RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 RIMS2Q9UQ26 1411 aa24.89■■□□□ 1.58
COL9A3-208ENST00000469802 PLEKHG1Q9ULL1 1385 aa24.88■■□□□ 1.57
COL9A3-208ENST00000469802 NKTRP30414 1462 aaKnown RBP24.88■■□□□ 1.57
COL9A3-208ENST00000469802 NAIPQ13075 1403 aa24.87■■□□□ 1.57
COL9A3-208ENST00000469802 PIP4K2BP78356 416 aa24.87■■□□□ 1.57
COL9A3-208ENST00000469802 SCAF1Q9H7N4 1312 aaKnown RBP24.85■■□□□ 1.57
COL9A3-208ENST00000469802 HSPA1LP34931 641 aa24.84■■□□□ 1.57
COL9A3-208ENST00000469802 DIP2AQ14689 1571 aa24.84■■□□□ 1.57
COL9A3-208ENST00000469802 SLC26A8Q96RN1 970 aa24.83■■□□□ 1.57
COL9A3-208ENST00000469802 KCNA6P17658 529 aa24.82■■□□□ 1.56
COL9A3-208ENST00000469802 HFM1A2PYH4 1435 aa24.81■■□□□ 1.56
COL9A3-208ENST00000469802 TRPM2O94759 1503 aa24.81■■□□□ 1.56
COL9A3-208ENST00000469802 MED1Q15648 1581 aaPredicted RBP24.8■■□□□ 1.56
COL9A3-208ENST00000469802 TMEM94Q12767 1356 aa24.8■■□□□ 1.56
COL9A3-208ENST00000469802 CLTCL1P53675 1640 aa24.79■■□□□ 1.56
COL9A3-208ENST00000469802 ADAMTS13Q76LX8 1427 aa24.78■■□□□ 1.56
COL9A3-208ENST00000469802 NRXN3Q9Y4C0 1643 aa24.77■■□□□ 1.56
COL9A3-208ENST00000469802 HDGFP51858 240 aaKnown RBP24.76■■□□□ 1.55
COL9A3-208ENST00000469802 KIF1BO60333 1816 aa24.75■■□□□ 1.55
COL9A3-208ENST00000469802 PPP1R15AO75807 674 aaPredicted RBP24.75■■□□□ 1.55
COL9A3-208ENST00000469802 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.75■■□□□ 1.55
COL9A3-208ENST00000469802 ILDR2Q71H61 639 aa24.74■■□□□ 1.55
COL9A3-208ENST00000469802 SETBP1Q9Y6X0 1596 aa24.73■■□□□ 1.55
COL9A3-208ENST00000469802 CHGAP10645 457 aaKnown RBP24.73■■□□□ 1.55
COL9A3-208ENST00000469802 ROBO1Q9Y6N7 1651 aa24.72■■□□□ 1.55
COL9A3-208ENST00000469802 TBX22Q9Y458 520 aa24.71■■□□□ 1.55
COL9A3-208ENST00000469802 BCANQ96GW7 911 aa24.7■■□□□ 1.54
COL9A3-208ENST00000469802 NEXMIFQ5QGS0 1516 aa24.7■■□□□ 1.54
COL9A3-208ENST00000469802 PIK3R4Q99570 1358 aa24.69■■□□□ 1.54
COL9A3-208ENST00000469802 PROSER2Q86WR7 435 aaPredicted RBP24.69■■□□□ 1.54
COL9A3-208ENST00000469802 XRN1Q8IZH2 1706 aaKnown RBP24.69■■□□□ 1.54
COL9A3-208ENST00000469802 FAM135BQ49AJ0 1406 aa24.69■■□□□ 1.54
COL9A3-208ENST00000469802 SENP3Q9H4L4 574 aaPredicted RBP24.68■■□□□ 1.54
COL9A3-208ENST00000469802 NUTM2DQ5VT03 806 aaPredicted RBP24.67■■□□□ 1.54
COL9A3-208ENST00000469802 RBM33Q96EV2 1170 aaKnown RBP24.65■■□□□ 1.54
COL9A3-208ENST00000469802 NCOA3Q9Y6Q9 1424 aa24.65■■□□□ 1.54
COL9A3-208ENST00000469802 MSH6P52701 1360 aa24.64■■□□□ 1.53
COL9A3-208ENST00000469802 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.63■■□□□ 1.53
COL9A3-208ENST00000469802 PTPRUQ92729 1446 aa24.61■■□□□ 1.53
COL9A3-208ENST00000469802 SETD1AO15047 1707 aaKnown RBP24.61■■□□□ 1.53
COL9A3-208ENST00000469802 PPLO60437 1756 aa24.59■■□□□ 1.53
COL9A3-208ENST00000469802 PHLPP1O60346 1717 aa24.57■■□□□ 1.52
COL9A3-208ENST00000469802 TRIM52Q96A61 297 aa24.56■■□□□ 1.52
COL9A3-208ENST00000469802 SOCS7O14512 581 aa24.55■■□□□ 1.52
COL9A3-208ENST00000469802 ZNF326Q5BKZ1 582 aaKnown RBP24.54■■□□□ 1.52
COL9A3-208ENST00000469802 SLC4A1APQ9BWU0 796 aaKnown RBP24.53■■□□□ 1.52
COL9A3-208ENST00000469802 COL16A1Q07092 1604 aaPredicted RBP24.52■■□□□ 1.52
COL9A3-208ENST00000469802 METP08581 1390 aa24.52■■□□□ 1.52
COL9A3-208ENST00000469802 IFT172Q9UG01 1749 aa24.52■■□□□ 1.52
COL9A3-208ENST00000469802 SLAIN2Q9P270 581 aa24.51■■□□□ 1.51
COL9A3-208ENST00000469802 AMOTL2Q9Y2J4 779 aa24.51■■□□□ 1.51
COL9A3-208ENST00000469802 NALCNQ8IZF0 1738 aa24.5■■□□□ 1.51
COL9A3-208ENST00000469802 DCCP43146 1447 aa24.5■■□□□ 1.51
COL9A3-208ENST00000469802 AHDC1Q5TGY3 1603 aaPredicted RBP24.48■■□□□ 1.51
COL9A3-208ENST00000469802 C19orf44Q9H6X5 657 aa24.47■■□□□ 1.51
COL9A3-208ENST00000469802 PRAG1Q86YV5 1406 aa24.46■■□□□ 1.51
COL9A3-208ENST00000469802 C14orf37Q86TY3 774 aa24.44■■□□□ 1.5
COL9A3-208ENST00000469802 CADPS2Q86UW7 1296 aa24.44■■□□□ 1.5
COL9A3-208ENST00000469802 RPGRIP1LQ68CZ1 1315 aa24.43■■□□□ 1.5
COL9A3-208ENST00000469802 PTCH1Q13635 1447 aa24.43■■□□□ 1.5
COL9A3-208ENST00000469802 SPATA31E1Q6ZUB1 1445 aa24.43■■□□□ 1.5
COL9A3-208ENST00000469802 CCDC144AA2RUR9 1427 aa24.42■■□□□ 1.5
COL9A3-208ENST00000469802 ADGRL3Q9HAR2 1447 aa24.42■■□□□ 1.5
COL9A3-208ENST00000469802 SHPRHQ149N8 1683 aa24.41■■□□□ 1.5
COL9A3-208ENST00000469802 FOXD1Q16676 465 aa24.41■■□□□ 1.5
COL9A3-208ENST00000469802 PHF23Q9BUL5 403 aaPredicted RBP24.41■■□□□ 1.5
COL9A3-208ENST00000469802 NHSL1Q5SYE7 1610 aa24.41■■□□□ 1.5
COL9A3-208ENST00000469802 VGFO15240 615 aaPredicted RBP24.4■■□□□ 1.5
COL9A3-208ENST00000469802 MST1RQ04912 1400 aa24.39■■□□□ 1.5
COL9A3-208ENST00000469802 SETD5Q9C0A6 1442 aa24.39■■□□□ 1.5
COL9A3-208ENST00000469802 ATF3P18847 181 aa24.39■■□□□ 1.49
COL9A3-208ENST00000469802 MPHOSPH9Q99550 1183 aa24.39■■□□□ 1.49
COL9A3-208ENST00000469802 ASXL1Q8IXJ9 1541 aa24.38■■□□□ 1.49
COL9A3-208ENST00000469802 JCADQ9P266 1359 aa24.37■■□□□ 1.49
COL9A3-208ENST00000469802 ACIN1Q9UKV3 1341 aaKnown RBP24.35■■□□□ 1.49
COL9A3-208ENST00000469802 RGS17Q9UGC6 210 aaPredicted RBP24.34■■□□□ 1.49
COL9A3-208ENST00000469802 KNDC1Q76NI1 1749 aa24.33■■□□□ 1.49
COL9A3-208ENST00000469802 ROBO2Q9HCK4 1378 aa24.33■■□□□ 1.49
COL9A3-208ENST00000469802 LAMC1P11047 1609 aa24.32■■□□□ 1.48
COL9A3-208ENST00000469802 BRINP3Q76B58 766 aa24.32■■□□□ 1.48
COL9A3-208ENST00000469802 RAB3GAP2Q9H2M9 1393 aa24.3■■□□□ 1.48
COL9A3-208ENST00000469802 LRP6O75581 1613 aa24.3■■□□□ 1.48
COL9A3-208ENST00000469802 ANKRD30BQ9BXX2 1392 aa24.29■■□□□ 1.48
COL9A3-208ENST00000469802 PIK3C2GO75747 1445 aa24.28■■□□□ 1.48
COL9A3-208ENST00000469802 ADGRF5Q8IZF2 1346 aa24.28■■□□□ 1.48
COL9A3-208ENST00000469802 CDC42BPGQ6DT37 1551 aa24.27■■□□□ 1.48
COL9A3-208ENST00000469802 TECPR2O15040 1411 aa24.27■■□□□ 1.48
COL9A3-208ENST00000469802 SPATA31A6Q5VVP1 1343 aa24.25■■□□□ 1.47
COL9A3-208ENST00000469802 C1orf167Q5SNV9 1468 aa24.25■■□□□ 1.47
COL9A3-208ENST00000469802 NRXN1Q9ULB1 1477 aa24.25■■□□□ 1.47
COL9A3-208ENST00000469802 MYOM2P54296 1465 aa24.24■■□□□ 1.47
COL9A3-208ENST00000469802 RGL3Q3MIN7 710 aa24.22■■□□□ 1.47
COL9A3-208ENST00000469802 LRPPRCP42704 1394 aaKnown RBP24.19■■□□□ 1.46
COL9A3-208ENST00000469802 POTEAQ6S8J7 498 aa24.18■■□□□ 1.46
COL9A3-208ENST00000469802 ABCC11Q96J66 1382 aa24.16■■□□□ 1.46
COL9A3-208ENST00000469802 FMN2Q9NZ56 1722 aa24.15■■□□□ 1.46
COL9A3-208ENST00000469802 YTHDC2Q9H6S0 1430 aaKnown RBP24.14■■□□□ 1.45
COL9A3-208ENST00000469802 PNPLA6Q8IY17 1366 aa24.12■■□□□ 1.45
COL9A3-208ENST00000469802 COL22A1Q8NFW1 1626 aaPredicted RBP24.11■■□□□ 1.45
COL9A3-208ENST00000469802 HRCP23327 699 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms