RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 SENP3Q9H4L4 574 aaPredicted RBP34.01■■■■□ 3.03
TRAF4-211ENST00000478021 SETD5Q9C0A6 1442 aa34■■■■□ 3.03
TRAF4-211ENST00000478021 PPP1R15AO75807 674 aaPredicted RBP33.96■■■■□ 3.03
TRAF4-211ENST00000478021 NUTM2DQ5VT03 806 aaPredicted RBP33.96■■■■□ 3.03
TRAF4-211ENST00000478021 BCANQ96GW7 911 aa33.95■■■■□ 3.03
TRAF4-211ENST00000478021 SLC26A8Q96RN1 970 aa33.94■■■■□ 3.02
TRAF4-211ENST00000478021 FOXD1Q16676 465 aa33.93■■■■□ 3.02
TRAF4-211ENST00000478021 HDGFP51858 240 aaKnown RBP33.92■■■■□ 3.02
TRAF4-211ENST00000478021 KIF1BO60333 1816 aa33.91■■■■□ 3.02
TRAF4-211ENST00000478021 PLEKHG1Q9ULL1 1385 aa33.9■■■■□ 3.02
TRAF4-211ENST00000478021 RAB3GAP2Q9H2M9 1393 aa33.89■■■■□ 3.02
TRAF4-211ENST00000478021 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.89■■■■□ 3.02
TRAF4-211ENST00000478021 MPHOSPH9Q99550 1183 aa33.88■■■■□ 3.01
TRAF4-211ENST00000478021 ZNF326Q5BKZ1 582 aaKnown RBP33.87■■■■□ 3.01
TRAF4-211ENST00000478021 LRRC7Q96NW7 1537 aa33.86■■■■□ 3.01
TRAF4-211ENST00000478021 UBAP1LF5GYI3 381 aa33.84■■■■□ 3.01
TRAF4-211ENST00000478021 NEXMIFQ5QGS0 1516 aa33.78■■■■□ 3
TRAF4-211ENST00000478021 XIRP1Q702N8 1843 aaKnown RBP33.77■■■■□ 3
TRAF4-211ENST00000478021 ADAMTS13Q76LX8 1427 aa33.77■■■■□ 3
TRAF4-211ENST00000478021 ACIN1Q9UKV3 1341 aaKnown RBP33.77■■■■□ 3
TRAF4-211ENST00000478021 KCNA6P17658 529 aa33.76■■■□□ 2.99
TRAF4-211ENST00000478021 NWD1Q149M9 1564 aa33.76■■■□□ 2.99
TRAF4-211ENST00000478021 CHD2O14647 1828 aaKnown RBP33.74■■■□□ 2.99
TRAF4-211ENST00000478021 DIP2AQ14689 1571 aa33.73■■■□□ 2.99
TRAF4-211ENST00000478021 NRXN3Q9Y4C0 1643 aa33.72■■■□□ 2.99
TRAF4-211ENST00000478021 CCDC144AA2RUR9 1427 aa33.72■■■□□ 2.99
TRAF4-211ENST00000478021 TBX22Q9Y458 520 aa33.72■■■□□ 2.99
TRAF4-211ENST00000478021 SETBP1Q9Y6X0 1596 aa33.68■■■□□ 2.98
TRAF4-211ENST00000478021 TOM1O60784 492 aa33.68■■■□□ 2.98
TRAF4-211ENST00000478021 ALKQ9UM73 1620 aa33.68■■■□□ 2.98
TRAF4-211ENST00000478021 PIP4K2BP78356 416 aa33.67■■■□□ 2.98
TRAF4-211ENST00000478021 SCAF1Q9H7N4 1312 aaKnown RBP33.67■■■□□ 2.98
TRAF4-211ENST00000478021 NKTRP30414 1462 aaKnown RBP33.67■■■□□ 2.98
TRAF4-211ENST00000478021 TMEM94Q12767 1356 aa33.66■■■□□ 2.98
TRAF4-211ENST00000478021 PROSER2Q86WR7 435 aaPredicted RBP33.66■■■□□ 2.98
TRAF4-211ENST00000478021 RBM33Q96EV2 1170 aaKnown RBP33.66■■■□□ 2.98
TRAF4-211ENST00000478021 PPLO60437 1756 aa33.65■■■□□ 2.98
TRAF4-211ENST00000478021 RPGRIP1LQ68CZ1 1315 aa33.59■■■□□ 2.97
TRAF4-211ENST00000478021 PIK3R4Q99570 1358 aa33.59■■■□□ 2.97
TRAF4-211ENST00000478021 HRCP23327 699 aa33.58■■■□□ 2.97
TRAF4-211ENST00000478021 RGL3Q3MIN7 710 aa33.58■■■□□ 2.97
TRAF4-211ENST00000478021 SPATA31E1Q6ZUB1 1445 aa33.58■■■□□ 2.97
TRAF4-211ENST00000478021 PTPRUQ92729 1446 aa33.58■■■□□ 2.97
TRAF4-211ENST00000478021 VGFO15240 615 aaPredicted RBP33.56■■■□□ 2.96
TRAF4-211ENST00000478021 IFT172Q9UG01 1749 aa33.54■■■□□ 2.96
TRAF4-211ENST00000478021 METP08581 1390 aa33.54■■■□□ 2.96
TRAF4-211ENST00000478021 AMOTL2Q9Y2J4 779 aa33.53■■■□□ 2.96
TRAF4-211ENST00000478021 XRN1Q8IZH2 1706 aaKnown RBP33.52■■■□□ 2.96
TRAF4-211ENST00000478021 SETD1AO15047 1707 aaKnown RBP33.51■■■□□ 2.96
TRAF4-211ENST00000478021 ANKRD30BQ9BXX2 1392 aa33.47■■■□□ 2.95
TRAF4-211ENST00000478021 MSH6P52701 1360 aa33.47■■■□□ 2.95
TRAF4-211ENST00000478021 ADGRF5Q8IZF2 1346 aa33.46■■■□□ 2.95
TRAF4-211ENST00000478021 HSPA1LP34931 641 aa33.45■■■□□ 2.95
TRAF4-211ENST00000478021 C14orf37Q86TY3 774 aa33.43■■■□□ 2.94
TRAF4-211ENST00000478021 NCOA3Q9Y6Q9 1424 aa33.39■■■□□ 2.94
TRAF4-211ENST00000478021 DISP3Q9P2K9 1392 aa33.39■■■□□ 2.94
TRAF4-211ENST00000478021 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.38■■■□□ 2.93
TRAF4-211ENST00000478021 ROBO1Q9Y6N7 1651 aa33.34■■■□□ 2.93
TRAF4-211ENST00000478021 ILDR2Q71H61 639 aa33.34■■■□□ 2.93
TRAF4-211ENST00000478021 PIK3C2GO75747 1445 aa33.33■■■□□ 2.93
TRAF4-211ENST00000478021 C19orf44Q9H6X5 657 aa33.31■■■□□ 2.92
TRAF4-211ENST00000478021 FAM135BQ49AJ0 1406 aa33.3■■■□□ 2.92
TRAF4-211ENST00000478021 MYOM2P54296 1465 aa33.3■■■□□ 2.92
TRAF4-211ENST00000478021 SLAIN2Q9P270 581 aa33.29■■■□□ 2.92
TRAF4-211ENST00000478021 NALCNQ8IZF0 1738 aa33.28■■■□□ 2.92
TRAF4-211ENST00000478021 ASXL1Q8IXJ9 1541 aa33.28■■■□□ 2.92
TRAF4-211ENST00000478021 ROBO2Q9HCK4 1378 aa33.27■■■□□ 2.92
TRAF4-211ENST00000478021 PTCH1Q13635 1447 aa33.27■■■□□ 2.92
TRAF4-211ENST00000478021 NRXN1Q9ULB1 1477 aa33.26■■■□□ 2.92
TRAF4-211ENST00000478021 ATF3P18847 181 aa33.26■■■□□ 2.91
TRAF4-211ENST00000478021 CADPS2Q86UW7 1296 aa33.24■■■□□ 2.91
TRAF4-211ENST00000478021 ADGRL3Q9HAR2 1447 aa33.23■■■□□ 2.91
TRAF4-211ENST00000478021 TMEM132EQ6IEE7 984 aa33.23■■■□□ 2.91
TRAF4-211ENST00000478021 PRAG1Q86YV5 1406 aa33.22■■■□□ 2.91
TRAF4-211ENST00000478021 STK26Q9P289 416 aa33.21■■■□□ 2.91
TRAF4-211ENST00000478021 LAMC1P11047 1609 aa33.2■■■□□ 2.91
TRAF4-211ENST00000478021 DCCP43146 1447 aa33.2■■■□□ 2.91
TRAF4-211ENST00000478021 TRIM26Q12899 539 aaPredicted RBP33.2■■■□□ 2.91
TRAF4-211ENST00000478021 KDM2AQ9Y2K7 1162 aa33.2■■■□□ 2.91
TRAF4-211ENST00000478021 CFAP70Q5T0N1 1121 aa33.19■■■□□ 2.9
TRAF4-211ENST00000478021 DCAF11Q8TEB1 546 aa33.19■■■□□ 2.9
TRAF4-211ENST00000478021 KNDC1Q76NI1 1749 aa33.17■■■□□ 2.9
TRAF4-211ENST00000478021 C14orf93Q9H972 538 aaKnown RBP33.17■■■□□ 2.9
TRAF4-211ENST00000478021 LRPPRCP42704 1394 aaKnown RBP33.17■■■□□ 2.9
TRAF4-211ENST00000478021 DHX57Q6P158 1386 aaKnown RBP33.16■■■□□ 2.9
TRAF4-211ENST00000478021 PHLPP1O60346 1717 aa33.15■■■□□ 2.9
TRAF4-211ENST00000478021 MST1RQ04912 1400 aa33.13■■■□□ 2.89
TRAF4-211ENST00000478021 YTHDC2Q9H6S0 1430 aaKnown RBP33.13■■■□□ 2.89
TRAF4-211ENST00000478021 TECPR2O15040 1411 aa33.12■■■□□ 2.89
TRAF4-211ENST00000478021 ABCC11Q96J66 1382 aa33.1■■■□□ 2.89
TRAF4-211ENST00000478021 MED1Q15648 1581 aaPredicted RBP33.09■■■□□ 2.89
TRAF4-211ENST00000478021 WAPLQ7Z5K2 1190 aa33.09■■■□□ 2.89
TRAF4-211ENST00000478021 PLEKHH1Q9ULM0 1364 aa33.07■■■□□ 2.88
TRAF4-211ENST00000478021 BRINP3Q76B58 766 aa33.06■■■□□ 2.88
TRAF4-211ENST00000478021 ADGRB1O14514 1584 aa33.04■■■□□ 2.88
TRAF4-211ENST00000478021 COL16A1Q07092 1604 aaPredicted RBP33.03■■■□□ 2.88
TRAF4-211ENST00000478021 STAC3Q96MF2 364 aa33.03■■■□□ 2.88
TRAF4-211ENST00000478021 AHDC1Q5TGY3 1603 aaPredicted RBP33.02■■■□□ 2.88
TRAF4-211ENST00000478021 CDC42BPGQ6DT37 1551 aa33.01■■■□□ 2.88
TRAF4-211ENST00000478021 SIN3AQ96ST3 1273 aa33.01■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms