa24.68■■□□□ 1.54
VAMP4-204ENST00000482519 SCAF1Q9H7N4 1312 aaKnown RBP24.68■■□□□ 1.54
VAMP4-204ENST00000482519 TRPM2O94759 1503 aa24.68■■□□□ 1.54
VAMP4-204ENST00000482519 SETD5Q9C0A6 1442 aa24.68■■□□□ 1.54
VAMP4-204ENST00000482519 CLTCL1P53675 1640 aa24.68■■□□□ 1.54
VAMP4-204ENST00000482519 LRRC7Q96NW7 1537 aa24.67■■□□□ 1.54
VAMP4-204ENST00000482519 PIP4K2BP78356 416 aa24.66■■□□□ 1.54
VAMP4-204ENST00000482519 TOM1O60784 492 aa24.64■■□□□ 1.54
VAMP4-204ENST00000482519 KCNA6P17658 529 aa24.64■■□□□ 1.54
VAMP4-204ENST00000482519 MPHOSPH9Q99550 1183 aa24.64■■□□□ 1.54
VAMP4-204ENST00000482519 KIF1BO60333 1816 aa24.63■■□□□ 1.53
VAMP4-204ENST00000482519 PROSER2Q86WR7 435 aaPredicted RBP24.6■■□□□ 1.53
VAMP4-204ENST00000482519 RAB3GAP2Q9H2M9 1393 aa24.59■■□□□ 1.53
VAMP4-204ENST00000482519 RBM33Q96EV2 1170 aaKnown RBP24.59■■□□□ 1.53
VAMP4-204ENST00000482519 TBX22Q9Y458 520 aa24.58■■□□□ 1.53
VAMP4-204ENST00000482519 ACIN1Q9UKV3 1341 aaKnown RBP24.57■■□□□ 1.52
VAMP4-204ENST00000482519 TMEM94Q12767 1356 aa24.55■■□□□ 1.52
VAMP4-204ENST00000482519 ADAMTS13Q76LX8 1427 aa24.55■■□□□ 1.52
VAMP4-204ENST00000482519 XIRP1Q702N8 1843 aaKnown RBP24.55■■□□□ 1.52
VAMP4-204ENST00000482519 CHD2O14647 1828 aaKnown RBP24.53■■□□□ 1.52
VAMP4-204ENST00000482519 NEXMIFQ5QGS0 1516 aa24.52■■□□□ 1.52
VAMP4-204ENST00000482519 NWD1Q149M9 1564 aa24.52■■□□□ 1.52
VAMP4-204ENST00000482519 CCDC144AA2RUR9 1427 aa24.52■■□□□ 1.52
VAMP4-204ENST00000482519 DIP2AQ14689 1571 aa24.51■■□□□ 1.51
VAMP4-204ENST00000482519 NKTRP30414 1462 aaKnown RBP24.51■■□□□ 1.51
VAMP4-204ENST00000482519 ALKQ9UM73 1620 aa24.5■■□□□ 1.51
VAMP4-204ENST00000482519 RGL3Q3MIN7 710 aa24.48■■□□□ 1.51
VAMP4-204ENST00000482519 VGFO15240 615 aaPredicted RBP24.47■■□□□ 1.51
VAMP4-204ENST00000482519 HSPA1LP34931 641 aa24.47■■□□□ 1.51
VAMP4-204ENST00000482519 NRXN3Q9Y4C0 1643 aa24.46■■□□□ 1.51
VAMP4-204ENST00000482519 SETBP1Q9Y6X0 1596 aa24.46■■□□□ 1.51
VAMP4-204ENST00000482519 RPGRIP1LQ68CZ1 1315 aa24.46■■□□□ 1.51
VAMP4-204ENST00000482519 C14orf37Q86TY3 774 aa24.46■■□□□ 1.51
VAMP4-204ENST00000482519 AMOTL2Q9Y2J4 779 aa24.46■■□□□ 1.51
VAMP4-204ENST00000482519 PIK3R4Q99570 1358 aa24.45■■□□□ 1.5
VAMP4-204ENST00000482519 MSH6P52701 1360 aa24.43■■□□□ 1.5
VAMP4-204ENST00000482519 METP08581 1390 aa24.42■■□□□ 1.5
VAMP4-204ENST00000482519 PTPRUQ92729 1446 aa24.42■■□□□ 1.5
VAMP4-204ENST00000482519 PPLO60437 1756 aa24.42■■□□□ 1.5
VAMP4-204ENST00000482519 SPATA31E1Q6ZUB1 1445 aa24.38■■□□□ 1.49
VAMP4-204ENST00000482519 HRCP23327 699 aa24.38■■□□□ 1.49
VAMP4-204ENST00000482519 ADGRF5Q8IZF2 1346 aa24.35■■□□□ 1.49
VAMP4-204ENST00000482519 XRN1Q8IZH2 1706 aaKnown RBP24.33■■□□□ 1.49
VAMP4-204ENST00000482519 C19orf44Q9H6X5 657 aa24.33■■□□□ 1.49
VAMP4-204ENST00000482519 SLAIN2Q9P270 581 aa24.33■■□□□ 1.49
VAMP4-204ENST00000482519 NCOA3Q9Y6Q9 1424 aa24.33■■□□□ 1.49
VAMP4-204ENST00000482519 ANKRD30BQ9BXX2 1392 aa24.32■■□□□ 1.48
VAMP4-204ENST00000482519 DISP3Q9P2K9 1392 aa24.32■■□□□ 1.48
VAMP4-204ENST00000482519 ATF3P18847 181 aa24.32■■□□□ 1.48
VAMP4-204ENST00000482519 IFT172Q9UG01 1749 aa24.3■■□□□ 1.48
VAMP4-204ENST00000482519 FAM135BQ49AJ0 1406 aa24.29■■□□□ 1.48
VAMP4-204ENST00000482519 ROBO1Q9Y6N7 1651 aa24.29■■□□□ 1.48
VAMP4-204ENST00000482519 SETD1AO15047 1707 aaKnown RBP24.29■■□□□ 1.48
VAMP4-204ENST00000482519 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.29■■□□□ 1.48
VAMP4-204ENST00000482519 CADPS2Q86UW7 1296 aa24.28■■□□□ 1.48
VAMP4-204ENST00000482519 STK26Q9P289 416 aa24.23■■□□□ 1.47
VAMP4-204ENST00000482519 ROBO2Q9HCK4 1378 aa24.22■■□□□ 1.47
VAMP4-204ENST00000482519 TMEM132EQ6IEE7 984 aa24.22■■□□□ 1.47
VAMP4-204ENST00000482519 PIK3C2GO75747 1445 aa24.2■■□□□ 1.46
VAMP4-204ENST00000482519 KDM2AQ9Y2K7 1162 aa24.2■■□□□ 1.46
VAMP4-204ENST00000482519 PTCH1Q13635 1447 aa24.19■■□□□ 1.46
VAMP4-204ENST00000482519 ADGRL3Q9HAR2 1447 aa24.18■■□□□ 1.46
VAMP4-204ENST00000482519 DCAF11Q8TEB1 546 aa24.17■■□□□ 1.46
VAMP4-204ENST00000482519 NALCNQ8IZF0 1738 aa24.17■■□□□ 1.46
VAMP4-204ENST00000482519 DCCP43146 1447 aa24.17■■□□□ 1.46
VAMP4-204ENST00000482519 MYOM2P54296 1465 aa24.16■■□□□ 1.46
VAMP4-204ENST00000482519 CFAP70Q5T0N1 1121 aa24.16■■□□□ 1.46
VAMP4-204ENST00000482519 PHLPP1O60346 1717 aa24.15■■□□□ 1.46
VAMP4-204ENST00000482519 C14orf93Q9H972 538 aaKnown RBP24.15■■□□□ 1.46
VAMP4-204ENST00000482519 MED1Q15648 1581 aaPredicted RBP24.14■■□□□ 1.45
VAMP4-204ENST00000482519 LRPPRCP42704 1394 aaKnown RBP24.13■■□□□ 1.45
VAMP4-204ENST00000482519 NRXN1Q9ULB1 1477 aa24.13■■□□□ 1.45
VAMP4-204ENST00000482519 ASXL1Q8IXJ9 1541 aa24.12■■□□□ 1.45
VAMP4-204ENST00000482519 BRINP3Q76B58 766 aa24.12■■□□□ 1.45
VAMP4-204ENST00000482519 WAPLQ7Z5K2 1190 aa24.12■■□□□ 1.45
VAMP4-204ENST00000482519 MST1RQ04912 1400 aa24.11■■□□□ 1.45
VAMP4-204ENST00000482519 PRAG1Q86YV5 1406 aa24.1■■□□□ 1.45
VAMP4-204ENST00000482519 YTHDC2Q9H6S0 1430 aaKnown RBP24.1■■□□□ 1.45
VAMP4-204ENST00000482519 ABCC11Q96J66 1382 aa24.09■■□□□ 1.45
VAMP4-204ENST00000482519 PHF23Q9BUL5 403 aaPredicted RBP24.09■■□□□ 1.45
VAMP4-204ENST00000482519 DHX57Q6P158 1386 aaKnown RBP24.08■■□□□ 1.45
VAMP4-204ENST00000482519 LAMC1P11047 1609 aa24.08■■□□□ 1.45
VAMP4-204ENST00000482519 ILDR2Q71H61 639 aa24.07■■□□□ 1.44
VAMP4-204ENST00000482519 TECPR2O15040 1411 aa24.07■■□□□ 1.44
VAMP4-204ENST00000482519 TRIM26Q12899 539 aaPredicted RBP24.06■■□□□ 1.44
VAMP4-204ENST00000482519 PLEKHH1Q9ULM0 1364 aa24.05■■□□□ 1.44
VAMP4-204ENST00000482519 KNDC1Q76NI1 1749 aa24.04■■□□□ 1.44
VAMP4-204ENST00000482519 COL16A1Q07092 1604 aaPredicted RBP24.04■■□□□ 1.44
VAMP4-204ENST00000482519 STAC3Q96MF2 364 aa24.04■■□□□ 1.44
VAMP4-204ENST00000482519 AHDC1Q5TGY3 1603 aaPredicted RBP24.03■■□□□ 1.44
VAMP4-204ENST00000482519 C1orf167Q5SNV9 1468 aa24.03■■□□□ 1.44
VAMP4-204ENST00000482519 DDX17Q92841 729 aaKnown RBP24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms