RNA–Protein interactions for RNA: ENST00000474144.5

TMEM54-204, Transcript of transmembrane protein 54, humanhuman

TSL 3

Gene TMEM54, Length 748 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM54-204ENST00000474144 SCAF1Q9H7N4 1312 aaKnown RBP30.11■■■□□ 2.41
TMEM54-204ENST00000474144 RIMS2Q9UQ26 1411 aa30.11■■■□□ 2.41
TMEM54-204ENST00000474144 HFM1A2PYH4 1435 aa30.07■■■□□ 2.4
TMEM54-204ENST00000474144 BCANQ96GW7 911 aa30.07■■■□□ 2.4
TMEM54-204ENST00000474144 SPHKAPQ2M3C7 1700 aa30.07■■■□□ 2.4
TMEM54-204ENST00000474144 XIRP1Q702N8 1843 aaKnown RBP30.06■■■□□ 2.4
TMEM54-204ENST00000474144 NUTM2DQ5VT03 806 aaPredicted RBP30.06■■■□□ 2.4
TMEM54-204ENST00000474144 PLEKHG1Q9ULL1 1385 aa30.04■■■□□ 2.4
TMEM54-204ENST00000474144 PPP1R15AO75807 674 aaPredicted RBP30.04■■■□□ 2.4
TMEM54-204ENST00000474144 KCNA6P17658 529 aa30.03■■■□□ 2.4
TMEM54-204ENST00000474144 HDGFP51858 240 aaKnown RBP30.02■■■□□ 2.4
TMEM54-204ENST00000474144 TRIM52Q96A61 297 aa30.01■■■□□ 2.39
TMEM54-204ENST00000474144 HSPA1LP34931 641 aa29.99■■■□□ 2.39
TMEM54-204ENST00000474144 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.98■■■□□ 2.39
TMEM54-204ENST00000474144 RBM33Q96EV2 1170 aaKnown RBP29.98■■■□□ 2.39
TMEM54-204ENST00000474144 NWD1Q149M9 1564 aa29.96■■■□□ 2.39
TMEM54-204ENST00000474144 TMEM94Q12767 1356 aa29.95■■■□□ 2.39
TMEM54-204ENST00000474144 CLTCL1P53675 1640 aa29.95■■■□□ 2.38
TMEM54-204ENST00000474144 DISP3Q9P2K9 1392 aa29.93■■■□□ 2.38
TMEM54-204ENST00000474144 PROSER2Q86WR7 435 aaPredicted RBP29.93■■■□□ 2.38
TMEM54-204ENST00000474144 TRPM2O94759 1503 aa29.92■■■□□ 2.38
TMEM54-204ENST00000474144 ADAMTS13Q76LX8 1427 aa29.92■■■□□ 2.38
TMEM54-204ENST00000474144 CHD2O14647 1828 aaKnown RBP29.92■■■□□ 2.38
TMEM54-204ENST00000474144 TBX22Q9Y458 520 aa29.91■■■□□ 2.38
TMEM54-204ENST00000474144 NKTRP30414 1462 aaKnown RBP29.89■■■□□ 2.38
TMEM54-204ENST00000474144 SLC4A1APQ9BWU0 796 aaKnown RBP29.89■■■□□ 2.38
TMEM54-204ENST00000474144 ZNF326Q5BKZ1 582 aaKnown RBP29.88■■■□□ 2.37
TMEM54-204ENST00000474144 DIP2AQ14689 1571 aa29.84■■■□□ 2.37
TMEM54-204ENST00000474144 KIF1BO60333 1816 aa29.83■■■□□ 2.37
TMEM54-204ENST00000474144 NRXN3Q9Y4C0 1643 aa29.82■■■□□ 2.36
TMEM54-204ENST00000474144 FOXD1Q16676 465 aa29.82■■■□□ 2.36
TMEM54-204ENST00000474144 NEXMIFQ5QGS0 1516 aa29.81■■■□□ 2.36
TMEM54-204ENST00000474144 PTPRUQ92729 1446 aa29.78■■■□□ 2.36
TMEM54-204ENST00000474144 SETBP1Q9Y6X0 1596 aa29.77■■■□□ 2.36
TMEM54-204ENST00000474144 ILDR2Q71H61 639 aa29.77■■■□□ 2.36
TMEM54-204ENST00000474144 PIK3R4Q99570 1358 aa29.77■■■□□ 2.36
TMEM54-204ENST00000474144 MSH6P52701 1360 aa29.75■■■□□ 2.35
TMEM54-204ENST00000474144 MPHOSPH9Q99550 1183 aa29.74■■■□□ 2.35
TMEM54-204ENST00000474144 AMOTL2Q9Y2J4 779 aa29.74■■■□□ 2.35
TMEM54-204ENST00000474144 FAM135BQ49AJ0 1406 aa29.72■■■□□ 2.35
TMEM54-204ENST00000474144 ROBO1Q9Y6N7 1651 aa29.7■■■□□ 2.35
TMEM54-204ENST00000474144 MED1Q15648 1581 aaPredicted RBP29.7■■■□□ 2.35
TMEM54-204ENST00000474144 METP08581 1390 aa29.7■■■□□ 2.35
TMEM54-204ENST00000474144 SETD5Q9C0A6 1442 aa29.69■■■□□ 2.34
TMEM54-204ENST00000474144 C14orf37Q86TY3 774 aa29.67■■■□□ 2.34
TMEM54-204ENST00000474144 NCOA3Q9Y6Q9 1424 aa29.67■■■□□ 2.34
TMEM54-204ENST00000474144 XRN1Q8IZH2 1706 aaKnown RBP29.67■■■□□ 2.34
TMEM54-204ENST00000474144 SLAIN2Q9P270 581 aa29.66■■■□□ 2.34
TMEM54-204ENST00000474144 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.64■■■□□ 2.34
TMEM54-204ENST00000474144 PPLO60437 1756 aa29.63■■■□□ 2.33
TMEM54-204ENST00000474144 VGFO15240 615 aaPredicted RBP29.62■■■□□ 2.33
TMEM54-204ENST00000474144 RPGRIP1LQ68CZ1 1315 aa29.62■■■□□ 2.33
TMEM54-204ENST00000474144 CCDC144AA2RUR9 1427 aa29.62■■■□□ 2.33
TMEM54-204ENST00000474144 RAB3GAP2Q9H2M9 1393 aa29.61■■■□□ 2.33
TMEM54-204ENST00000474144 C19orf44Q9H6X5 657 aa29.6■■■□□ 2.33
TMEM54-204ENST00000474144 SETD1AO15047 1707 aaKnown RBP29.59■■■□□ 2.33
TMEM54-204ENST00000474144 RGL3Q3MIN7 710 aa29.57■■■□□ 2.32
TMEM54-204ENST00000474144 SPATA31E1Q6ZUB1 1445 aa29.55■■■□□ 2.32
TMEM54-204ENST00000474144 ATF3P18847 181 aa29.55■■■□□ 2.32
TMEM54-204ENST00000474144 CADPS2Q86UW7 1296 aa29.54■■■□□ 2.32
TMEM54-204ENST00000474144 ACIN1Q9UKV3 1341 aaKnown RBP29.52■■■□□ 2.32
TMEM54-204ENST00000474144 PHLPP1O60346 1717 aa29.52■■■□□ 2.32
TMEM54-204ENST00000474144 ADGRF5Q8IZF2 1346 aa29.51■■■□□ 2.32
TMEM54-204ENST00000474144 IFT172Q9UG01 1749 aa29.5■■■□□ 2.31
TMEM54-204ENST00000474144 PHF23Q9BUL5 403 aaPredicted RBP29.47■■■□□ 2.31
TMEM54-204ENST00000474144 NALCNQ8IZF0 1738 aa29.47■■■□□ 2.31
TMEM54-204ENST00000474144 DCCP43146 1447 aa29.46■■■□□ 2.31
TMEM54-204ENST00000474144 ROBO2Q9HCK4 1378 aa29.45■■■□□ 2.31
TMEM54-204ENST00000474144 ADGRL3Q9HAR2 1447 aa29.44■■■□□ 2.3
TMEM54-204ENST00000474144 COL16A1Q07092 1604 aaPredicted RBP29.43■■■□□ 2.3
TMEM54-204ENST00000474144 MST1RQ04912 1400 aa29.43■■■□□ 2.3
TMEM54-204ENST00000474144 PTCH1Q13635 1447 aa29.43■■■□□ 2.3
TMEM54-204ENST00000474144 ANKRD30BQ9BXX2 1392 aa29.42■■■□□ 2.3
TMEM54-204ENST00000474144 SOCS7O14512 581 aa29.42■■■□□ 2.3
TMEM54-204ENST00000474144 BRINP3Q76B58 766 aa29.42■■■□□ 2.3
TMEM54-204ENST00000474144 AHDC1Q5TGY3 1603 aaPredicted RBP29.39■■■□□ 2.3
TMEM54-204ENST00000474144 PRAG1Q86YV5 1406 aa29.38■■■□□ 2.29
TMEM54-204ENST00000474144 JCADQ9P266 1359 aa29.37■■■□□ 2.29
TMEM54-204ENST00000474144 PIK3C2GO75747 1445 aa29.37■■■□□ 2.29
TMEM54-204ENST00000474144 ASXL1Q8IXJ9 1541 aa29.36■■■□□ 2.29
TMEM54-204ENST00000474144 RGS17Q9UGC6 210 aaPredicted RBP29.36■■■□□ 2.29
TMEM54-204ENST00000474144 TMEM132EQ6IEE7 984 aa29.34■■■□□ 2.29
TMEM54-204ENST00000474144 HRCP23327 699 aa29.33■■■□□ 2.29
TMEM54-204ENST00000474144 STK26Q9P289 416 aa29.33■■■□□ 2.29
TMEM54-204ENST00000474144 DDX17Q92841 729 aaKnown RBP29.29■■■□□ 2.28
TMEM54-204ENST00000474144 NHSL1Q5SYE7 1610 aa29.29■■■□□ 2.28
TMEM54-204ENST00000474144 C1orf167Q5SNV9 1468 aa29.29■■■□□ 2.28
TMEM54-204ENST00000474144 LRPPRCP42704 1394 aaKnown RBP29.28■■■□□ 2.28
TMEM54-204ENST00000474144 MYOM2P54296 1465 aa29.28■■■□□ 2.28
TMEM54-204ENST00000474144 NRXN1Q9ULB1 1477 aa29.28■■■□□ 2.28
TMEM54-204ENST00000474144 WAPLQ7Z5K2 1190 aa29.27■■■□□ 2.28
TMEM54-204ENST00000474144 TECPR2O15040 1411 aa29.26■■■□□ 2.27
TMEM54-204ENST00000474144 CFAP70Q5T0N1 1121 aa29.25■■■□□ 2.27
TMEM54-204ENST00000474144 C14orf93Q9H972 538 aaKnown RBP29.25■■■□□ 2.27
TMEM54-204ENST00000474144 KNDC1Q76NI1 1749 aa29.25■■■□□ 2.27
TMEM54-204ENST00000474144 SHPRHQ149N8 1683 aa29.25■■■□□ 2.27
TMEM54-204ENST00000474144 LRP6O75581 1613 aa29.24■■■□□ 2.27
TMEM54-204ENST00000474144 ABCC11Q96J66 1382 aa29.24■■■□□ 2.27
TMEM54-204ENST00000474144 PLEKHH1Q9ULM0 1364 aa29.24■■■□□ 2.27
TMEM54-204ENST00000474144 YTHDC2Q9H6S0 1430 aaKnown RBP29.23■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms