RNA–Protein interactions for RNA: ENST00000479602.5

DDX56-211, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 440 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-211ENST00000479602 STAG3Q9UJ98 1225 aa13.48□□□□□ -0.25
DDX56-211ENST00000479602 MED1Q15648 1581 aaPredicted RBP13.48□□□□□ -0.25
DDX56-211ENST00000479602 TBX22Q9Y458 520 aa13.47□□□□□ -0.25
DDX56-211ENST00000479602 XIRP1Q702N8 1843 aaKnown RBP13.46□□□□□ -0.26
DDX56-211ENST00000479602 HRCP23327 699 aa13.45□□□□□ -0.26
DDX56-211ENST00000479602 PLEKHG1Q9ULL1 1385 aa13.45□□□□□ -0.26
DDX56-211ENST00000479602 PROSER2Q86WR7 435 aaPredicted RBP13.44□□□□□ -0.26
DDX56-211ENST00000479602 ADGRB3O60242 1522 aa13.44□□□□□ -0.26
DDX56-211ENST00000479602 HDGFP51858 240 aaKnown RBP13.43□□□□□ -0.26
DDX56-211ENST00000479602 PPARGC1BQ86YN6 1023 aaKnown RBP13.43□□□□□ -0.26
DDX56-211ENST00000479602 IQGAP3Q86VI3 1631 aa13.42□□□□□ -0.26
DDX56-211ENST00000479602 RBM33Q96EV2 1170 aaKnown RBP13.42□□□□□ -0.26
DDX56-211ENST00000479602 ADAMTS13Q76LX8 1427 aa13.41□□□□□ -0.26
DDX56-211ENST00000479602 RIMS2Q9UQ26 1411 aa13.41□□□□□ -0.26
DDX56-211ENST00000479602 NCOA3Q9Y6Q9 1424 aa13.41□□□□□ -0.26
DDX56-211ENST00000479602 SLAIN2Q9P270 581 aa13.41□□□□□ -0.26
DDX56-211ENST00000479602 NKTRP30414 1462 aaKnown RBP13.41□□□□□ -0.26
DDX56-211ENST00000479602 NWD1Q149M9 1564 aa13.41□□□□□ -0.26
DDX56-211ENST00000479602 TMEM131LA2VDJ0 1609 aa13.4□□□□□ -0.26
DDX56-211ENST00000479602 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.4□□□□□ -0.26
DDX56-211ENST00000479602 PIK3R4Q99570 1358 aa13.38□□□□□ -0.27
DDX56-211ENST00000479602 TRIM26Q12899 539 aaPredicted RBP13.38□□□□□ -0.27
DDX56-211ENST00000479602 NUP155O75694 1391 aa13.37□□□□□ -0.27
DDX56-211ENST00000479602 SETD5Q9C0A6 1442 aa13.37□□□□□ -0.27
DDX56-211ENST00000479602 PHF23Q9BUL5 403 aaPredicted RBP13.36□□□□□ -0.27
DDX56-211ENST00000479602 POTEAQ6S8J7 498 aa13.35□□□□□ -0.27
DDX56-211ENST00000479602 SENP3Q9H4L4 574 aaPredicted RBP13.35□□□□□ -0.27
DDX56-211ENST00000479602 C19orf44Q9H6X5 657 aa13.35□□□□□ -0.27
DDX56-211ENST00000479602 MSH6P52701 1360 aa13.34□□□□□ -0.27
DDX56-211ENST00000479602 CHD2O14647 1828 aaKnown RBP13.34□□□□□ -0.27
DDX56-211ENST00000479602 PTPRUQ92729 1446 aa13.33□□□□□ -0.28
DDX56-211ENST00000479602 NUTM2DQ5VT03 806 aaPredicted RBP13.33□□□□□ -0.28
DDX56-211ENST00000479602 BCANQ96GW7 911 aa13.33□□□□□ -0.28
DDX56-211ENST00000479602 E9PCH4 1651 aa13.33□□□□□ -0.28
DDX56-211ENST00000479602 PPP1R15AO75807 674 aaPredicted RBP13.32□□□□□ -0.28
DDX56-211ENST00000479602 AMOTL2Q9Y2J4 779 aa13.32□□□□□ -0.28
DDX56-211ENST00000479602 ROBO1Q9Y6N7 1651 aa13.31□□□□□ -0.28
DDX56-211ENST00000479602 CHGAP10645 457 aaKnown RBP13.3□□□□□ -0.28
DDX56-211ENST00000479602 CADPS2Q86UW7 1296 aa13.3□□□□□ -0.28
DDX56-211ENST00000479602 RAB3GAP2Q9H2M9 1393 aa13.3□□□□□ -0.28
DDX56-211ENST00000479602 MYO5BQ9ULV0 1848 aa13.29□□□□□ -0.28
DDX56-211ENST00000479602 JCADQ9P266 1359 aa13.29□□□□□ -0.28
DDX56-211ENST00000479602 ITGAEP38570 1179 aa13.28□□□□□ -0.28
DDX56-211ENST00000479602 DIP2AQ14689 1571 aa13.28□□□□□ -0.28
DDX56-211ENST00000479602 METP08581 1390 aa13.27□□□□□ -0.29
DDX56-211ENST00000479602 BRINP3Q76B58 766 aa13.26□□□□□ -0.29
DDX56-211ENST00000479602 NRXN3Q9Y4C0 1643 aa13.24□□□□□ -0.29
DDX56-211ENST00000479602 SETBP1Q9Y6X0 1596 aa13.24□□□□□ -0.29
DDX56-211ENST00000479602 TRPM2O94759 1503 aa13.24□□□□□ -0.29
DDX56-211ENST00000479602 DCCP43146 1447 aa13.24□□□□□ -0.29
DDX56-211ENST00000479602 SPATA31A6Q5VVP1 1343 aa13.24□□□□□ -0.29
DDX56-211ENST00000479602 ATF3P18847 181 aa13.24□□□□□ -0.29
DDX56-211ENST00000479602 COL16A1Q07092 1604 aaPredicted RBP13.24□□□□□ -0.29
DDX56-211ENST00000479602 SPHKAPQ2M3C7 1700 aa13.23□□□□□ -0.29
DDX56-211ENST00000479602 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.22□□□□□ -0.29
DDX56-211ENST00000479602 AHDC1Q5TGY3 1603 aaPredicted RBP13.22□□□□□ -0.29
DDX56-211ENST00000479602 MST1RQ04912 1400 aa13.21□□□□□ -0.3
DDX56-211ENST00000479602 LRP6O75581 1613 aa13.21□□□□□ -0.3
DDX56-211ENST00000479602 C14orf37Q86TY3 774 aa13.2□□□□□ -0.3
DDX56-211ENST00000479602 PRAG1Q86YV5 1406 aa13.2□□□□□ -0.3
DDX56-211ENST00000479602 XRN1Q8IZH2 1706 aaKnown RBP13.19□□□□□ -0.3
DDX56-211ENST00000479602 NEXMIFQ5QGS0 1516 aa13.19□□□□□ -0.3
DDX56-211ENST00000479602 RPGRIP1LQ68CZ1 1315 aa13.19□□□□□ -0.3
DDX56-211ENST00000479602 ZNF326Q5BKZ1 582 aaKnown RBP13.19□□□□□ -0.3
DDX56-211ENST00000479602 PHLPP1O60346 1717 aa13.19□□□□□ -0.3
DDX56-211ENST00000479602 VGFO15240 615 aaPredicted RBP13.18□□□□□ -0.3
DDX56-211ENST00000479602 ZNF772Q68DY9 489 aaPredicted RBP13.17□□□□□ -0.3
DDX56-211ENST00000479602 ADGRL3Q9HAR2 1447 aa13.16□□□□□ -0.3
DDX56-211ENST00000479602 LRRC59Q96AG4 307 aaKnown RBP13.16□□□□□ -0.3
DDX56-211ENST00000479602 CLTCL1P53675 1640 aa13.16□□□□□ -0.3
DDX56-211ENST00000479602 ROBO2Q9HCK4 1378 aa13.15□□□□□ -0.3
DDX56-211ENST00000479602 CLSPNQ9HAW4 1339 aa13.14□□□□□ -0.31
DDX56-211ENST00000479602 ASXL1Q8IXJ9 1541 aa13.14□□□□□ -0.31
DDX56-211ENST00000479602 MPHOSPH9Q99550 1183 aa13.14□□□□□ -0.31
DDX56-211ENST00000479602 SOS2Q07890 1332 aaPredicted RBP13.13□□□□□ -0.31
DDX56-211ENST00000479602 PTCH1Q13635 1447 aa13.13□□□□□ -0.31
DDX56-211ENST00000479602 ANKRD30BQ9BXX2 1392 aa13.13□□□□□ -0.31
DDX56-211ENST00000479602 DDX17Q92841 729 aaKnown RBP13.13□□□□□ -0.31
DDX56-211ENST00000479602 SLC4A1APQ9BWU0 796 aaKnown RBP13.13□□□□□ -0.31
DDX56-211ENST00000479602 SHPRHQ149N8 1683 aa13.12□□□□□ -0.31
DDX56-211ENST00000479602 C1orf167Q5SNV9 1468 aa13.12□□□□□ -0.31
DDX56-211ENST00000479602 DHX57Q6P158 1386 aaKnown RBP13.11□□□□□ -0.31
DDX56-211ENST00000479602 PNPLA6Q8IY17 1366 aa13.11□□□□□ -0.31
DDX56-211ENST00000479602 UPF1Q92900 1129 aaKnown RBP eCLIP13.11□□□□□ -0.31
DDX56-211ENST00000479602 TRIM52Q96A61 297 aa13.11□□□□□ -0.31
DDX56-211ENST00000479602 ORAI2Q96SN7 254 aa13.11□□□□□ -0.31
DDX56-211ENST00000479602 RXRBP28702 533 aa13.1□□□□□ -0.31
DDX56-211ENST00000479602 SPATA31E1Q6ZUB1 1445 aa13.1□□□□□ -0.31
DDX56-211ENST00000479602 CCDC144AA2RUR9 1427 aa13.09□□□□□ -0.31
DDX56-211ENST00000479602 FOXD1Q16676 465 aa13.09□□□□□ -0.31
DDX56-211ENST00000479602 LAMC1P11047 1609 aa13.09□□□□□ -0.31
DDX56-211ENST00000479602 CDK12Q9NYV4 1490 aaPredicted RBP13.09□□□□□ -0.31
DDX56-211ENST00000479602 ADGRF5Q8IZF2 1346 aa13.09□□□□□ -0.31
DDX56-211ENST00000479602 KIF1BO60333 1816 aa13.09□□□□□ -0.31
DDX56-211ENST00000479602 SETD1AO15047 1707 aaKnown RBP13.08□□□□□ -0.32
DDX56-211ENST00000479602 NHSL1Q5SYE7 1610 aa13.08□□□□□ -0.32
DDX56-211ENST00000479602 AFF2P51816 1311 aa13.08□□□□□ -0.32
DDX56-211ENST00000479602 SRCAPQ6ZRS2 3230 aa13.07□□□□□ -0.32
DDX56-211ENST00000479602 NUTM2BA6NNL0 878 aaPredicted RBP13.07□□□□□ -0.32
DDX56-211ENST00000479602 NUTM2EB1AL46 878 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms