RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 TOP2BQ02880 1626 aa12.48□□□□□ -0.41
VPS50-211ENST00000474412 PRSS12P56730 875 aa12.47□□□□□ -0.41
VPS50-211ENST00000474412 KIAA1468Q9P260 1216 aa12.47□□□□□ -0.41
VPS50-211ENST00000474412 ONECUT3O60422 494 aaPredicted RBP12.46□□□□□ -0.41
VPS50-211ENST00000474412 MRPL50Q8N5N7 158 aaKnown RBP12.46□□□□□ -0.41
VPS50-211ENST00000474412 SNAPC4Q5SXM2 1469 aa12.46□□□□□ -0.42
VPS50-211ENST00000474412 SOGA1O94964 1423 aa12.45□□□□□ -0.42
VPS50-211ENST00000474412 GOLGA8CPA6NN73 597 aa12.44□□□□□ -0.42
VPS50-211ENST00000474412 PACS2Q86VP3 889 aa12.44□□□□□ -0.42
VPS50-211ENST00000474412 NPDC1Q9NQX5 325 aaPredicted RBP12.44□□□□□ -0.42
VPS50-211ENST00000474412 TSKSQ9UJT2 592 aa12.44□□□□□ -0.42
VPS50-211ENST00000474412 BHMG1C9JSJ3 638 aaPredicted RBP12.43□□□□□ -0.42
VPS50-211ENST00000474412 TDRD9Q8NDG6 1382 aaKnown RBP12.43□□□□□ -0.42
VPS50-211ENST00000474412 FCHSD2O94868 740 aa12.42□□□□□ -0.42
VPS50-211ENST00000474412 PTGDRQ13258 359 aa12.42□□□□□ -0.42
VPS50-211ENST00000474412 PADI6Q6TGC4 694 aa12.42□□□□□ -0.42
VPS50-211ENST00000474412 RBM27Q9P2N5 1060 aaKnown RBP12.42□□□□□ -0.42
VPS50-211ENST00000474412 ARHGEF11O15085 1522 aa12.42□□□□□ -0.42
VPS50-211ENST00000474412 GPIHBP1Q8IV16 184 aa12.41□□□□□ -0.42
VPS50-211ENST00000474412 ABCA10Q8WWZ4 1543 aa12.41□□□□□ -0.42
VPS50-211ENST00000474412 ADAMTS12P58397 1594 aa12.4□□□□□ -0.42
VPS50-211ENST00000474412 SEPT9Q9UHD8 586 aaPredicted RBP12.4□□□□□ -0.42
VPS50-211ENST00000474412 CLASP1Q7Z460 1538 aa12.4□□□□□ -0.42
VPS50-211ENST00000474412 NBPF26B4DH59 902 aa12.39□□□□□ -0.43
VPS50-211ENST00000474412 FAM198AQ9UFP1 575 aa12.39□□□□□ -0.43
VPS50-211ENST00000474412 WRNQ14191 1432 aaPredicted RBP eCLIP12.38□□□□□ -0.43
VPS50-211ENST00000474412 KCTD12Q96CX2 325 aaKnown RBP12.38□□□□□ -0.43
VPS50-211ENST00000474412 MAGI1Q96QZ7 1491 aaPredicted RBP12.38□□□□□ -0.43
VPS50-211ENST00000474412 LAPTM4BQ86VI4 370 aa12.37□□□□□ -0.43
VPS50-211ENST00000474412 PNMA3Q9UL41 463 aa12.37□□□□□ -0.43
VPS50-211ENST00000474412 GRIN2BQ13224 1484 aa12.37□□□□□ -0.43
VPS50-211ENST00000474412 GAPVD1Q14C86 1478 aa12.36□□□□□ -0.43
VPS50-211ENST00000474412 SMAPO00193 183 aa12.35□□□□□ -0.43
VPS50-211ENST00000474412 HIC1Q14526 733 aa12.35□□□□□ -0.43
VPS50-211ENST00000474412 TATDN2Q93075 761 aa12.35□□□□□ -0.43
VPS50-211ENST00000474412 WNT2BQ93097 391 aa12.35□□□□□ -0.43
VPS50-211ENST00000474412 FAM98CQ17RN3 349 aaKnown RBP12.34□□□□□ -0.43
VPS50-211ENST00000474412 NUDT18Q6ZVK8 323 aa12.34□□□□□ -0.43
VPS50-211ENST00000474412 TTC13Q8NBP0 860 aa12.34□□□□□ -0.43
VPS50-211ENST00000474412 SYNJ2O15056 1496 aa12.33□□□□□ -0.44
VPS50-211ENST00000474412 GNPATO15228 680 aa12.32□□□□□ -0.44
VPS50-211ENST00000474412 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.32□□□□□ -0.44
VPS50-211ENST00000474412 ANKK1Q8NFD2 765 aa12.32□□□□□ -0.44
VPS50-211ENST00000474412 ARAP1Q96P48 1450 aa12.32□□□□□ -0.44
VPS50-211ENST00000474412 CEP170Q5SW79 1584 aa12.31□□□□□ -0.44
VPS50-211ENST00000474412 LMOD2Q6P5Q4 547 aa12.31□□□□□ -0.44
VPS50-211ENST00000474412 ZFRQ96KR1 1074 aaKnown RBP12.31□□□□□ -0.44
VPS50-211ENST00000474412 C3orf80F5H4A9 247 aa12.3□□□□□ -0.44
VPS50-211ENST00000474412 GPR37O15354 613 aa12.3□□□□□ -0.44
VPS50-211ENST00000474412 THSD4Q6ZMP0 1018 aa12.28□□□□□ -0.44
VPS50-211ENST00000474412 BCANQ96GW7 911 aa12.28□□□□□ -0.44
VPS50-211ENST00000474412 ERCC6L2Q5T890 1561 aa12.27□□□□□ -0.44
VPS50-211ENST00000474412 GRIN2AQ12879 1464 aa12.27□□□□□ -0.45
VPS50-211ENST00000474412 FAM161AQ3B820 660 aa12.26□□□□□ -0.45
VPS50-211ENST00000474412 RBM46Q8TBY0 533 aaKnown RBP12.26□□□□□ -0.45
VPS50-211ENST00000474412 HCSTQ9UBK5 93 aa12.26□□□□□ -0.45
VPS50-211ENST00000474412 ADGRG1Q9Y653 693 aa12.26□□□□□ -0.45
VPS50-211ENST00000474412 ERICH3Q5RHP9 1530 aa12.26□□□□□ -0.45
VPS50-211ENST00000474412 BCAMP50895 628 aa12.25□□□□□ -0.45
VPS50-211ENST00000474412 PTPN5P54829 565 aa12.25□□□□□ -0.45
VPS50-211ENST00000474412 LRCH3Q96II8 777 aa12.25□□□□□ -0.45
VPS50-211ENST00000474412 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.25□□□□□ -0.45
VPS50-211ENST00000474412 SHROOM2Q13796 1616 aa12.25□□□□□ -0.45
VPS50-211ENST00000474412 FECHP22830 423 aa12.24□□□□□ -0.45
VPS50-211ENST00000474412 RUSC2Q8N2Y8 1516 aa12.24□□□□□ -0.45
VPS50-211ENST00000474412 HDGFP51858 240 aaKnown RBP12.23□□□□□ -0.45
VPS50-211ENST00000474412 SAMD7Q7Z3H4 446 aa12.23□□□□□ -0.45
VPS50-211ENST00000474412 EYA1Q99502 592 aa12.23□□□□□ -0.45
VPS50-211ENST00000474412 SOWAHBA6NEL2 793 aa12.22□□□□□ -0.45
VPS50-211ENST00000474412 CUL7Q14999 1698 aa12.22□□□□□ -0.45
VPS50-211ENST00000474412 OATP04181 439 aa12.21□□□□□ -0.45
VPS50-211ENST00000474412 RNF40O75150 1001 aa12.2□□□□□ -0.46
VPS50-211ENST00000474412 NUP160Q12769 1436 aa12.2□□□□□ -0.46
VPS50-211ENST00000474412 DNAJB2P25686 324 aa12.19□□□□□ -0.46
VPS50-211ENST00000474412 SWT1Q5T5J6 900 aaKnown RBP12.18□□□□□ -0.46
VPS50-211ENST00000474412 CHMP7Q8WUX9 453 aaPredicted RBP12.18□□□□□ -0.46
VPS50-211ENST00000474412 HPS5Q9UPZ3 1129 aa12.18□□□□□ -0.46
VPS50-211ENST00000474412 FHAD1B1AJZ9 1412 aa12.18□□□□□ -0.46
VPS50-211ENST00000474412 RCCD1A6NED2 376 aa12.17□□□□□ -0.46
VPS50-211ENST00000474412 SLC4A3P48751 1232 aa12.17□□□□□ -0.46
VPS50-211ENST00000474412 MAP2K5Q13163 448 aa12.16□□□□□ -0.46
VPS50-211ENST00000474412 METTL3Q86U44 580 aaKnown RBP12.16□□□□□ -0.46
VPS50-211ENST00000474412 PXYLP1Q8TE99 480 aa12.16□□□□□ -0.46
VPS50-211ENST00000474412 TSR3Q9UJK0 312 aaKnown RBP12.16□□□□□ -0.46
VPS50-211ENST00000474412 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.15□□□□□ -0.46
VPS50-211ENST00000474412 PPP4CP60510 307 aa12.14□□□□□ -0.47
VPS50-211ENST00000474412 ZC3H15Q8WU90 426 aaKnown RBP12.14□□□□□ -0.47
VPS50-211ENST00000474412 WBP1LQ9NX94 342 aa12.14□□□□□ -0.47
VPS50-211ENST00000474412 SLF2Q8IX21 1173 aa12.13□□□□□ -0.47
VPS50-211ENST00000474412 TMEM134Q9H6X4 195 aa12.13□□□□□ -0.47
VPS50-211ENST00000474412 CYB5RLQ6IPT4 315 aa12.12□□□□□ -0.47
VPS50-211ENST00000474412 KRI1Q8N9T8 703 aaKnown RBP12.12□□□□□ -0.47
VPS50-211ENST00000474412 MINK1Q8N4C8 1332 aaPredicted RBP12.11□□□□□ -0.47
VPS50-211ENST00000474412 NYAP1Q6ZVC0 841 aa12.1□□□□□ -0.47
VPS50-211ENST00000474412 CTTNBP2Q8WZ74 1663 aa12.1□□□□□ -0.47
VPS50-211ENST00000474412 IRF6O14896 467 aa12.09□□□□□ -0.47
VPS50-211ENST00000474412 NECTIN2Q92692 538 aa12.09□□□□□ -0.47
VPS50-211ENST00000474412 CCDC102AQ96A19 550 aa12.09□□□□□ -0.47
VPS50-211ENST00000474412 KIF13AQ9H1H9 1805 aa12.09□□□□□ -0.47
VPS50-211ENST00000474412 ZMYND10O75800 440 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms