RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 EID1Q9Y6B2 187 aa18.21■□□□□ 0.51
PTPRF-213ENST00000481019 STRCP1A6NGW2 1772 aa18.21■□□□□ 0.51
PTPRF-213ENST00000481019 ILDR1Q86SU0 546 aaPredicted RBP18.16■□□□□ 0.5
PTPRF-213ENST00000481019 SLC26A8Q96RN1 970 aa18.16■□□□□ 0.5
PTPRF-213ENST00000481019 KIF1BO60333 1816 aa18.16■□□□□ 0.5
PTPRF-213ENST00000481019 PLEKHG1Q9ULL1 1385 aa18.15■□□□□ 0.5
PTPRF-213ENST00000481019 NEXMIFQ5QGS0 1516 aa18.14■□□□□ 0.49
PTPRF-213ENST00000481019 HRCP23327 699 aa18.14■□□□□ 0.49
PTPRF-213ENST00000481019 ZNF326Q5BKZ1 582 aaKnown RBP18.12■□□□□ 0.49
PTPRF-213ENST00000481019 ADAMTS13Q76LX8 1427 aa18.12■□□□□ 0.49
PTPRF-213ENST00000481019 PPP1R15AO75807 674 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-213ENST00000481019 NRXN3Q9Y4C0 1643 aa18.11■□□□□ 0.49
PTPRF-213ENST00000481019 CCDC144AA2RUR9 1427 aa18.1■□□□□ 0.49
PTPRF-213ENST00000481019 SPATA31E1Q6ZUB1 1445 aa18.1■□□□□ 0.49
PTPRF-213ENST00000481019 TRIM26Q12899 539 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-213ENST00000481019 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.1■□□□□ 0.49
PTPRF-213ENST00000481019 FBXO41Q8TF61 875 aa18.1■□□□□ 0.49
PTPRF-213ENST00000481019 CPS1P31327 1500 aa18.09■□□□□ 0.49
PTPRF-213ENST00000481019 ACIN1Q9UKV3 1341 aaKnown RBP18.09■□□□□ 0.49
PTPRF-213ENST00000481019 BCANQ96GW7 911 aa18.09■□□□□ 0.49
PTPRF-213ENST00000481019 ANKRD30BQ9BXX2 1392 aa18.08■□□□□ 0.49
PTPRF-213ENST00000481019 LRRC7Q96NW7 1537 aa18.08■□□□□ 0.48
PTPRF-213ENST00000481019 PPLO60437 1756 aa18.07■□□□□ 0.48
PTPRF-213ENST00000481019 HDGFP51858 240 aaKnown RBP18.06■□□□□ 0.48
PTPRF-213ENST00000481019 IQSEC2Q5JU85 1478 aa18.06■□□□□ 0.48
PTPRF-213ENST00000481019 XIRP1Q702N8 1843 aaKnown RBP18.05■□□□□ 0.48
PTPRF-213ENST00000481019 SETBP1Q9Y6X0 1596 aa18.05■□□□□ 0.48
PTPRF-213ENST00000481019 RGL3Q3MIN7 710 aa18.05■□□□□ 0.48
PTPRF-213ENST00000481019 NWD1Q149M9 1564 aa18.04■□□□□ 0.48
PTPRF-213ENST00000481019 TBX22Q9Y458 520 aa18.04■□□□□ 0.48
PTPRF-213ENST00000481019 CHD2O14647 1828 aaKnown RBP18.04■□□□□ 0.48
PTPRF-213ENST00000481019 PTPRUQ92729 1446 aa18.04■□□□□ 0.48
PTPRF-213ENST00000481019 IFT172Q9UG01 1749 aa18.03■□□□□ 0.48
PTPRF-213ENST00000481019 KCNA6P17658 529 aa18.03■□□□□ 0.48
PTPRF-213ENST00000481019 RBM33Q96EV2 1170 aaKnown RBP18.03■□□□□ 0.48
PTPRF-213ENST00000481019 ALKQ9UM73 1620 aa18.02■□□□□ 0.48
PTPRF-213ENST00000481019 DIP2AQ14689 1571 aa18.02■□□□□ 0.48
PTPRF-213ENST00000481019 METP08581 1390 aa18.01■□□□□ 0.47
PTPRF-213ENST00000481019 RPGRIP1LQ68CZ1 1315 aa18■□□□□ 0.47
PTPRF-213ENST00000481019 ADGRF5Q8IZF2 1346 aa18■□□□□ 0.47
PTPRF-213ENST00000481019 SETD1AO15047 1707 aaKnown RBP18■□□□□ 0.47
PTPRF-213ENST00000481019 TMEM94Q12767 1356 aa17.97■□□□□ 0.47
PTPRF-213ENST00000481019 UBAP1LF5GYI3 381 aa17.97■□□□□ 0.47
PTPRF-213ENST00000481019 VGFO15240 615 aaPredicted RBP17.97■□□□□ 0.47
PTPRF-213ENST00000481019 NKTRP30414 1462 aaKnown RBP17.96■□□□□ 0.47
PTPRF-213ENST00000481019 PROSER2Q86WR7 435 aaPredicted RBP17.96■□□□□ 0.47
PTPRF-213ENST00000481019 XRN1Q8IZH2 1706 aaKnown RBP17.95■□□□□ 0.46
PTPRF-213ENST00000481019 PIK3R4Q99570 1358 aa17.94■□□□□ 0.46
PTPRF-213ENST00000481019 AMOTL2Q9Y2J4 779 aa17.94■□□□□ 0.46
PTPRF-213ENST00000481019 DHX57Q6P158 1386 aaKnown RBP17.92■□□□□ 0.46
PTPRF-213ENST00000481019 ASXL1Q8IXJ9 1541 aa17.92■□□□□ 0.46
PTPRF-213ENST00000481019 PIK3C2GO75747 1445 aa17.91■□□□□ 0.46
PTPRF-213ENST00000481019 NRXN1Q9ULB1 1477 aa17.91■□□□□ 0.46
PTPRF-213ENST00000481019 PIP4K2BP78356 416 aa17.9■□□□□ 0.46
PTPRF-213ENST00000481019 PCGF6Q9BYE7 350 aa17.9■□□□□ 0.46
PTPRF-213ENST00000481019 MYOM2P54296 1465 aa17.89■□□□□ 0.45
PTPRF-213ENST00000481019 SIN3AQ96ST3 1273 aa17.88■□□□□ 0.45
PTPRF-213ENST00000481019 TMEM132EQ6IEE7 984 aa17.87■□□□□ 0.45
PTPRF-213ENST00000481019 TOM1O60784 492 aa17.86■□□□□ 0.45
PTPRF-213ENST00000481019 CFAP70Q5T0N1 1121 aa17.86■□□□□ 0.45
PTPRF-213ENST00000481019 DCAF11Q8TEB1 546 aa17.86■□□□□ 0.45
PTPRF-213ENST00000481019 KDM2AQ9Y2K7 1162 aa17.86■□□□□ 0.45
PTPRF-213ENST00000481019 ROBO2Q9HCK4 1378 aa17.86■□□□□ 0.45
PTPRF-213ENST00000481019 SCAF1Q9H7N4 1312 aaKnown RBP17.85■□□□□ 0.45
PTPRF-213ENST00000481019 C14orf93Q9H972 538 aaKnown RBP17.84■□□□□ 0.45
PTPRF-213ENST00000481019 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-213ENST00000481019 PTCH1Q13635 1447 aa17.81■□□□□ 0.44
PTPRF-213ENST00000481019 PRAG1Q86YV5 1406 aa17.81■□□□□ 0.44
PTPRF-213ENST00000481019 NCOA3Q9Y6Q9 1424 aa17.81■□□□□ 0.44
PTPRF-213ENST00000481019 NALCNQ8IZF0 1738 aa17.81■□□□□ 0.44
PTPRF-213ENST00000481019 MSH6P52701 1360 aa17.81■□□□□ 0.44
PTPRF-213ENST00000481019 STK26Q9P289 416 aa17.81■□□□□ 0.44
PTPRF-213ENST00000481019 LRPPRCP42704 1394 aaKnown RBP17.8■□□□□ 0.44
PTPRF-213ENST00000481019 HSPA1LP34931 641 aa17.8■□□□□ 0.44
PTPRF-213ENST00000481019 NEUROD1Q13562 356 aa17.8■□□□□ 0.44
PTPRF-213ENST00000481019 C14orf37Q86TY3 774 aa17.79■□□□□ 0.44
PTPRF-213ENST00000481019 YTHDC2Q9H6S0 1430 aaKnown RBP17.79■□□□□ 0.44
PTPRF-213ENST00000481019 ADGRB1O14514 1584 aa17.79■□□□□ 0.44
PTPRF-213ENST00000481019 PLEKHH1Q9ULM0 1364 aa17.79■□□□□ 0.44
PTPRF-213ENST00000481019 C19orf44Q9H6X5 657 aa17.78■□□□□ 0.44
PTPRF-213ENST00000481019 LAMC1P11047 1609 aa17.78■□□□□ 0.44
PTPRF-213ENST00000481019 KNDC1Q76NI1 1749 aa17.78■□□□□ 0.44
PTPRF-213ENST00000481019 WAPLQ7Z5K2 1190 aa17.77■□□□□ 0.44
PTPRF-213ENST00000481019 L3MBTL2Q969R5 705 aa17.77■□□□□ 0.44
PTPRF-213ENST00000481019 TECPR2O15040 1411 aa17.77■□□□□ 0.44
PTPRF-213ENST00000481019 ADGRL3Q9HAR2 1447 aa17.77■□□□□ 0.44
PTPRF-213ENST00000481019 ROBO1Q9Y6N7 1651 aa17.77■□□□□ 0.43
PTPRF-213ENST00000481019 SLAIN2Q9P270 581 aa17.76■□□□□ 0.43
PTPRF-213ENST00000481019 ABCC11Q96J66 1382 aa17.76■□□□□ 0.43
PTPRF-213ENST00000481019 FAM135BQ49AJ0 1406 aa17.74■□□□□ 0.43
PTPRF-213ENST00000481019 MST1RQ04912 1400 aa17.72■□□□□ 0.43
PTPRF-213ENST00000481019 ATF3P18847 181 aa17.72■□□□□ 0.43
PTPRF-213ENST00000481019 DCCP43146 1447 aa17.72■□□□□ 0.43
PTPRF-213ENST00000481019 CADPS2Q86UW7 1296 aa17.71■□□□□ 0.43
PTPRF-213ENST00000481019 STAC3Q96MF2 364 aa17.71■□□□□ 0.43
PTPRF-213ENST00000481019 NBPF1Q3BBV0 1214 aa17.7■□□□□ 0.42
PTPRF-213ENST00000481019 TRAK1Q9UPV9 953 aa17.69■□□□□ 0.42
PTPRF-213ENST00000481019 PRAM1Q96QH2 718 aa17.68■□□□□ 0.42
PTPRF-213ENST00000481019 KIAA1210Q9ULL0 1709 aa17.68■□□□□ 0.42
PTPRF-213ENST00000481019 DLC1Q96QB1 1528 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms