RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 PLEKHG1Q9ULL1 1385 aa18.5■□□□□ 0.55
SQSTM1-207ENST00000481335 SPHKAPQ2M3C7 1700 aa18.49■□□□□ 0.55
SQSTM1-207ENST00000481335 SCAF1Q9H7N4 1312 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-207ENST00000481335 DIP2AQ14689 1571 aa18.48■□□□□ 0.55
SQSTM1-207ENST00000481335 PIP4K2BP78356 416 aa18.48■□□□□ 0.55
SQSTM1-207ENST00000481335 RIMS2Q9UQ26 1411 aa18.48■□□□□ 0.55
SQSTM1-207ENST00000481335 CHD2O14647 1828 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-207ENST00000481335 KCNA6P17658 529 aa18.47■□□□□ 0.55
SQSTM1-207ENST00000481335 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.47■□□□□ 0.55
SQSTM1-207ENST00000481335 ITGAEP38570 1179 aa18.46■□□□□ 0.55
SQSTM1-207ENST00000481335 HSPA1LP34931 641 aa18.45■□□□□ 0.54
SQSTM1-207ENST00000481335 NAIPQ13075 1403 aa18.42■□□□□ 0.54
SQSTM1-207ENST00000481335 PPP1R15AO75807 674 aaPredicted RBP18.42■□□□□ 0.54
SQSTM1-207ENST00000481335 PPARGC1BQ86YN6 1023 aaKnown RBP18.42■□□□□ 0.54
SQSTM1-207ENST00000481335 SLC26A8Q96RN1 970 aa18.42■□□□□ 0.54
SQSTM1-207ENST00000481335 MED1Q15648 1581 aaPredicted RBP18.42■□□□□ 0.54
SQSTM1-207ENST00000481335 TMEM94Q12767 1356 aa18.42■□□□□ 0.54
SQSTM1-207ENST00000481335 PIK3R4Q99570 1358 aa18.41■□□□□ 0.54
SQSTM1-207ENST00000481335 HFM1A2PYH4 1435 aa18.4■□□□□ 0.54
SQSTM1-207ENST00000481335 NCOA3Q9Y6Q9 1424 aa18.4■□□□□ 0.54
SQSTM1-207ENST00000481335 TRPM2O94759 1503 aa18.39■□□□□ 0.54
SQSTM1-207ENST00000481335 TBX22Q9Y458 520 aa18.39■□□□□ 0.53
SQSTM1-207ENST00000481335 FAM135BQ49AJ0 1406 aa18.39■□□□□ 0.53
SQSTM1-207ENST00000481335 BCANQ96GW7 911 aa18.38■□□□□ 0.53
SQSTM1-207ENST00000481335 CHGAP10645 457 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-207ENST00000481335 ADAMTS13Q76LX8 1427 aa18.37■□□□□ 0.53
SQSTM1-207ENST00000481335 KIF1BO60333 1816 aa18.37■□□□□ 0.53
SQSTM1-207ENST00000481335 MSH6P52701 1360 aa18.36■□□□□ 0.53
SQSTM1-207ENST00000481335 PROSER2Q86WR7 435 aaPredicted RBP18.36■□□□□ 0.53
SQSTM1-207ENST00000481335 SETBP1Q9Y6X0 1596 aa18.35■□□□□ 0.53
SQSTM1-207ENST00000481335 ROBO1Q9Y6N7 1651 aa18.34■□□□□ 0.53
SQSTM1-207ENST00000481335 CLTCL1P53675 1640 aa18.34■□□□□ 0.53
SQSTM1-207ENST00000481335 NRXN3Q9Y4C0 1643 aa18.33■□□□□ 0.52
SQSTM1-207ENST00000481335 NEXMIFQ5QGS0 1516 aa18.3■□□□□ 0.52
SQSTM1-207ENST00000481335 XRN1Q8IZH2 1706 aaKnown RBP18.29■□□□□ 0.52
SQSTM1-207ENST00000481335 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.27■□□□□ 0.52
SQSTM1-207ENST00000481335 DCCP43146 1447 aa18.26■□□□□ 0.51
SQSTM1-207ENST00000481335 ACIN1Q9UKV3 1341 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-207ENST00000481335 ZNF326Q5BKZ1 582 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-207ENST00000481335 NUTM2DQ5VT03 806 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-207ENST00000481335 PHLPP1O60346 1717 aa18.23■□□□□ 0.51
SQSTM1-207ENST00000481335 CADPS2Q86UW7 1296 aa18.23■□□□□ 0.51
SQSTM1-207ENST00000481335 TRIM52Q96A61 297 aa18.23■□□□□ 0.51
SQSTM1-207ENST00000481335 PHF23Q9BUL5 403 aaPredicted RBP18.23■□□□□ 0.51
SQSTM1-207ENST00000481335 SLAIN2Q9P270 581 aa18.23■□□□□ 0.51
SQSTM1-207ENST00000481335 PTPRUQ92729 1446 aa18.23■□□□□ 0.51
SQSTM1-207ENST00000481335 RBM33Q96EV2 1170 aaKnown RBP18.22■□□□□ 0.51
SQSTM1-207ENST00000481335 SLC4A1APQ9BWU0 796 aaKnown RBP18.22■□□□□ 0.51
SQSTM1-207ENST00000481335 C19orf44Q9H6X5 657 aa18.22■□□□□ 0.51
SQSTM1-207ENST00000481335 AMOTL2Q9Y2J4 779 aa18.22■□□□□ 0.51
SQSTM1-207ENST00000481335 PPLO60437 1756 aa18.21■□□□□ 0.51
SQSTM1-207ENST00000481335 RPGRIP1LQ68CZ1 1315 aa18.21■□□□□ 0.51
SQSTM1-207ENST00000481335 SETD1AO15047 1707 aaKnown RBP18.2■□□□□ 0.5
SQSTM1-207ENST00000481335 SENP3Q9H4L4 574 aaPredicted RBP18.2■□□□□ 0.5
SQSTM1-207ENST00000481335 AHDC1Q5TGY3 1603 aaPredicted RBP18.2■□□□□ 0.5
SQSTM1-207ENST00000481335 C14orf37Q86TY3 774 aa18.19■□□□□ 0.5
SQSTM1-207ENST00000481335 PRAG1Q86YV5 1406 aa18.19■□□□□ 0.5
SQSTM1-207ENST00000481335 COL16A1Q07092 1604 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-207ENST00000481335 VGFO15240 615 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-207ENST00000481335 ATF3P18847 181 aa18.18■□□□□ 0.5
SQSTM1-207ENST00000481335 METP08581 1390 aa18.17■□□□□ 0.5
SQSTM1-207ENST00000481335 PTCH1Q13635 1447 aa18.16■□□□□ 0.5
SQSTM1-207ENST00000481335 JCADQ9P266 1359 aa18.16■□□□□ 0.5
SQSTM1-207ENST00000481335 CCDC144AA2RUR9 1427 aa18.15■□□□□ 0.5
SQSTM1-207ENST00000481335 ADGRL3Q9HAR2 1447 aa18.15■□□□□ 0.5
SQSTM1-207ENST00000481335 SHPRHQ149N8 1683 aa18.14■□□□□ 0.49
SQSTM1-207ENST00000481335 NALCNQ8IZF0 1738 aa18.14■□□□□ 0.49
SQSTM1-207ENST00000481335 IFT172Q9UG01 1749 aa18.13■□□□□ 0.49
SQSTM1-207ENST00000481335 MST1RQ04912 1400 aa18.11■□□□□ 0.49
SQSTM1-207ENST00000481335 NHSL1Q5SYE7 1610 aa18.11■□□□□ 0.49
SQSTM1-207ENST00000481335 ASXL1Q8IXJ9 1541 aa18.1■□□□□ 0.49
SQSTM1-207ENST00000481335 SPATA31E1Q6ZUB1 1445 aa18.09■□□□□ 0.49
SQSTM1-207ENST00000481335 SPATA31A6Q5VVP1 1343 aa18.09■□□□□ 0.49
SQSTM1-207ENST00000481335 MPHOSPH9Q99550 1183 aa18.09■□□□□ 0.49
SQSTM1-207ENST00000481335 SETD5Q9C0A6 1442 aa18.08■□□□□ 0.49
SQSTM1-207ENST00000481335 ANKRD30BQ9BXX2 1392 aa18.08■□□□□ 0.49
SQSTM1-207ENST00000481335 BRINP3Q76B58 766 aa18.07■□□□□ 0.48
SQSTM1-207ENST00000481335 LAMC1P11047 1609 aa18.06■□□□□ 0.48
SQSTM1-207ENST00000481335 KNDC1Q76NI1 1749 aa18.06■□□□□ 0.48
SQSTM1-207ENST00000481335 RGS17Q9UGC6 210 aaPredicted RBP18.05■□□□□ 0.48
SQSTM1-207ENST00000481335 FOXD1Q16676 465 aa18.03■□□□□ 0.48
SQSTM1-207ENST00000481335 TECPR2O15040 1411 aa18.03■□□□□ 0.48
SQSTM1-207ENST00000481335 ROBO2Q9HCK4 1378 aa18.03■□□□□ 0.48
SQSTM1-207ENST00000481335 CDC42BPGQ6DT37 1551 aa18.02■□□□□ 0.48
SQSTM1-207ENST00000481335 PIK3C2GO75747 1445 aa18.01■□□□□ 0.47
SQSTM1-207ENST00000481335 LRP6O75581 1613 aa18■□□□□ 0.47
SQSTM1-207ENST00000481335 MYOM2P54296 1465 aa18■□□□□ 0.47
SQSTM1-207ENST00000481335 C1orf167Q5SNV9 1468 aa18■□□□□ 0.47
SQSTM1-207ENST00000481335 RAB3GAP2Q9H2M9 1393 aa17.99■□□□□ 0.47
SQSTM1-207ENST00000481335 NRXN1Q9ULB1 1477 aa17.98■□□□□ 0.47
SQSTM1-207ENST00000481335 ADGRF5Q8IZF2 1346 aa17.98■□□□□ 0.47
SQSTM1-207ENST00000481335 LRPPRCP42704 1394 aaKnown RBP17.97■□□□□ 0.47
SQSTM1-207ENST00000481335 LRRC59Q96AG4 307 aaKnown RBP17.97■□□□□ 0.47
SQSTM1-207ENST00000481335 ABCC11Q96J66 1382 aa17.96■□□□□ 0.47
SQSTM1-207ENST00000481335 RGL3Q3MIN7 710 aa17.96■□□□□ 0.47
SQSTM1-207ENST00000481335 HRCP23327 699 aa17.95■□□□□ 0.46
SQSTM1-207ENST00000481335 POTEAQ6S8J7 498 aa17.95■□□□□ 0.46
SQSTM1-207ENST00000481335 ZNF772Q68DY9 489 aaPredicted RBP17.94■□□□□ 0.46
SQSTM1-207ENST00000481335 MEX3CQ5U5Q3 659 aaKnown RBP17.93■□□□□ 0.46
SQSTM1-207ENST00000481335 PNPLA6Q8IY17 1366 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms