RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 FBXO41Q8TF61 875 aa28.24■■■□□ 2.11
PTCD3-210ENST00000473829 MPHOSPH9Q99550 1183 aa28.24■■■□□ 2.11
PTCD3-210ENST00000473829 KIF1BO60333 1816 aa28.24■■■□□ 2.11
PTCD3-210ENST00000473829 CPS1P31327 1500 aa28.22■■■□□ 2.11
PTCD3-210ENST00000473829 IQSEC2Q5JU85 1478 aa28.21■■■□□ 2.11
PTCD3-210ENST00000473829 PLEKHG1Q9ULL1 1385 aa28.19■■■□□ 2.1
PTCD3-210ENST00000473829 NUTM2DQ5VT03 806 aaPredicted RBP28.18■■■□□ 2.1
PTCD3-210ENST00000473829 SENP3Q9H4L4 574 aaPredicted RBP28.18■■■□□ 2.1
PTCD3-210ENST00000473829 NEXMIFQ5QGS0 1516 aa28.16■■■□□ 2.1
PTCD3-210ENST00000473829 ACIN1Q9UKV3 1341 aaKnown RBP28.16■■■□□ 2.1
PTCD3-210ENST00000473829 PPP1R15AO75807 674 aaPredicted RBP28.15■■■□□ 2.1
PTCD3-210ENST00000473829 SLC26A8Q96RN1 970 aa28.15■■■□□ 2.1
PTCD3-210ENST00000473829 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.13■■■□□ 2.09
PTCD3-210ENST00000473829 HDGFP51858 240 aaKnown RBP28.11■■■□□ 2.09
PTCD3-210ENST00000473829 ZNF326Q5BKZ1 582 aaKnown RBP28.11■■■□□ 2.09
PTCD3-210ENST00000473829 LRRC7Q96NW7 1537 aa28.11■■■□□ 2.09
PTCD3-210ENST00000473829 NRXN3Q9Y4C0 1643 aa28.1■■■□□ 2.09
PTCD3-210ENST00000473829 ADAMTS13Q76LX8 1427 aa28.1■■■□□ 2.09
PTCD3-210ENST00000473829 CCDC144AA2RUR9 1427 aa28.09■■■□□ 2.09
PTCD3-210ENST00000473829 NWD1Q149M9 1564 aa28.09■■■□□ 2.09
PTCD3-210ENST00000473829 BCANQ96GW7 911 aa28.09■■■□□ 2.09
PTCD3-210ENST00000473829 DIP2AQ14689 1571 aa28.07■■■□□ 2.08
PTCD3-210ENST00000473829 XIRP1Q702N8 1843 aaKnown RBP28.07■■■□□ 2.08
PTCD3-210ENST00000473829 HRCP23327 699 aa28.07■■■□□ 2.08
PTCD3-210ENST00000473829 SETBP1Q9Y6X0 1596 aa28.06■■■□□ 2.08
PTCD3-210ENST00000473829 PPLO60437 1756 aa28.06■■■□□ 2.08
PTCD3-210ENST00000473829 CHD2O14647 1828 aaKnown RBP28.06■■■□□ 2.08
PTCD3-210ENST00000473829 SPATA31E1Q6ZUB1 1445 aa28.03■■■□□ 2.08
PTCD3-210ENST00000473829 KCNA6P17658 529 aa28.01■■■□□ 2.07
PTCD3-210ENST00000473829 TBX22Q9Y458 520 aa28■■■□□ 2.07
PTCD3-210ENST00000473829 IFT172Q9UG01 1749 aa28■■■□□ 2.07
PTCD3-210ENST00000473829 ALKQ9UM73 1620 aa28■■■□□ 2.07
PTCD3-210ENST00000473829 NKTRP30414 1462 aaKnown RBP27.99■■■□□ 2.07
PTCD3-210ENST00000473829 UBAP1LF5GYI3 381 aa27.96■■■□□ 2.07
PTCD3-210ENST00000473829 ANKRD30BQ9BXX2 1392 aa27.96■■■□□ 2.07
PTCD3-210ENST00000473829 SETD1AO15047 1707 aaKnown RBP27.95■■■□□ 2.07
PTCD3-210ENST00000473829 RPGRIP1LQ68CZ1 1315 aa27.94■■■□□ 2.06
PTCD3-210ENST00000473829 PTPRUQ92729 1446 aa27.94■■■□□ 2.06
PTCD3-210ENST00000473829 TMEM94Q12767 1356 aa27.93■■■□□ 2.06
PTCD3-210ENST00000473829 PIK3R4Q99570 1358 aa27.93■■■□□ 2.06
PTCD3-210ENST00000473829 RGL3Q3MIN7 710 aa27.92■■■□□ 2.06
PTCD3-210ENST00000473829 XRN1Q8IZH2 1706 aaKnown RBP27.92■■■□□ 2.06
PTCD3-210ENST00000473829 RBM33Q96EV2 1170 aaKnown RBP27.91■■■□□ 2.06
PTCD3-210ENST00000473829 METP08581 1390 aa27.9■■■□□ 2.06
PTCD3-210ENST00000473829 VGFO15240 615 aaPredicted RBP27.89■■■□□ 2.06
PTCD3-210ENST00000473829 PROSER2Q86WR7 435 aaPredicted RBP27.88■■■□□ 2.05
PTCD3-210ENST00000473829 ADGRF5Q8IZF2 1346 aa27.86■■■□□ 2.05
PTCD3-210ENST00000473829 TOM1O60784 492 aa27.84■■■□□ 2.05
PTCD3-210ENST00000473829 AMOTL2Q9Y2J4 779 aa27.83■■■□□ 2.05
PTCD3-210ENST00000473829 TRIM26Q12899 539 aaPredicted RBP27.82■■■□□ 2.04
PTCD3-210ENST00000473829 PIP4K2BP78356 416 aa27.81■■■□□ 2.04
PTCD3-210ENST00000473829 MYOM2P54296 1465 aa27.79■■■□□ 2.04
PTCD3-210ENST00000473829 PIK3C2GO75747 1445 aa27.79■■■□□ 2.04
PTCD3-210ENST00000473829 SCAF1Q9H7N4 1312 aaKnown RBP27.78■■■□□ 2.04
PTCD3-210ENST00000473829 NRXN1Q9ULB1 1477 aa27.77■■■□□ 2.04
PTCD3-210ENST00000473829 ASXL1Q8IXJ9 1541 aa27.77■■■□□ 2.04
PTCD3-210ENST00000473829 NCOA3Q9Y6Q9 1424 aa27.75■■■□□ 2.03
PTCD3-210ENST00000473829 MSH6P52701 1360 aa27.73■■■□□ 2.03
PTCD3-210ENST00000473829 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.73■■■□□ 2.03
PTCD3-210ENST00000473829 PRAG1Q86YV5 1406 aa27.71■■■□□ 2.03
PTCD3-210ENST00000473829 PTCH1Q13635 1447 aa27.7■■■□□ 2.03
PTCD3-210ENST00000473829 NALCNQ8IZF0 1738 aa27.7■■■□□ 2.02
PTCD3-210ENST00000473829 LAMC1P11047 1609 aa27.69■■■□□ 2.02
PTCD3-210ENST00000473829 DHX57Q6P158 1386 aaKnown RBP27.69■■■□□ 2.02
PTCD3-210ENST00000473829 ROBO2Q9HCK4 1378 aa27.68■■■□□ 2.02
PTCD3-210ENST00000473829 ROBO1Q9Y6N7 1651 aa27.66■■■□□ 2.02
PTCD3-210ENST00000473829 HSPA1LP34931 641 aa27.66■■■□□ 2.02
PTCD3-210ENST00000473829 C14orf37Q86TY3 774 aa27.66■■■□□ 2.02
PTCD3-210ENST00000473829 KNDC1Q76NI1 1749 aa27.65■■■□□ 2.02
PTCD3-210ENST00000473829 TMEM132EQ6IEE7 984 aa27.63■■■□□ 2.01
PTCD3-210ENST00000473829 DCAF11Q8TEB1 546 aa27.63■■■□□ 2.01
PTCD3-210ENST00000473829 ADGRL3Q9HAR2 1447 aa27.63■■■□□ 2.01
PTCD3-210ENST00000473829 FAM135BQ49AJ0 1406 aa27.62■■■□□ 2.01
PTCD3-210ENST00000473829 CFAP70Q5T0N1 1121 aa27.62■■■□□ 2.01
PTCD3-210ENST00000473829 C19orf44Q9H6X5 657 aa27.62■■■□□ 2.01
PTCD3-210ENST00000473829 C14orf93Q9H972 538 aaKnown RBP27.62■■■□□ 2.01
PTCD3-210ENST00000473829 LRPPRCP42704 1394 aaKnown RBP27.61■■■□□ 2.01
PTCD3-210ENST00000473829 TECPR2O15040 1411 aa27.61■■■□□ 2.01
PTCD3-210ENST00000473829 KDM2AQ9Y2K7 1162 aa27.61■■■□□ 2.01
PTCD3-210ENST00000473829 DCCP43146 1447 aa27.6■■■□□ 2.01
PTCD3-210ENST00000473829 YTHDC2Q9H6S0 1430 aaKnown RBP27.59■■■□□ 2.01
PTCD3-210ENST00000473829 SLAIN2Q9P270 581 aa27.58■■■□□ 2.01
PTCD3-210ENST00000473829 STK26Q9P289 416 aa27.58■■■□□ 2.01
PTCD3-210ENST00000473829 ADGRB1O14514 1584 aa27.57■■■□□ 2
PTCD3-210ENST00000473829 CADPS2Q86UW7 1296 aa27.56■■■□□ 2
PTCD3-210ENST00000473829 ABCC11Q96J66 1382 aa27.56■■■□□ 2
PTCD3-210ENST00000473829 ATF3P18847 181 aa27.55■■■□□ 2
PTCD3-210ENST00000473829 SIN3AQ96ST3 1273 aa27.55■■■□□ 2
PTCD3-210ENST00000473829 MST1RQ04912 1400 aa27.54■■■□□ 2
PTCD3-210ENST00000473829 PLEKHH1Q9ULM0 1364 aa27.52■■■□□ 2
PTCD3-210ENST00000473829 STAC3Q96MF2 364 aa27.52■■■□□ 2
PTCD3-210ENST00000473829 WAPLQ7Z5K2 1190 aa27.5■■□□□ 1.99
PTCD3-210ENST00000473829 CDC42BPGQ6DT37 1551 aa27.48■■□□□ 1.99
PTCD3-210ENST00000473829 PHLPP1O60346 1717 aa27.48■■□□□ 1.99
PTCD3-210ENST00000473829 KIAA1210Q9ULL0 1709 aa27.47■■□□□ 1.99
PTCD3-210ENST00000473829 NEUROD1Q13562 356 aa27.46■■□□□ 1.99
PTCD3-210ENST00000473829 DLC1Q96QB1 1528 aa27.46■■□□□ 1.99
PTCD3-210ENST00000473829 BRINP3Q76B58 766 aa27.44■■□□□ 1.98
PTCD3-210ENST00000473829 L3MBTL2Q969R5 705 aa27.44■■□□□ 1.98
PTCD3-210ENST00000473829 COL16A1Q07092 1604 aaPredicted RBP27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms