RNA–Protein interactions for RNA: ENST00000463440.1

COL1A1-202, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 614 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-202ENST00000463440 SLC4A1APQ9BWU0 796 aaKnown RBP24.29■■□□□ 1.48
COL1A1-202ENST00000463440 UBAP1LF5GYI3 381 aa24.28■■□□□ 1.48
COL1A1-202ENST00000463440 PLEKHG1Q9ULL1 1385 aa24.26■■□□□ 1.47
COL1A1-202ENST00000463440 STRCP1A6NGW2 1772 aa24.26■■□□□ 1.47
COL1A1-202ENST00000463440 SLC26A8Q96RN1 970 aa24.25■■□□□ 1.47
COL1A1-202ENST00000463440 TRPM2O94759 1503 aa24.25■■□□□ 1.47
COL1A1-202ENST00000463440 ACIN1Q9UKV3 1341 aaKnown RBP24.24■■□□□ 1.47
COL1A1-202ENST00000463440 LRRC7Q96NW7 1537 aa24.22■■□□□ 1.47
COL1A1-202ENST00000463440 SETD5Q9C0A6 1442 aa24.21■■□□□ 1.47
COL1A1-202ENST00000463440 TOM1O60784 492 aa24.2■■□□□ 1.46
COL1A1-202ENST00000463440 NUTM2DQ5VT03 806 aaPredicted RBP24.2■■□□□ 1.46
COL1A1-202ENST00000463440 SENP3Q9H4L4 574 aaPredicted RBP24.2■■□□□ 1.46
COL1A1-202ENST00000463440 CLTCL1P53675 1640 aa24.2■■□□□ 1.46
COL1A1-202ENST00000463440 KCNA6P17658 529 aa24.19■■□□□ 1.46
COL1A1-202ENST00000463440 ZNF326Q5BKZ1 582 aaKnown RBP24.19■■□□□ 1.46
COL1A1-202ENST00000463440 MPHOSPH9Q99550 1183 aa24.16■■□□□ 1.46
COL1A1-202ENST00000463440 TBX22Q9Y458 520 aa24.16■■□□□ 1.46
COL1A1-202ENST00000463440 KIF1BO60333 1816 aa24.15■■□□□ 1.46
COL1A1-202ENST00000463440 SCAF1Q9H7N4 1312 aaKnown RBP24.12■■□□□ 1.45
COL1A1-202ENST00000463440 FOXD1Q16676 465 aa24.12■■□□□ 1.45
COL1A1-202ENST00000463440 DIP2AQ14689 1571 aa24.12■■□□□ 1.45
COL1A1-202ENST00000463440 PIP4K2BP78356 416 aa24.11■■□□□ 1.45
COL1A1-202ENST00000463440 PROSER2Q86WR7 435 aaPredicted RBP24.11■■□□□ 1.45
COL1A1-202ENST00000463440 RAB3GAP2Q9H2M9 1393 aa24.11■■□□□ 1.45
COL1A1-202ENST00000463440 NKTRP30414 1462 aaKnown RBP24.11■■□□□ 1.45
COL1A1-202ENST00000463440 NWD1Q149M9 1564 aa24.11■■□□□ 1.45
COL1A1-202ENST00000463440 ADAMTS13Q76LX8 1427 aa24.1■■□□□ 1.45
COL1A1-202ENST00000463440 TMEM94Q12767 1356 aa24.08■■□□□ 1.45
COL1A1-202ENST00000463440 CHD2O14647 1828 aaKnown RBP24.07■■□□□ 1.44
COL1A1-202ENST00000463440 PIK3R4Q99570 1358 aa24.07■■□□□ 1.44
COL1A1-202ENST00000463440 NEXMIFQ5QGS0 1516 aa24.07■■□□□ 1.44
COL1A1-202ENST00000463440 XIRP1Q702N8 1843 aaKnown RBP24.07■■□□□ 1.44
COL1A1-202ENST00000463440 CCDC144AA2RUR9 1427 aa24.06■■□□□ 1.44
COL1A1-202ENST00000463440 RPGRIP1LQ68CZ1 1315 aa24.05■■□□□ 1.44
COL1A1-202ENST00000463440 SETBP1Q9Y6X0 1596 aa24.04■■□□□ 1.44
COL1A1-202ENST00000463440 ALKQ9UM73 1620 aa24.04■■□□□ 1.44
COL1A1-202ENST00000463440 VGFO15240 615 aaPredicted RBP24.03■■□□□ 1.44
COL1A1-202ENST00000463440 RBM33Q96EV2 1170 aaKnown RBP24.01■■□□□ 1.43
COL1A1-202ENST00000463440 NRXN3Q9Y4C0 1643 aa24.01■■□□□ 1.43
COL1A1-202ENST00000463440 HRCP23327 699 aa24■■□□□ 1.43
COL1A1-202ENST00000463440 AMOTL2Q9Y2J4 779 aa23.98■■□□□ 1.43
COL1A1-202ENST00000463440 MSH6P52701 1360 aa23.98■■□□□ 1.43
COL1A1-202ENST00000463440 HSPA1LP34931 641 aa23.97■■□□□ 1.43
COL1A1-202ENST00000463440 NCOA3Q9Y6Q9 1424 aa23.96■■□□□ 1.43
COL1A1-202ENST00000463440 PTPRUQ92729 1446 aa23.95■■□□□ 1.42
COL1A1-202ENST00000463440 RGL3Q3MIN7 710 aa23.95■■□□□ 1.42
COL1A1-202ENST00000463440 PPLO60437 1756 aa23.95■■□□□ 1.42
COL1A1-202ENST00000463440 SPATA31E1Q6ZUB1 1445 aa23.94■■□□□ 1.42
COL1A1-202ENST00000463440 METP08581 1390 aa23.94■■□□□ 1.42
COL1A1-202ENST00000463440 C14orf37Q86TY3 774 aa23.94■■□□□ 1.42
COL1A1-202ENST00000463440 ANKRD30BQ9BXX2 1392 aa23.91■■□□□ 1.42
COL1A1-202ENST00000463440 XRN1Q8IZH2 1706 aaKnown RBP23.9■■□□□ 1.42
COL1A1-202ENST00000463440 FAM135BQ49AJ0 1406 aa23.89■■□□□ 1.41
COL1A1-202ENST00000463440 C19orf44Q9H6X5 657 aa23.87■■□□□ 1.41
COL1A1-202ENST00000463440 SLAIN2Q9P270 581 aa23.86■■□□□ 1.41
COL1A1-202ENST00000463440 ADGRF5Q8IZF2 1346 aa23.85■■□□□ 1.41
COL1A1-202ENST00000463440 SETD1AO15047 1707 aaKnown RBP23.84■■□□□ 1.41
COL1A1-202ENST00000463440 IFT172Q9UG01 1749 aa23.84■■□□□ 1.41
COL1A1-202ENST00000463440 ATF3P18847 181 aa23.84■■□□□ 1.41
COL1A1-202ENST00000463440 CADPS2Q86UW7 1296 aa23.84■■□□□ 1.41
COL1A1-202ENST00000463440 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.82■■□□□ 1.4
COL1A1-202ENST00000463440 DISP3Q9P2K9 1392 aa23.82■■□□□ 1.4
COL1A1-202ENST00000463440 ROBO1Q9Y6N7 1651 aa23.82■■□□□ 1.4
COL1A1-202ENST00000463440 DCCP43146 1447 aa23.79■■□□□ 1.4
COL1A1-202ENST00000463440 PTCH1Q13635 1447 aa23.79■■□□□ 1.4
COL1A1-202ENST00000463440 PIK3C2GO75747 1445 aa23.77■■□□□ 1.4
COL1A1-202ENST00000463440 PRAG1Q86YV5 1406 aa23.76■■□□□ 1.39
COL1A1-202ENST00000463440 ADGRL3Q9HAR2 1447 aa23.76■■□□□ 1.39
COL1A1-202ENST00000463440 MYOM2P54296 1465 aa23.75■■□□□ 1.39
COL1A1-202ENST00000463440 ROBO2Q9HCK4 1378 aa23.75■■□□□ 1.39
COL1A1-202ENST00000463440 NRXN1Q9ULB1 1477 aa23.72■■□□□ 1.39
COL1A1-202ENST00000463440 C14orf93Q9H972 538 aaKnown RBP23.71■■□□□ 1.39
COL1A1-202ENST00000463440 NALCNQ8IZF0 1738 aa23.7■■□□□ 1.39
COL1A1-202ENST00000463440 LRPPRCP42704 1394 aaKnown RBP23.7■■□□□ 1.38
COL1A1-202ENST00000463440 STK26Q9P289 416 aa23.7■■□□□ 1.38
COL1A1-202ENST00000463440 MED1Q15648 1581 aaPredicted RBP23.69■■□□□ 1.38
COL1A1-202ENST00000463440 TMEM132EQ6IEE7 984 aa23.69■■□□□ 1.38
COL1A1-202ENST00000463440 PHLPP1O60346 1717 aa23.68■■□□□ 1.38
COL1A1-202ENST00000463440 STAC3Q96MF2 364 aa23.68■■□□□ 1.38
COL1A1-202ENST00000463440 LAMC1P11047 1609 aa23.68■■□□□ 1.38
COL1A1-202ENST00000463440 TECPR2O15040 1411 aa23.67■■□□□ 1.38
COL1A1-202ENST00000463440 MST1RQ04912 1400 aa23.67■■□□□ 1.38
COL1A1-202ENST00000463440 ABCC11Q96J66 1382 aa23.67■■□□□ 1.38
COL1A1-202ENST00000463440 CFAP70Q5T0N1 1121 aa23.67■■□□□ 1.38
COL1A1-202ENST00000463440 DCAF11Q8TEB1 546 aa23.67■■□□□ 1.38
COL1A1-202ENST00000463440 ASXL1Q8IXJ9 1541 aa23.67■■□□□ 1.38
COL1A1-202ENST00000463440 BRINP3Q76B58 766 aa23.66■■□□□ 1.38
COL1A1-202ENST00000463440 KDM2AQ9Y2K7 1162 aa23.66■■□□□ 1.38
COL1A1-202ENST00000463440 YTHDC2Q9H6S0 1430 aaKnown RBP23.66■■□□□ 1.38
COL1A1-202ENST00000463440 DHX57Q6P158 1386 aaKnown RBP23.65■■□□□ 1.38
COL1A1-202ENST00000463440 KNDC1Q76NI1 1749 aa23.64■■□□□ 1.37
COL1A1-202ENST00000463440 AHDC1Q5TGY3 1603 aaPredicted RBP23.62■■□□□ 1.37
COL1A1-202ENST00000463440 WAPLQ7Z5K2 1190 aa23.61■■□□□ 1.37
COL1A1-202ENST00000463440 COL16A1Q07092 1604 aaPredicted RBP23.6■■□□□ 1.37
COL1A1-202ENST00000463440 SIRT1Q96EB6 747 aa23.6■■□□□ 1.37
COL1A1-202ENST00000463440 PHF23Q9BUL5 403 aaPredicted RBP23.6■■□□□ 1.37
COL1A1-202ENST00000463440 JCADQ9P266 1359 aa23.6■■□□□ 1.37
COL1A1-202ENST00000463440 C1orf167Q5SNV9 1468 aa23.6■■□□□ 1.37
COL1A1-202ENST00000463440 TRIM26Q12899 539 aaPredicted RBP23.59■■□□□ 1.37
COL1A1-202ENST00000463440 CDC42BPGQ6DT37 1551 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms