RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 PPP1R15AO75807 674 aaPredicted RBP25.26■■□□□ 1.63
VPS52-215ENST00000464425 HDGFP51858 240 aaKnown RBP25.26■■□□□ 1.63
VPS52-215ENST00000464425 BCANQ96GW7 911 aa25.26■■□□□ 1.63
VPS52-215ENST00000464425 RIMS2Q9UQ26 1411 aa25.26■■□□□ 1.63
VPS52-215ENST00000464425 TRPM2O94759 1503 aa25.24■■□□□ 1.63
VPS52-215ENST00000464425 ZNF326Q5BKZ1 582 aaKnown RBP25.24■■□□□ 1.63
VPS52-215ENST00000464425 ZFYVE9O95405 1425 aa25.23■■□□□ 1.63
VPS52-215ENST00000464425 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.22■■□□□ 1.63
VPS52-215ENST00000464425 SLC26A8Q96RN1 970 aa25.22■■□□□ 1.63
VPS52-215ENST00000464425 CLTCL1P53675 1640 aa25.22■■□□□ 1.63
VPS52-215ENST00000464425 FBXO41Q8TF61 875 aa25.21■■□□□ 1.63
VPS52-215ENST00000464425 HRCP23327 699 aa25.18■■□□□ 1.62
VPS52-215ENST00000464425 PLEKHG1Q9ULL1 1385 aa25.16■■□□□ 1.62
VPS52-215ENST00000464425 CCDC144AA2RUR9 1427 aa25.12■■□□□ 1.61
VPS52-215ENST00000464425 KIF1BO60333 1816 aa25.11■■□□□ 1.61
VPS52-215ENST00000464425 CPS1P31327 1500 aa25.11■■□□□ 1.61
VPS52-215ENST00000464425 RGL3Q3MIN7 710 aa25.08■■□□□ 1.61
VPS52-215ENST00000464425 STRCP1A6NGW2 1772 aa25.08■■□□□ 1.6
VPS52-215ENST00000464425 KCNA6P17658 529 aa25.07■■□□□ 1.6
VPS52-215ENST00000464425 TBX22Q9Y458 520 aa25.07■■□□□ 1.6
VPS52-215ENST00000464425 IQSEC2Q5JU85 1478 aa25.06■■□□□ 1.6
VPS52-215ENST00000464425 ADAMTS13Q76LX8 1427 aa25.04■■□□□ 1.6
VPS52-215ENST00000464425 NEXMIFQ5QGS0 1516 aa25.04■■□□□ 1.6
VPS52-215ENST00000464425 RPGRIP1LQ68CZ1 1315 aa25.04■■□□□ 1.6
VPS52-215ENST00000464425 UBAP1LF5GYI3 381 aa25.03■■□□□ 1.6
VPS52-215ENST00000464425 LRRC7Q96NW7 1537 aa25.02■■□□□ 1.6
VPS52-215ENST00000464425 VGFO15240 615 aaPredicted RBP25.02■■□□□ 1.6
VPS52-215ENST00000464425 ANKRD30BQ9BXX2 1392 aa25.01■■□□□ 1.59
VPS52-215ENST00000464425 RBM33Q96EV2 1170 aaKnown RBP25■■□□□ 1.59
VPS52-215ENST00000464425 SPATA31E1Q6ZUB1 1445 aa25■■□□□ 1.59
VPS52-215ENST00000464425 PROSER2Q86WR7 435 aaPredicted RBP24.99■■□□□ 1.59
VPS52-215ENST00000464425 SETBP1Q9Y6X0 1596 aa24.95■■□□□ 1.58
VPS52-215ENST00000464425 TMEM94Q12767 1356 aa24.94■■□□□ 1.58
VPS52-215ENST00000464425 DIP2AQ14689 1571 aa24.94■■□□□ 1.58
VPS52-215ENST00000464425 PCGF6Q9BYE7 350 aa24.94■■□□□ 1.58
VPS52-215ENST00000464425 AMOTL2Q9Y2J4 779 aa24.94■■□□□ 1.58
VPS52-215ENST00000464425 NRXN3Q9Y4C0 1643 aa24.94■■□□□ 1.58
VPS52-215ENST00000464425 TOM1O60784 492 aa24.93■■□□□ 1.58
VPS52-215ENST00000464425 METP08581 1390 aa24.93■■□□□ 1.58
VPS52-215ENST00000464425 PIK3R4Q99570 1358 aa24.93■■□□□ 1.58
VPS52-215ENST00000464425 ADGRF5Q8IZF2 1346 aa24.92■■□□□ 1.58
VPS52-215ENST00000464425 PIP4K2BP78356 416 aa24.92■■□□□ 1.58
VPS52-215ENST00000464425 NWD1Q149M9 1564 aa24.92■■□□□ 1.58
VPS52-215ENST00000464425 CHD2O14647 1828 aaKnown RBP24.91■■□□□ 1.58
VPS52-215ENST00000464425 SCAF1Q9H7N4 1312 aaKnown RBP24.91■■□□□ 1.58
VPS52-215ENST00000464425 PPLO60437 1756 aa24.91■■□□□ 1.58
VPS52-215ENST00000464425 PTPRUQ92729 1446 aa24.91■■□□□ 1.58
VPS52-215ENST00000464425 NKTRP30414 1462 aaKnown RBP24.89■■□□□ 1.58
VPS52-215ENST00000464425 XIRP1Q702N8 1843 aaKnown RBP24.86■■□□□ 1.57
VPS52-215ENST00000464425 C14orf37Q86TY3 774 aa24.85■■□□□ 1.57
VPS52-215ENST00000464425 ALKQ9UM73 1620 aa24.84■■□□□ 1.57
VPS52-215ENST00000464425 KDM2AQ9Y2K7 1162 aa24.82■■□□□ 1.56
VPS52-215ENST00000464425 IFT172Q9UG01 1749 aa24.81■■□□□ 1.56
VPS52-215ENST00000464425 DCAF11Q8TEB1 546 aa24.8■■□□□ 1.56
VPS52-215ENST00000464425 MSH6P52701 1360 aa24.8■■□□□ 1.56
VPS52-215ENST00000464425 PIK3C2GO75747 1445 aa24.78■■□□□ 1.56
VPS52-215ENST00000464425 TMEM132EQ6IEE7 984 aa24.77■■□□□ 1.56
VPS52-215ENST00000464425 SETD1AO15047 1707 aaKnown RBP24.76■■□□□ 1.55
VPS52-215ENST00000464425 XRN1Q8IZH2 1706 aaKnown RBP24.76■■□□□ 1.55
VPS52-215ENST00000464425 CFAP70Q5T0N1 1121 aa24.75■■□□□ 1.55
VPS52-215ENST00000464425 C19orf44Q9H6X5 657 aa24.75■■□□□ 1.55
VPS52-215ENST00000464425 C14orf93Q9H972 538 aaKnown RBP24.75■■□□□ 1.55
VPS52-215ENST00000464425 STK26Q9P289 416 aa24.75■■□□□ 1.55
VPS52-215ENST00000464425 DHX57Q6P158 1386 aaKnown RBP24.75■■□□□ 1.55
VPS52-215ENST00000464425 NCOA3Q9Y6Q9 1424 aa24.75■■□□□ 1.55
VPS52-215ENST00000464425 MYOM2P54296 1465 aa24.75■■□□□ 1.55
VPS52-215ENST00000464425 SIN3AQ96ST3 1273 aa24.74■■□□□ 1.55
VPS52-215ENST00000464425 NRXN1Q9ULB1 1477 aa24.72■■□□□ 1.55
VPS52-215ENST00000464425 ROBO2Q9HCK4 1378 aa24.72■■□□□ 1.55
VPS52-215ENST00000464425 HSPA1LP34931 641 aa24.72■■□□□ 1.55
VPS52-215ENST00000464425 ATF3P18847 181 aa24.71■■□□□ 1.55
VPS52-215ENST00000464425 NEUROD1Q13562 356 aa24.71■■□□□ 1.55
VPS52-215ENST00000464425 SLAIN2Q9P270 581 aa24.7■■□□□ 1.54
VPS52-215ENST00000464425 CADPS2Q86UW7 1296 aa24.68■■□□□ 1.54
VPS52-215ENST00000464425 STAC3Q96MF2 364 aa24.68■■□□□ 1.54
VPS52-215ENST00000464425 LRPPRCP42704 1394 aaKnown RBP24.67■■□□□ 1.54
VPS52-215ENST00000464425 PTCH1Q13635 1447 aa24.67■■□□□ 1.54
VPS52-215ENST00000464425 ASXL1Q8IXJ9 1541 aa24.66■■□□□ 1.54
VPS52-215ENST00000464425 WAPLQ7Z5K2 1190 aa24.65■■□□□ 1.54
VPS52-215ENST00000464425 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.65■■□□□ 1.54
VPS52-215ENST00000464425 FAM135BQ49AJ0 1406 aa24.64■■□□□ 1.54
VPS52-215ENST00000464425 YTHDC2Q9H6S0 1430 aaKnown RBP24.64■■□□□ 1.54
VPS52-215ENST00000464425 ABCC11Q96J66 1382 aa24.64■■□□□ 1.53
VPS52-215ENST00000464425 PRAG1Q86YV5 1406 aa24.62■■□□□ 1.53
VPS52-215ENST00000464425 ADGRL3Q9HAR2 1447 aa24.62■■□□□ 1.53
VPS52-215ENST00000464425 L3MBTL2Q969R5 705 aa24.62■■□□□ 1.53
VPS52-215ENST00000464425 TECPR2O15040 1411 aa24.6■■□□□ 1.53
VPS52-215ENST00000464425 PLEKHH1Q9ULM0 1364 aa24.59■■□□□ 1.53
VPS52-215ENST00000464425 LAMC1P11047 1609 aa24.58■■□□□ 1.53
VPS52-215ENST00000464425 DCCP43146 1447 aa24.58■■□□□ 1.53
VPS52-215ENST00000464425 ROBO1Q9Y6N7 1651 aa24.57■■□□□ 1.52
VPS52-215ENST00000464425 NALCNQ8IZF0 1738 aa24.56■■□□□ 1.52
VPS52-215ENST00000464425 TRAK1Q9UPV9 953 aa24.56■■□□□ 1.52
VPS52-215ENST00000464425 SIRT1Q96EB6 747 aa24.55■■□□□ 1.52
VPS52-215ENST00000464425 SAFB2Q14151 953 aaKnown RBP eCLIP24.54■■□□□ 1.52
VPS52-215ENST00000464425 PRAM1Q96QH2 718 aa24.54■■□□□ 1.52
VPS52-215ENST00000464425 ADGRB1O14514 1584 aa24.54■■□□□ 1.52
VPS52-215ENST00000464425 MST1RQ04912 1400 aa24.53■■□□□ 1.52
VPS52-215ENST00000464425 BRINP3Q76B58 766 aa24.53■■□□□ 1.52
VPS52-215ENST00000464425 POGKQ9P215 609 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms