RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 POLR1AO95602 1720 aaPredicted RBP29.48■■■□□ 2.31
NPHP4-206ENST00000468253 RPGRIP1LQ68CZ1 1315 aa29.48■■■□□ 2.31
NPHP4-206ENST00000468253 ZNF335Q9H4Z2 1342 aaPredicted RBP29.48■■■□□ 2.31
NPHP4-206ENST00000468253 PLEKHG1Q9ULL1 1385 aa29.47■■■□□ 2.31
NPHP4-206ENST00000468253 CCDC144AA2RUR9 1427 aa29.46■■■□□ 2.31
NPHP4-206ENST00000468253 BCANQ96GW7 911 aa29.43■■■□□ 2.3
NPHP4-206ENST00000468253 TBX22Q9Y458 520 aa29.43■■■□□ 2.3
NPHP4-206ENST00000468253 CLTCL1P53675 1640 aa29.42■■■□□ 2.3
NPHP4-206ENST00000468253 ANKRD30BQ9BXX2 1392 aa29.42■■■□□ 2.3
NPHP4-206ENST00000468253 LTBP4Q8N2S1 1624 aa29.42■■■□□ 2.3
NPHP4-206ENST00000468253 VGFO15240 615 aaPredicted RBP29.41■■■□□ 2.3
NPHP4-206ENST00000468253 IQGAP1P46940 1657 aa29.4■■■□□ 2.3
NPHP4-206ENST00000468253 NUTM2DQ5VT03 806 aaPredicted RBP29.4■■■□□ 2.3
NPHP4-206ENST00000468253 SLC26A8Q96RN1 970 aa29.4■■■□□ 2.3
NPHP4-206ENST00000468253 KCNA6P17658 529 aa29.36■■■□□ 2.29
NPHP4-206ENST00000468253 SPATA31E1Q6ZUB1 1445 aa29.35■■■□□ 2.29
NPHP4-206ENST00000468253 MYO5BQ9ULV0 1848 aa29.34■■■□□ 2.29
NPHP4-206ENST00000468253 RGL3Q3MIN7 710 aa29.33■■■□□ 2.29
NPHP4-206ENST00000468253 FBXO41Q8TF61 875 aa29.32■■■□□ 2.28
NPHP4-206ENST00000468253 CPS1P31327 1500 aa29.31■■■□□ 2.28
NPHP4-206ENST00000468253 KIF1BO60333 1816 aa29.31■■■□□ 2.28
NPHP4-206ENST00000468253 IQSEC2Q5JU85 1478 aa29.3■■■□□ 2.28
NPHP4-206ENST00000468253 ADAMTS13Q76LX8 1427 aa29.28■■■□□ 2.28
NPHP4-206ENST00000468253 PIK3R4Q99570 1358 aa29.28■■■□□ 2.28
NPHP4-206ENST00000468253 NEXMIFQ5QGS0 1516 aa29.27■■■□□ 2.28
NPHP4-206ENST00000468253 STAC3Q96MF2 364 aa29.24■■■□□ 2.27
NPHP4-206ENST00000468253 SENP3Q9H4L4 574 aaPredicted RBP29.24■■■□□ 2.27
NPHP4-206ENST00000468253 SETBP1Q9Y6X0 1596 aa29.2■■■□□ 2.26
NPHP4-206ENST00000468253 DIP2AQ14689 1571 aa29.19■■■□□ 2.26
NPHP4-206ENST00000468253 ILDR1Q86SU0 546 aaPredicted RBP29.18■■■□□ 2.26
NPHP4-206ENST00000468253 PROSER2Q86WR7 435 aaPredicted RBP29.18■■■□□ 2.26
NPHP4-206ENST00000468253 ADGRF5Q8IZF2 1346 aa29.18■■■□□ 2.26
NPHP4-206ENST00000468253 LRRC7Q96NW7 1537 aa29.17■■■□□ 2.26
NPHP4-206ENST00000468253 AMOTL2Q9Y2J4 779 aa29.16■■■□□ 2.26
NPHP4-206ENST00000468253 METP08581 1390 aa29.13■■■□□ 2.25
NPHP4-206ENST00000468253 DHX57Q6P158 1386 aaKnown RBP29.13■■■□□ 2.25
NPHP4-206ENST00000468253 TOM1O60784 492 aa29.12■■■□□ 2.25
NPHP4-206ENST00000468253 NKTRP30414 1462 aaKnown RBP29.1■■■□□ 2.25
NPHP4-206ENST00000468253 UBAP1LF5GYI3 381 aa29.1■■■□□ 2.25
NPHP4-206ENST00000468253 PCGF6Q9BYE7 350 aa29.1■■■□□ 2.25
NPHP4-206ENST00000468253 STRCP1A6NGW2 1772 aa29.1■■■□□ 2.25
NPHP4-206ENST00000468253 TMEM94Q12767 1356 aa29.1■■■□□ 2.25
NPHP4-206ENST00000468253 NCOA3Q9Y6Q9 1424 aa29.1■■■□□ 2.25
NPHP4-206ENST00000468253 DCAF11Q8TEB1 546 aa29.09■■■□□ 2.25
NPHP4-206ENST00000468253 C14orf93Q9H972 538 aaKnown RBP29.09■■■□□ 2.25
NPHP4-206ENST00000468253 NRXN3Q9Y4C0 1643 aa29.09■■■□□ 2.25
NPHP4-206ENST00000468253 PTPRUQ92729 1446 aa29.08■■■□□ 2.25
NPHP4-206ENST00000468253 NWD1Q149M9 1564 aa29.08■■■□□ 2.25
NPHP4-206ENST00000468253 PPLO60437 1756 aa29.08■■■□□ 2.25
NPHP4-206ENST00000468253 CHD2O14647 1828 aaKnown RBP29.06■■■□□ 2.24
NPHP4-206ENST00000468253 MYOM2P54296 1465 aa29.04■■■□□ 2.24
NPHP4-206ENST00000468253 NRXN1Q9ULB1 1477 aa29.04■■■□□ 2.24
NPHP4-206ENST00000468253 PIK3C2GO75747 1445 aa29.04■■■□□ 2.24
NPHP4-206ENST00000468253 ALKQ9UM73 1620 aa29.04■■■□□ 2.24
NPHP4-206ENST00000468253 KDM2AQ9Y2K7 1162 aa29.03■■■□□ 2.24
NPHP4-206ENST00000468253 SIN3AQ96ST3 1273 aa29.01■■■□□ 2.23
NPHP4-206ENST00000468253 RBM33Q96EV2 1170 aaKnown RBP29■■■□□ 2.23
NPHP4-206ENST00000468253 C19orf44Q9H6X5 657 aa29■■■□□ 2.23
NPHP4-206ENST00000468253 CFAP70Q5T0N1 1121 aa28.98■■■□□ 2.23
NPHP4-206ENST00000468253 IFT172Q9UG01 1749 aa28.97■■■□□ 2.23
NPHP4-206ENST00000468253 PRAG1Q86YV5 1406 aa28.96■■■□□ 2.23
NPHP4-206ENST00000468253 SIRT1Q96EB6 747 aa28.96■■■□□ 2.23
NPHP4-206ENST00000468253 NEUROD1Q13562 356 aa28.95■■■□□ 2.22
NPHP4-206ENST00000468253 TMEM132EQ6IEE7 984 aa28.95■■■□□ 2.22
NPHP4-206ENST00000468253 MSH6P52701 1360 aa28.95■■■□□ 2.22
NPHP4-206ENST00000468253 ABCC11Q96J66 1382 aa28.95■■■□□ 2.22
NPHP4-206ENST00000468253 LRPPRCP42704 1394 aaKnown RBP28.94■■■□□ 2.22
NPHP4-206ENST00000468253 C14orf37Q86TY3 774 aa28.93■■■□□ 2.22
NPHP4-206ENST00000468253 L3MBTL2Q969R5 705 aa28.93■■■□□ 2.22
NPHP4-206ENST00000468253 CADPS2Q86UW7 1296 aa28.91■■■□□ 2.22
NPHP4-206ENST00000468253 PTCH1Q13635 1447 aa28.9■■■□□ 2.22
NPHP4-206ENST00000468253 XRN1Q8IZH2 1706 aaKnown RBP28.89■■■□□ 2.22
NPHP4-206ENST00000468253 PIP4K2BP78356 416 aa28.89■■■□□ 2.22
NPHP4-206ENST00000468253 STK26Q9P289 416 aa28.89■■■□□ 2.22
NPHP4-206ENST00000468253 ROBO2Q9HCK4 1378 aa28.88■■■□□ 2.21
NPHP4-206ENST00000468253 ATF3P18847 181 aa28.88■■■□□ 2.21
NPHP4-206ENST00000468253 SLAIN2Q9P270 581 aa28.88■■■□□ 2.21
NPHP4-206ENST00000468253 SETD1AO15047 1707 aaKnown RBP28.88■■■□□ 2.21
NPHP4-206ENST00000468253 TECPR2O15040 1411 aa28.87■■■□□ 2.21
NPHP4-206ENST00000468253 YTHDC2Q9H6S0 1430 aaKnown RBP28.86■■■□□ 2.21
NPHP4-206ENST00000468253 XIRP1Q702N8 1843 aaKnown RBP28.85■■■□□ 2.21
NPHP4-206ENST00000468253 CLSPNQ9HAW4 1339 aa28.84■■■□□ 2.21
NPHP4-206ENST00000468253 FAM135BQ49AJ0 1406 aa28.84■■■□□ 2.21
NPHP4-206ENST00000468253 SCAF1Q9H7N4 1312 aaKnown RBP28.83■■■□□ 2.21
NPHP4-206ENST00000468253 DCCP43146 1447 aa28.81■■■□□ 2.2
NPHP4-206ENST00000468253 WAPLQ7Z5K2 1190 aa28.8■■■□□ 2.2
NPHP4-206ENST00000468253 ASXL1Q8IXJ9 1541 aa28.79■■■□□ 2.2
NPHP4-206ENST00000468253 ADGRL3Q9HAR2 1447 aa28.78■■■□□ 2.2
NPHP4-206ENST00000468253 LAMC1P11047 1609 aa28.78■■■□□ 2.2
NPHP4-206ENST00000468253 ADGRB1O14514 1584 aa28.75■■■□□ 2.19
NPHP4-206ENST00000468253 HSPA1LP34931 641 aa28.73■■■□□ 2.19
NPHP4-206ENST00000468253 TIMELESSQ9UNS1 1208 aa28.73■■■□□ 2.19
NPHP4-206ENST00000468253 TRAK1Q9UPV9 953 aa28.73■■■□□ 2.19
NPHP4-206ENST00000468253 TONSLQ96HA7 1378 aa28.73■■■□□ 2.19
NPHP4-206ENST00000468253 NBPF1Q3BBV0 1214 aa28.72■■■□□ 2.19
NPHP4-206ENST00000468253 PRAM1Q96QH2 718 aa28.71■■■□□ 2.19
NPHP4-206ENST00000468253 POGKQ9P215 609 aa28.71■■■□□ 2.19
NPHP4-206ENST00000468253 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.7■■■□□ 2.19
NPHP4-206ENST00000468253 DLC1Q96QB1 1528 aa28.69■■■□□ 2.18
NPHP4-206ENST00000468253 PLEKHH1Q9ULM0 1364 aa28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms