RNA–Protein interactions for RNA: ENST00000480923.5

VPS36-204, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 3

Gene VPS36, Length 614 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-204ENST00000480923 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.07■■■□□ 2.4
VPS36-204ENST00000480923 SENP3Q9H4L4 574 aaPredicted RBP30.07■■■□□ 2.4
VPS36-204ENST00000480923 SLC26A8Q96RN1 970 aa30.06■■■□□ 2.4
VPS36-204ENST00000480923 SETD5Q9C0A6 1442 aa30.05■■■□□ 2.4
VPS36-204ENST00000480923 TRPM2O94759 1503 aa30.04■■■□□ 2.4
VPS36-204ENST00000480923 UBAP1LF5GYI3 381 aa30.03■■■□□ 2.4
VPS36-204ENST00000480923 NUTM2DQ5VT03 806 aaPredicted RBP30.03■■■□□ 2.4
VPS36-204ENST00000480923 PLEKHG1Q9ULL1 1385 aa30.03■■■□□ 2.4
VPS36-204ENST00000480923 ZNF326Q5BKZ1 582 aaKnown RBP30.01■■■□□ 2.39
VPS36-204ENST00000480923 CLTCL1P53675 1640 aa30■■■□□ 2.39
VPS36-204ENST00000480923 STRCP1A6NGW2 1772 aa29.98■■■□□ 2.39
VPS36-204ENST00000480923 FOXD1Q16676 465 aa29.98■■■□□ 2.39
VPS36-204ENST00000480923 MPHOSPH9Q99550 1183 aa29.98■■■□□ 2.39
VPS36-204ENST00000480923 ACIN1Q9UKV3 1341 aaKnown RBP29.97■■■□□ 2.39
VPS36-204ENST00000480923 LRRC7Q96NW7 1537 aa29.96■■■□□ 2.39
VPS36-204ENST00000480923 RAB3GAP2Q9H2M9 1393 aa29.95■■■□□ 2.39
VPS36-204ENST00000480923 KCNA6P17658 529 aa29.94■■■□□ 2.38
VPS36-204ENST00000480923 TOM1O60784 492 aa29.91■■■□□ 2.38
VPS36-204ENST00000480923 TBX22Q9Y458 520 aa29.9■■■□□ 2.38
VPS36-204ENST00000480923 SCAF1Q9H7N4 1312 aaKnown RBP29.87■■■□□ 2.37
VPS36-204ENST00000480923 ADAMTS13Q76LX8 1427 aa29.87■■■□□ 2.37
VPS36-204ENST00000480923 KIF1BO60333 1816 aa29.86■■■□□ 2.37
VPS36-204ENST00000480923 PIP4K2BP78356 416 aa29.85■■■□□ 2.37
VPS36-204ENST00000480923 PROSER2Q86WR7 435 aaPredicted RBP29.85■■■□□ 2.37
VPS36-204ENST00000480923 CCDC144AA2RUR9 1427 aa29.84■■■□□ 2.37
VPS36-204ENST00000480923 DIP2AQ14689 1571 aa29.82■■■□□ 2.36
VPS36-204ENST00000480923 NWD1Q149M9 1564 aa29.82■■■□□ 2.36
VPS36-204ENST00000480923 NEXMIFQ5QGS0 1516 aa29.82■■■□□ 2.36
VPS36-204ENST00000480923 TMEM94Q12767 1356 aa29.82■■■□□ 2.36
VPS36-204ENST00000480923 NKTRP30414 1462 aaKnown RBP29.81■■■□□ 2.36
VPS36-204ENST00000480923 RBM33Q96EV2 1170 aaKnown RBP29.79■■■□□ 2.36
VPS36-204ENST00000480923 PIK3R4Q99570 1358 aa29.77■■■□□ 2.36
VPS36-204ENST00000480923 RPGRIP1LQ68CZ1 1315 aa29.77■■■□□ 2.36
VPS36-204ENST00000480923 VGFO15240 615 aaPredicted RBP29.76■■■□□ 2.35
VPS36-204ENST00000480923 SETBP1Q9Y6X0 1596 aa29.76■■■□□ 2.35
VPS36-204ENST00000480923 HRCP23327 699 aa29.75■■■□□ 2.35
VPS36-204ENST00000480923 CHD2O14647 1828 aaKnown RBP29.73■■■□□ 2.35
VPS36-204ENST00000480923 RGL3Q3MIN7 710 aa29.73■■■□□ 2.35
VPS36-204ENST00000480923 ALKQ9UM73 1620 aa29.73■■■□□ 2.35
VPS36-204ENST00000480923 NRXN3Q9Y4C0 1643 aa29.73■■■□□ 2.35
VPS36-204ENST00000480923 XIRP1Q702N8 1843 aaKnown RBP29.72■■■□□ 2.35
VPS36-204ENST00000480923 AMOTL2Q9Y2J4 779 aa29.71■■■□□ 2.35
VPS36-204ENST00000480923 SPATA31E1Q6ZUB1 1445 aa29.69■■■□□ 2.34
VPS36-204ENST00000480923 PTPRUQ92729 1446 aa29.69■■■□□ 2.34
VPS36-204ENST00000480923 METP08581 1390 aa29.67■■■□□ 2.34
VPS36-204ENST00000480923 MSH6P52701 1360 aa29.67■■■□□ 2.34
VPS36-204ENST00000480923 C14orf37Q86TY3 774 aa29.66■■■□□ 2.34
VPS36-204ENST00000480923 HSPA1LP34931 641 aa29.65■■■□□ 2.34
VPS36-204ENST00000480923 PPLO60437 1756 aa29.64■■■□□ 2.34
VPS36-204ENST00000480923 NCOA3Q9Y6Q9 1424 aa29.62■■■□□ 2.33
VPS36-204ENST00000480923 ANKRD30BQ9BXX2 1392 aa29.61■■■□□ 2.33
VPS36-204ENST00000480923 ADGRF5Q8IZF2 1346 aa29.6■■■□□ 2.33
VPS36-204ENST00000480923 XRN1Q8IZH2 1706 aaKnown RBP29.57■■■□□ 2.32
VPS36-204ENST00000480923 C19orf44Q9H6X5 657 aa29.53■■■□□ 2.32
VPS36-204ENST00000480923 FAM135BQ49AJ0 1406 aa29.53■■■□□ 2.32
VPS36-204ENST00000480923 SLAIN2Q9P270 581 aa29.52■■■□□ 2.32
VPS36-204ENST00000480923 ATF3P18847 181 aa29.51■■■□□ 2.31
VPS36-204ENST00000480923 SETD1AO15047 1707 aaKnown RBP29.51■■■□□ 2.31
VPS36-204ENST00000480923 IFT172Q9UG01 1749 aa29.51■■■□□ 2.31
VPS36-204ENST00000480923 CADPS2Q86UW7 1296 aa29.49■■■□□ 2.31
VPS36-204ENST00000480923 PIK3C2GO75747 1445 aa29.46■■■□□ 2.31
VPS36-204ENST00000480923 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.45■■■□□ 2.31
VPS36-204ENST00000480923 PTCH1Q13635 1447 aa29.45■■■□□ 2.3
VPS36-204ENST00000480923 ROBO1Q9Y6N7 1651 aa29.44■■■□□ 2.3
VPS36-204ENST00000480923 MYOM2P54296 1465 aa29.44■■■□□ 2.3
VPS36-204ENST00000480923 ROBO2Q9HCK4 1378 aa29.44■■■□□ 2.3
VPS36-204ENST00000480923 DISP3Q9P2K9 1392 aa29.42■■■□□ 2.3
VPS36-204ENST00000480923 DCCP43146 1447 aa29.41■■■□□ 2.3
VPS36-204ENST00000480923 ADGRL3Q9HAR2 1447 aa29.41■■■□□ 2.3
VPS36-204ENST00000480923 STK26Q9P289 416 aa29.41■■■□□ 2.3
VPS36-204ENST00000480923 TMEM132EQ6IEE7 984 aa29.4■■■□□ 2.3
VPS36-204ENST00000480923 NRXN1Q9ULB1 1477 aa29.4■■■□□ 2.3
VPS36-204ENST00000480923 PRAG1Q86YV5 1406 aa29.39■■■□□ 2.3
VPS36-204ENST00000480923 DCAF11Q8TEB1 546 aa29.38■■■□□ 2.29
VPS36-204ENST00000480923 C14orf93Q9H972 538 aaKnown RBP29.38■■■□□ 2.29
VPS36-204ENST00000480923 KDM2AQ9Y2K7 1162 aa29.38■■■□□ 2.29
VPS36-204ENST00000480923 LRPPRCP42704 1394 aaKnown RBP29.37■■■□□ 2.29
VPS36-204ENST00000480923 CFAP70Q5T0N1 1121 aa29.36■■■□□ 2.29
VPS36-204ENST00000480923 ASXL1Q8IXJ9 1541 aa29.35■■■□□ 2.29
VPS36-204ENST00000480923 TRIM26Q12899 539 aaPredicted RBP29.35■■■□□ 2.29
VPS36-204ENST00000480923 NALCNQ8IZF0 1738 aa29.34■■■□□ 2.29
VPS36-204ENST00000480923 MST1RQ04912 1400 aa29.32■■■□□ 2.28
VPS36-204ENST00000480923 YTHDC2Q9H6S0 1430 aaKnown RBP29.32■■■□□ 2.28
VPS36-204ENST00000480923 ABCC11Q96J66 1382 aa29.32■■■□□ 2.28
VPS36-204ENST00000480923 TECPR2O15040 1411 aa29.31■■■□□ 2.28
VPS36-204ENST00000480923 DHX57Q6P158 1386 aaKnown RBP29.3■■■□□ 2.28
VPS36-204ENST00000480923 STAC3Q96MF2 364 aa29.3■■■□□ 2.28
VPS36-204ENST00000480923 BRINP3Q76B58 766 aa29.29■■■□□ 2.28
VPS36-204ENST00000480923 WAPLQ7Z5K2 1190 aa29.29■■■□□ 2.28
VPS36-204ENST00000480923 LAMC1P11047 1609 aa29.29■■■□□ 2.28
VPS36-204ENST00000480923 MED1Q15648 1581 aaPredicted RBP29.27■■■□□ 2.28
VPS36-204ENST00000480923 PHLPP1O60346 1717 aa29.26■■■□□ 2.27
VPS36-204ENST00000480923 KNDC1Q76NI1 1749 aa29.24■■■□□ 2.27
VPS36-204ENST00000480923 PLEKHH1Q9ULM0 1364 aa29.24■■■□□ 2.27
VPS36-204ENST00000480923 C1orf167Q5SNV9 1468 aa29.22■■■□□ 2.27
VPS36-204ENST00000480923 AHDC1Q5TGY3 1603 aaPredicted RBP29.21■■■□□ 2.27
VPS36-204ENST00000480923 SIRT1Q96EB6 747 aa29.21■■■□□ 2.27
VPS36-204ENST00000480923 JCADQ9P266 1359 aa29.18■■■□□ 2.26
VPS36-204ENST00000480923 PHF23Q9BUL5 403 aaPredicted RBP29.18■■■□□ 2.26
VPS36-204ENST00000480923 COL16A1Q07092 1604 aaPredicted RBP29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms