RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 ARHGAP23Q9P227 1491 aa17.75■□□□□ 0.43
SHROOM3-202ENST00000466541 RIMS2Q9UQ26 1411 aa17.74■□□□□ 0.43
SHROOM3-202ENST00000466541 ZNF335Q9H4Z2 1342 aaPredicted RBP17.73■□□□□ 0.43
SHROOM3-202ENST00000466541 ILDR1Q86SU0 546 aaPredicted RBP17.73■□□□□ 0.43
SHROOM3-202ENST00000466541 HRCP23327 699 aa17.72■□□□□ 0.43
SHROOM3-202ENST00000466541 HDGFP51858 240 aaKnown RBP17.72■□□□□ 0.43
SHROOM3-202ENST00000466541 MED14O60244 1454 aa17.7■□□□□ 0.42
SHROOM3-202ENST00000466541 RGL3Q3MIN7 710 aa17.7■□□□□ 0.42
SHROOM3-202ENST00000466541 SLC26A8Q96RN1 970 aa17.7■□□□□ 0.42
SHROOM3-202ENST00000466541 CCDC144AA2RUR9 1427 aa17.7■□□□□ 0.42
SHROOM3-202ENST00000466541 ZFYVE9O95405 1425 aa17.68■□□□□ 0.42
SHROOM3-202ENST00000466541 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.68■□□□□ 0.42
SHROOM3-202ENST00000466541 CERKQ8TCT0 537 aa17.67■□□□□ 0.42
SHROOM3-202ENST00000466541 PCGF6Q9BYE7 350 aa17.63■□□□□ 0.41
SHROOM3-202ENST00000466541 PLEKHG1Q9ULL1 1385 aa17.63■□□□□ 0.41
SHROOM3-202ENST00000466541 LTBP4Q8N2S1 1624 aa17.62■□□□□ 0.41
SHROOM3-202ENST00000466541 ANKRD30BQ9BXX2 1392 aa17.61■□□□□ 0.41
SHROOM3-202ENST00000466541 NEXMIFQ5QGS0 1516 aa17.61■□□□□ 0.41
SHROOM3-202ENST00000466541 STRCP1A6NGW2 1772 aa17.61■□□□□ 0.41
SHROOM3-202ENST00000466541 PPLO60437 1756 aa17.58■□□□□ 0.41
SHROOM3-202ENST00000466541 VGFO15240 615 aaPredicted RBP17.58■□□□□ 0.4
SHROOM3-202ENST00000466541 SPATA31E1Q6ZUB1 1445 aa17.57■□□□□ 0.4
SHROOM3-202ENST00000466541 RPGRIP1LQ68CZ1 1315 aa17.57■□□□□ 0.4
SHROOM3-202ENST00000466541 RBM33Q96EV2 1170 aaKnown RBP17.56■□□□□ 0.4
SHROOM3-202ENST00000466541 TBX22Q9Y458 520 aa17.55■□□□□ 0.4
SHROOM3-202ENST00000466541 CPS1P31327 1500 aa17.55■□□□□ 0.4
SHROOM3-202ENST00000466541 ADAMTS13Q76LX8 1427 aa17.55■□□□□ 0.4
SHROOM3-202ENST00000466541 KCNA6P17658 529 aa17.54■□□□□ 0.4
SHROOM3-202ENST00000466541 PROSER2Q86WR7 435 aaPredicted RBP17.54■□□□□ 0.4
SHROOM3-202ENST00000466541 KDM2AQ9Y2K7 1162 aa17.54■□□□□ 0.4
SHROOM3-202ENST00000466541 ADGRF5Q8IZF2 1346 aa17.53■□□□□ 0.4
SHROOM3-202ENST00000466541 NRXN3Q9Y4C0 1643 aa17.53■□□□□ 0.4
SHROOM3-202ENST00000466541 CHD2O14647 1828 aaKnown RBP17.52■□□□□ 0.4
SHROOM3-202ENST00000466541 NEUROD1Q13562 356 aa17.52■□□□□ 0.4
SHROOM3-202ENST00000466541 IFT172Q9UG01 1749 aa17.52■□□□□ 0.39
SHROOM3-202ENST00000466541 FBXO41Q8TF61 875 aa17.51■□□□□ 0.39
SHROOM3-202ENST00000466541 SIN3AQ96ST3 1273 aa17.51■□□□□ 0.39
SHROOM3-202ENST00000466541 SETBP1Q9Y6X0 1596 aa17.51■□□□□ 0.39
SHROOM3-202ENST00000466541 DIP2AQ14689 1571 aa17.5■□□□□ 0.39
SHROOM3-202ENST00000466541 UBAP1LF5GYI3 381 aa17.5■□□□□ 0.39
SHROOM3-202ENST00000466541 DCAF11Q8TEB1 546 aa17.5■□□□□ 0.39
SHROOM3-202ENST00000466541 LRRC7Q96NW7 1537 aa17.5■□□□□ 0.39
SHROOM3-202ENST00000466541 METP08581 1390 aa17.5■□□□□ 0.39
SHROOM3-202ENST00000466541 DHX57Q6P158 1386 aaKnown RBP17.5■□□□□ 0.39
SHROOM3-202ENST00000466541 AMOTL2Q9Y2J4 779 aa17.49■□□□□ 0.39
SHROOM3-202ENST00000466541 SCAF1Q9H7N4 1312 aaKnown RBP17.48■□□□□ 0.39
SHROOM3-202ENST00000466541 ALKQ9UM73 1620 aa17.48■□□□□ 0.39
SHROOM3-202ENST00000466541 C14orf37Q86TY3 774 aa17.47■□□□□ 0.39
SHROOM3-202ENST00000466541 XIRP1Q702N8 1843 aaKnown RBP17.47■□□□□ 0.39
SHROOM3-202ENST00000466541 PTPRUQ92729 1446 aa17.47■□□□□ 0.39
SHROOM3-202ENST00000466541 TMEM94Q12767 1356 aa17.46■□□□□ 0.39
SHROOM3-202ENST00000466541 NWD1Q149M9 1564 aa17.45■□□□□ 0.38
SHROOM3-202ENST00000466541 PIP4K2BP78356 416 aa17.45■□□□□ 0.38
SHROOM3-202ENST00000466541 IQSEC2Q5JU85 1478 aa17.44■□□□□ 0.38
SHROOM3-202ENST00000466541 PIK3R4Q99570 1358 aa17.44■□□□□ 0.38
SHROOM3-202ENST00000466541 TMEM132EQ6IEE7 984 aa17.44■□□□□ 0.38
SHROOM3-202ENST00000466541 STK26Q9P289 416 aa17.44■□□□□ 0.38
SHROOM3-202ENST00000466541 SETD1AO15047 1707 aaKnown RBP17.43■□□□□ 0.38
SHROOM3-202ENST00000466541 NKTRP30414 1462 aaKnown RBP17.43■□□□□ 0.38
SHROOM3-202ENST00000466541 TOM1O60784 492 aa17.42■□□□□ 0.38
SHROOM3-202ENST00000466541 CFAP70Q5T0N1 1121 aa17.42■□□□□ 0.38
SHROOM3-202ENST00000466541 PIK3C2GO75747 1445 aa17.41■□□□□ 0.38
SHROOM3-202ENST00000466541 MYOM2P54296 1465 aa17.4■□□□□ 0.38
SHROOM3-202ENST00000466541 XRN1Q8IZH2 1706 aaKnown RBP17.39■□□□□ 0.37
SHROOM3-202ENST00000466541 C14orf93Q9H972 538 aaKnown RBP17.38■□□□□ 0.37
SHROOM3-202ENST00000466541 MSH6P52701 1360 aa17.38■□□□□ 0.37
SHROOM3-202ENST00000466541 L3MBTL2Q969R5 705 aa17.37■□□□□ 0.37
SHROOM3-202ENST00000466541 NRXN1Q9ULB1 1477 aa17.37■□□□□ 0.37
SHROOM3-202ENST00000466541 ROBO2Q9HCK4 1378 aa17.35■□□□□ 0.37
SHROOM3-202ENST00000466541 ATF3P18847 181 aa17.34■□□□□ 0.37
SHROOM3-202ENST00000466541 LAMC1P11047 1609 aa17.33■□□□□ 0.37
SHROOM3-202ENST00000466541 ASXL1Q8IXJ9 1541 aa17.33■□□□□ 0.37
SHROOM3-202ENST00000466541 WAPLQ7Z5K2 1190 aa17.33■□□□□ 0.36
SHROOM3-202ENST00000466541 STAC3Q96MF2 364 aa17.33■□□□□ 0.36
SHROOM3-202ENST00000466541 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.33■□□□□ 0.36
SHROOM3-202ENST00000466541 YTHDC2Q9H6S0 1430 aaKnown RBP17.32■□□□□ 0.36
SHROOM3-202ENST00000466541 SAFB2Q14151 953 aaKnown RBP eCLIP17.32■□□□□ 0.36
SHROOM3-202ENST00000466541 CCER1Q8TC90 406 aaPredicted RBP17.32■□□□□ 0.36
SHROOM3-202ENST00000466541 C19orf44Q9H6X5 657 aa17.32■□□□□ 0.36
SHROOM3-202ENST00000466541 LRPPRCP42704 1394 aaKnown RBP17.31■□□□□ 0.36
SHROOM3-202ENST00000466541 TONSLQ96HA7 1378 aa17.31■□□□□ 0.36
SHROOM3-202ENST00000466541 TRAK1Q9UPV9 953 aa17.31■□□□□ 0.36
SHROOM3-202ENST00000466541 PTCH1Q13635 1447 aa17.3■□□□□ 0.36
SHROOM3-202ENST00000466541 SLAIN2Q9P270 581 aa17.29■□□□□ 0.36
SHROOM3-202ENST00000466541 NALCNQ8IZF0 1738 aa17.29■□□□□ 0.36
SHROOM3-202ENST00000466541 NCOA3Q9Y6Q9 1424 aa17.29■□□□□ 0.36
SHROOM3-202ENST00000466541 PLEKHH1Q9ULM0 1364 aa17.28■□□□□ 0.36
SHROOM3-202ENST00000466541 NBPF1Q3BBV0 1214 aa17.28■□□□□ 0.36
SHROOM3-202ENST00000466541 CADPS2Q86UW7 1296 aa17.28■□□□□ 0.36
SHROOM3-202ENST00000466541 POGKQ9P215 609 aa17.28■□□□□ 0.36
SHROOM3-202ENST00000466541 PRAG1Q86YV5 1406 aa17.28■□□□□ 0.36
SHROOM3-202ENST00000466541 ABCC11Q96J66 1382 aa17.28■□□□□ 0.36
SHROOM3-202ENST00000466541 PRAM1Q96QH2 718 aa17.27■□□□□ 0.36
SHROOM3-202ENST00000466541 KNDC1Q76NI1 1749 aa17.27■□□□□ 0.35
SHROOM3-202ENST00000466541 HSPA1LP34931 641 aa17.26■□□□□ 0.35
SHROOM3-202ENST00000466541 ADGRL3Q9HAR2 1447 aa17.26■□□□□ 0.35
SHROOM3-202ENST00000466541 ADGRB1O14514 1584 aa17.25■□□□□ 0.35
SHROOM3-202ENST00000466541 ROBO1Q9Y6N7 1651 aa17.25■□□□□ 0.35
SHROOM3-202ENST00000466541 NUTM2FA1L443 756 aa17.24■□□□□ 0.35
SHROOM3-202ENST00000466541 TECPR2O15040 1411 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms