RNA–Protein interactions for RNA: ENST00000467273.5

PTCD3-207, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 757 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-207ENST00000467273 MAP3K7O43318 606 aa10.27□□□□□ -0.77
PTCD3-207ENST00000467273 CAMK2BQ13554 666 aa10.27□□□□□ -0.77
PTCD3-207ENST00000467273 PRKD2Q9BZL6 878 aa10.27□□□□□ -0.77
PTCD3-207ENST00000467273 TSKSQ9UJT2 592 aa10.27□□□□□ -0.77
PTCD3-207ENST00000467273 TSR1Q2NL82 804 aaKnown RBP10.26□□□□□ -0.77
PTCD3-207ENST00000467273 SNAPC4Q5SXM2 1469 aa10.25□□□□□ -0.77
PTCD3-207ENST00000467273 GAPVD1Q14C86 1478 aa10.24□□□□□ -0.77
PTCD3-207ENST00000467273 SMAPO00193 183 aa10.24□□□□□ -0.77
PTCD3-207ENST00000467273 EN1Q05925 392 aaPredicted RBP10.24□□□□□ -0.77
PTCD3-207ENST00000467273 TJAP1Q5JTD0 557 aa10.24□□□□□ -0.77
PTCD3-207ENST00000467273 SAMD7Q7Z3H4 446 aa10.24□□□□□ -0.77
PTCD3-207ENST00000467273 CHMP7Q8WUX9 453 aaPredicted RBP10.24□□□□□ -0.77
PTCD3-207ENST00000467273 SOGA1O94964 1423 aa10.24□□□□□ -0.77
PTCD3-207ENST00000467273 SYNJ2O15056 1496 aa10.23□□□□□ -0.77
PTCD3-207ENST00000467273 GRIN2BQ13224 1484 aa10.23□□□□□ -0.77
PTCD3-207ENST00000467273 NRG2O14511 850 aaPredicted RBP10.22□□□□□ -0.77
PTCD3-207ENST00000467273 MTRQ99707 1265 aa10.22□□□□□ -0.77
PTCD3-207ENST00000467273 TDRD9Q8NDG6 1382 aaKnown RBP10.22□□□□□ -0.77
PTCD3-207ENST00000467273 RNF40O75150 1001 aa10.21□□□□□ -0.77
PTCD3-207ENST00000467273 PPP1R18Q6NYC8 613 aa10.21□□□□□ -0.77
PTCD3-207ENST00000467273 IL21Q9HBE4 155 aa10.2□□□□□ -0.78
PTCD3-207ENST00000467273 RAD54L2Q9Y4B4 1467 aa10.2□□□□□ -0.78
PTCD3-207ENST00000467273 CDCA7LQ96GN5 454 aa10.19□□□□□ -0.78
PTCD3-207ENST00000467273 PLCB2Q00722 1185 aa10.18□□□□□ -0.78
PTCD3-207ENST00000467273 V9GY48 417 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-207ENST00000467273 NBPF26B4DH59 902 aa10.16□□□□□ -0.78
PTCD3-207ENST00000467273 PRSS12P56730 875 aa10.16□□□□□ -0.78
PTCD3-207ENST00000467273 ZNF516Q92618 1163 aa10.16□□□□□ -0.78
PTCD3-207ENST00000467273 FAM198AQ9UFP1 575 aa10.16□□□□□ -0.78
PTCD3-207ENST00000467273 PNMA3Q9UL41 463 aa10.16□□□□□ -0.78
PTCD3-207ENST00000467273 FGD5Q6ZNL6 1462 aa10.16□□□□□ -0.78
PTCD3-207ENST00000467273 PDIA6Q15084 440 aa10.15□□□□□ -0.78
PTCD3-207ENST00000467273 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.15□□□□□ -0.78
PTCD3-207ENST00000467273 C3orf80F5H4A9 247 aa10.14□□□□□ -0.79
PTCD3-207ENST00000467273 TATDN2Q93075 761 aa10.14□□□□□ -0.79
PTCD3-207ENST00000467273 PDZRN3Q9UPQ7 1066 aa10.14□□□□□ -0.79
PTCD3-207ENST00000467273 PBRM1Q86U86 1689 aa10.14□□□□□ -0.79
PTCD3-207ENST00000467273 ZNF787Q6DD87 383 aa10.13□□□□□ -0.79
PTCD3-207ENST00000467273 KIF13AQ9H1H9 1805 aa10.12□□□□□ -0.79
PTCD3-207ENST00000467273 HDGFP51858 240 aaKnown RBP10.12□□□□□ -0.79
PTCD3-207ENST00000467273 GRXCR2A6NFK2 248 aa10.11□□□□□ -0.79
PTCD3-207ENST00000467273 APLP1P51693 650 aa10.11□□□□□ -0.79
PTCD3-207ENST00000467273 NKX2-3Q8TAU0 364 aa10.11□□□□□ -0.79
PTCD3-207ENST00000467273 CERKQ8TCT0 537 aa10.11□□□□□ -0.79
PTCD3-207ENST00000467273 SPDYE16A6NNV3 312 aaPredicted RBP10.1□□□□□ -0.79
PTCD3-207ENST00000467273 CUX1P39880 1505 aa10.09□□□□□ -0.79
PTCD3-207ENST00000467273 SHROOM2Q13796 1616 aa10.09□□□□□ -0.79
PTCD3-207ENST00000467273 ABCA5Q8WWZ7 1642 aa10.09□□□□□ -0.79
PTCD3-207ENST00000467273 PRIM1P49642 420 aaKnown RBP10.09□□□□□ -0.79
PTCD3-207ENST00000467273 COPS2P61201 443 aa10.09□□□□□ -0.79
PTCD3-207ENST00000467273 NUDT18Q6ZVK8 323 aa10.09□□□□□ -0.79
PTCD3-207ENST00000467273 GGCXP38435 758 aa10.08□□□□□ -0.8
PTCD3-207ENST00000467273 GRIN2AQ12879 1464 aa10.08□□□□□ -0.8
PTCD3-207ENST00000467273 CEP170Q5SW79 1584 aa10.08□□□□□ -0.8
PTCD3-207ENST00000467273 NUP160Q12769 1436 aa10.07□□□□□ -0.8
PTCD3-207ENST00000467273 ABCA10Q8WWZ4 1543 aa10.07□□□□□ -0.8
PTCD3-207ENST00000467273 ERCC6L2Q5T890 1561 aa10.07□□□□□ -0.8
PTCD3-207ENST00000467273 CDHR5Q9HBB8 845 aa10.07□□□□□ -0.8
PTCD3-207ENST00000467273 HAP1P54257 671 aaPredicted RBP10.06□□□□□ -0.8
PTCD3-207ENST00000467273 ABCC10Q5T3U5 1492 aa10.04□□□□□ -0.8
PTCD3-207ENST00000467273 MAPKBP1O60336 1514 aa10.03□□□□□ -0.8
PTCD3-207ENST00000467273 NECTIN2Q92692 538 aa10.03□□□□□ -0.8
PTCD3-207ENST00000467273 ADAMTS12P58397 1594 aa10.02□□□□□ -0.81
PTCD3-207ENST00000467273 SWT1Q5T5J6 900 aaKnown RBP10.02□□□□□ -0.81
PTCD3-207ENST00000467273 ZNF775Q96BV0 537 aaPredicted RBP10.02□□□□□ -0.81
PTCD3-207ENST00000467273 KDM6BO15054 1643 aa10.01□□□□□ -0.81
PTCD3-207ENST00000467273 SLF2Q8IX21 1173 aa10.01□□□□□ -0.81
PTCD3-207ENST00000467273 BBXQ8WY36 941 aaPredicted RBP10.01□□□□□ -0.81
PTCD3-207ENST00000467273 RBM27Q9P2N5 1060 aaKnown RBP10□□□□□ -0.81
PTCD3-207ENST00000467273 DIP2BQ9P265 1576 aa10□□□□□ -0.81
PTCD3-207ENST00000467273 FHAD1B1AJZ9 1412 aa9.99□□□□□ -0.81
PTCD3-207ENST00000467273 FAM69CQ0P6D2 419 aa9.99□□□□□ -0.81
PTCD3-207ENST00000467273 E2F4Q16254 413 aa9.99□□□□□ -0.81
PTCD3-207ENST00000467273 ZPR1O75312 459 aa9.98□□□□□ -0.81
PTCD3-207ENST00000467273 SLC4A3P48751 1232 aa9.98□□□□□ -0.81
PTCD3-207ENST00000467273 PADI6Q6TGC4 694 aa9.98□□□□□ -0.81
PTCD3-207ENST00000467273 TMUB1Q9BVT8 246 aa9.98□□□□□ -0.81
PTCD3-207ENST00000467273 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.98□□□□□ -0.81
PTCD3-207ENST00000467273 OSBPP22059 807 aa9.97□□□□□ -0.81
PTCD3-207ENST00000467273 PKDCCQ504Y2 493 aa9.97□□□□□ -0.81
PTCD3-207ENST00000467273 PRG4Q92954 1404 aaPredicted RBP9.96□□□□□ -0.82
PTCD3-207ENST00000467273 ERICH3Q5RHP9 1530 aa9.96□□□□□ -0.82
PTCD3-207ENST00000467273 SLC19A1P41440 591 aa9.95□□□□□ -0.82
PTCD3-207ENST00000467273 PCDHB3Q9Y5E6 796 aa9.95□□□□□ -0.82
PTCD3-207ENST00000467273 WRNQ14191 1432 aaPredicted RBP eCLIP9.95□□□□□ -0.82
PTCD3-207ENST00000467273 RNF223E7ERA6 249 aa9.94□□□□□ -0.82
PTCD3-207ENST00000467273 TRIM67Q6ZTA4 783 aa9.94□□□□□ -0.82
PTCD3-207ENST00000467273 PAXIP1Q6ZW49 1069 aaPredicted RBP9.94□□□□□ -0.82
PTCD3-207ENST00000467273 BLOC1S3Q6QNY0 202 aa9.93□□□□□ -0.82
PTCD3-207ENST00000467273 CFAP44Q96MT7 982 aa9.93□□□□□ -0.82
PTCD3-207ENST00000467273 PRR14Q9BWN1 585 aa9.93□□□□□ -0.82
PTCD3-207ENST00000467273 WDR70Q9NW82 654 aa9.93□□□□□ -0.82
PTCD3-207ENST00000467273 TLL1O43897 1013 aa9.92□□□□□ -0.82
PTCD3-207ENST00000467273 TTC13Q8NBP0 860 aa9.91□□□□□ -0.82
PTCD3-207ENST00000467273 ADCY10Q96PN6 1610 aa9.91□□□□□ -0.82
PTCD3-207ENST00000467273 MYT1Q01538 1121 aa9.9□□□□□ -0.82
PTCD3-207ENST00000467273 ARIH1Q9Y4X5 557 aaPredicted RBP9.9□□□□□ -0.82
PTCD3-207ENST00000467273 RUSC2Q8N2Y8 1516 aa9.9□□□□□ -0.82
PTCD3-207ENST00000467273 EMID1Q96A84 441 aaPredicted RBP9.89□□□□□ -0.83
PTCD3-207ENST00000467273 NPDC1Q9NQX5 325 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms