RNA–Protein interactions for RNA: ENST00000467273.5

PTCD3-207, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 757 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-207ENST00000467273 AEBP2Q6ZN18 517 aaPredicted RBP26.66■■□□□ 1.86
PTCD3-207ENST00000467273 CHIC1Q5VXU3 224 aa25.01■■□□□ 1.59
PTCD3-207ENST00000467273 SENP3Q9H4L4 574 aaPredicted RBP22.82■■□□□ 1.24
PTCD3-207ENST00000467273 PHF23Q9BUL5 403 aaPredicted RBP22.47■■□□□ 1.19
PTCD3-207ENST00000467273 FOXD1Q16676 465 aa21.3■■□□□ 1
PTCD3-207ENST00000467273 POTEDQ86YR6 584 aa20.12■□□□□ 0.81
PTCD3-207ENST00000467273 MSH5O43196 834 aa20.06■□□□□ 0.8
PTCD3-207ENST00000467273 PIAS4Q8N2W9 510 aaPredicted RBP19.89■□□□□ 0.77
PTCD3-207ENST00000467273 PLPPR3Q6T4P5 718 aa19.86■□□□□ 0.77
PTCD3-207ENST00000467273 PPP6R1Q9UPN7 881 aa19.66■□□□□ 0.74
PTCD3-207ENST00000467273 ADRA2BP18089 450 aa19.62■□□□□ 0.73
PTCD3-207ENST00000467273 MAPK8IP2Q13387 824 aaPredicted RBP18.11■□□□□ 0.49
PTCD3-207ENST00000467273 DMRT2Q9Y5R5 561 aa18.02■□□□□ 0.48
PTCD3-207ENST00000467273 SCAF1Q9H7N4 1312 aaKnown RBP17.94■□□□□ 0.46
PTCD3-207ENST00000467273 CACNB1Q02641 598 aaPredicted RBP17.46■□□□□ 0.39
PTCD3-207ENST00000467273 DCAF8L1A6NGE4 600 aa17.45■□□□□ 0.38
PTCD3-207ENST00000467273 PPP4R3CPQ6ZMV5 832 aa17.37■□□□□ 0.37
PTCD3-207ENST00000467273 HOXD11P31277 338 aaPredicted RBP17.2■□□□□ 0.34
PTCD3-207ENST00000467273 CNKSR2Q8WXI2 1034 aa17.1■□□□□ 0.33
PTCD3-207ENST00000467273 RNF39Q9H2S5 420 aa17.07■□□□□ 0.32
PTCD3-207ENST00000467273 RNF216Q9NWF9 866 aaPredicted RBP17.01■□□□□ 0.31
PTCD3-207ENST00000467273 C1QBPQ07021 282 aaKnown RBP16.8■□□□□ 0.28
PTCD3-207ENST00000467273 NCBP3Q53F19 620 aaKnown RBP16.62■□□□□ 0.25
PTCD3-207ENST00000467273 DNAJC5BQ9UF47 199 aa16.61■□□□□ 0.25
PTCD3-207ENST00000467273 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.5■□□□□ 0.237e-11■■□□□ 11.9
PTCD3-207ENST00000467273 NPM3O75607 178 aaKnown RBP16.37■□□□□ 0.21
PTCD3-207ENST00000467273 U3KPZ7 1027 aaPredicted RBP16.07■□□□□ 0.16
PTCD3-207ENST00000467273 CAPN15O75808 1086 aa15.99■□□□□ 0.15
PTCD3-207ENST00000467273 SPINK5Q9NQ38 1064 aaPredicted RBP15.96■□□□□ 0.15
PTCD3-207ENST00000467273 DSG3P32926 999 aa15.89■□□□□ 0.13
PTCD3-207ENST00000467273 KCNA4P22459 653 aa15.8■□□□□ 0.12
PTCD3-207ENST00000467273 POTEHQ6S545 545 aa15.72■□□□□ 0.11
PTCD3-207ENST00000467273 SLC4A2P04920 1241 aa15.69■□□□□ 0.1
PTCD3-207ENST00000467273 TRHP20396 242 aaPredicted RBP15.66■□□□□ 0.1
PTCD3-207ENST00000467273 ABCB7O75027 752 aa15.6■□□□□ 0.09
PTCD3-207ENST00000467273 APLP2Q06481 763 aa15.6■□□□□ 0.09
PTCD3-207ENST00000467273 ZNF219Q9P2Y4 722 aaPredicted RBP15.56■□□□□ 0.08
PTCD3-207ENST00000467273 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.5■□□□□ 0.07
PTCD3-207ENST00000467273 HNRNPUL2Q1KMD3 747 aaKnown RBP15.5■□□□□ 0.07
PTCD3-207ENST00000467273 SAMD1Q6SPF0 538 aaPredicted RBP15.4■□□□□ 0.06
PTCD3-207ENST00000467273 RBM42Q9BTD8 480 aaKnown RBP15.19■□□□□ 0.02
PTCD3-207ENST00000467273 MYCNP04198 464 aaPredicted RBP15.16■□□□□ 0.02
PTCD3-207ENST00000467273 POLA2Q14181 598 aa15.12■□□□□ 0.01
PTCD3-207ENST00000467273 CHRDL2Q6WN34 429 aa15□□□□□ -0.01
PTCD3-207ENST00000467273 SLC4A1APQ9BWU0 796 aaKnown RBP14.86□□□□□ -0.03
PTCD3-207ENST00000467273 FOXD4L1Q9NU39 408 aa14.83□□□□□ -0.04
PTCD3-207ENST00000467273 ATF5Q9Y2D1 282 aaPredicted RBP14.83□□□□□ -0.04
PTCD3-207ENST00000467273 ZBTB12Q9Y330 459 aaPredicted RBP14.78□□□□□ -0.04
PTCD3-207ENST00000467273 AKT1S1Q96B36 256 aa14.75□□□□□ -0.05
PTCD3-207ENST00000467273 OSCARQ8IYS5 282 aa14.69□□□□□ -0.06
PTCD3-207ENST00000467273 REM2Q8IYK8 340 aaPredicted RBP14.63□□□□□ -0.07
PTCD3-207ENST00000467273 SP7Q8TDD2 431 aaPredicted RBP14.59□□□□□ -0.07
PTCD3-207ENST00000467273 PIP4P2Q8N4L2 257 aa14.56□□□□□ -0.08
PTCD3-207ENST00000467273 PITPNM1O00562 1244 aa14.5□□□□□ -0.09
PTCD3-207ENST00000467273 ZBTB22O15209 634 aa14.5□□□□□ -0.09
PTCD3-207ENST00000467273 HAX1O00165 279 aa14.43□□□□□ -0.1
PTCD3-207ENST00000467273 FXR2P51116 673 aaKnown RBP eCLIP14.37□□□□□ -0.11
PTCD3-207ENST00000467273 ATXN8OSP0DMR3 200 aa14.34□□□□□ -0.11
PTCD3-207ENST00000467273 FBLN2P98095 1184 aa14.31□□□□□ -0.12
PTCD3-207ENST00000467273 SPDYE2BA6NHP3 402 aa14.28□□□□□ -0.12
PTCD3-207ENST00000467273 SPDYE6P0CI01 402 aa14.28□□□□□ -0.12
PTCD3-207ENST00000467273 SPDYE2Q495Y8 402 aa14.28□□□□□ -0.12
PTCD3-207ENST00000467273 CLEC11AQ9Y240 323 aa14.19□□□□□ -0.14
PTCD3-207ENST00000467273 EVX2Q03828 476 aa14.17□□□□□ -0.14
PTCD3-207ENST00000467273 PRKAR2AP13861 404 aaKnown RBP14.14□□□□□ -0.15
PTCD3-207ENST00000467273 SPDYE1Q8NFV5 336 aaPredicted RBP14.13□□□□□ -0.15
PTCD3-207ENST00000467273 MKRN4PQ13434 485 aaPredicted RBP14.12□□□□□ -0.15
PTCD3-207ENST00000467273 ZNF692Q9BU19 519 aaPredicted RBP14.1□□□□□ -0.15
PTCD3-207ENST00000467273 SSUH2Q9Y2M2 353 aa14.03□□□□□ -0.16
PTCD3-207ENST00000467273 NISCHQ9Y2I1 1504 aa13.96□□□□□ -0.17
PTCD3-207ENST00000467273 C19orf67A6NJJ6 358 aa13.94□□□□□ -0.18
PTCD3-207ENST00000467273 CHADLQ6NUI6 762 aa13.93□□□□□ -0.18
PTCD3-207ENST00000467273 PABPN1Q86U42 306 aaKnown RBP eCLIP13.89□□□□□ -0.19
PTCD3-207ENST00000467273 PRR29P0C7W0 189 aa13.87□□□□□ -0.19
PTCD3-207ENST00000467273 GABBR2O75899 941 aa13.84□□□□□ -0.19
PTCD3-207ENST00000467273 CD44P16070 742 aaKnown RBP13.68□□□□□ -0.22
PTCD3-207ENST00000467273 LHX8Q68G74 356 aa13.68□□□□□ -0.22
PTCD3-207ENST00000467273 FARP1Q9Y4F1 1045 aaPredicted RBP13.64□□□□□ -0.23
PTCD3-207ENST00000467273 CSRNP3Q8WYN3 585 aa13.53□□□□□ -0.24
PTCD3-207ENST00000467273 POTEIP0CG38 1075 aa13.52□□□□□ -0.25
PTCD3-207ENST00000467273 DCBLD2Q96PD2 775 aa13.46□□□□□ -0.25
PTCD3-207ENST00000467273 CLCN6P51797 869 aa13.44□□□□□ -0.26
PTCD3-207ENST00000467273 ZRANB1Q9UGI0 708 aa13.44□□□□□ -0.26
PTCD3-207ENST00000467273 ZNF579Q8NAF0 562 aaKnown RBP13.4□□□□□ -0.26
PTCD3-207ENST00000467273 CREBZFQ9NS37 354 aa13.4□□□□□ -0.26
PTCD3-207ENST00000467273 STAG3Q9UJ98 1225 aa13.4□□□□□ -0.26
PTCD3-207ENST00000467273 SPDYE4A6NLX3 237 aa13.33□□□□□ -0.28
PTCD3-207ENST00000467273 EHMT2Q96KQ7 1210 aa13.31□□□□□ -0.28
PTCD3-207ENST00000467273 GALR2O43603 387 aaPredicted RBP13.3□□□□□ -0.28
PTCD3-207ENST00000467273 PAK3O75914 559 aaPredicted RBP13.28□□□□□ -0.28
PTCD3-207ENST00000467273 PHF12Q96QT6 1004 aa13.23□□□□□ -0.29
PTCD3-207ENST00000467273 NPM1P06748 294 aaKnown RBP eCLIP13.18□□□□□ -0.3
PTCD3-207ENST00000467273 PLSCR2Q9NRY7 297 aa13.16□□□□□ -0.3
PTCD3-207ENST00000467273 MNX1P50219 401 aaPredicted RBP13.1□□□□□ -0.31
PTCD3-207ENST00000467273 OTUD5Q96G74 571 aa13.1□□□□□ -0.31
PTCD3-207ENST00000467273 POTEB2H3BUK9 544 aa13.08□□□□□ -0.32
PTCD3-207ENST00000467273 PELP1Q8IZL8 1130 aaKnown RBP13.04□□□□□ -0.32
PTCD3-207ENST00000467273 MS4A3Q96HJ5 214 aa13.03□□□□□ -0.32
PTCD3-207ENST00000467273 TSPYL2Q9H2G4 693 aaPredicted RBP12.98□□□□□ -0.33
PTCD3-207ENST00000467273 ABCC9O60706 1549 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms