RNA–Protein interactions for RNA: ENST00000463066.1

HLA-DPA1-245, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 580 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-245ENST00000463066 ZNF335Q9H4Z2 1342 aaPredicted RBP24.59■■□□□ 1.53
HLA-DPA1-245ENST00000463066 ZNF326Q5BKZ1 582 aaKnown RBP24.58■■□□□ 1.53
HLA-DPA1-245ENST00000463066 CCDC144AA2RUR9 1427 aa24.57■■□□□ 1.52
HLA-DPA1-245ENST00000463066 IQGAP1P46940 1657 aa24.56■■□□□ 1.52
HLA-DPA1-245ENST00000463066 PPP1R15AO75807 674 aaPredicted RBP24.55■■□□□ 1.52
HLA-DPA1-245ENST00000463066 ANKRD30BQ9BXX2 1392 aa24.54■■□□□ 1.52
HLA-DPA1-245ENST00000463066 SLC26A8Q96RN1 970 aa24.53■■□□□ 1.52
HLA-DPA1-245ENST00000463066 BCANQ96GW7 911 aa24.51■■□□□ 1.51
HLA-DPA1-245ENST00000463066 RGL3Q3MIN7 710 aa24.5■■□□□ 1.51
HLA-DPA1-245ENST00000463066 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.5■■□□□ 1.51
HLA-DPA1-245ENST00000463066 PLEKHG1Q9ULL1 1385 aa24.5■■□□□ 1.51
HLA-DPA1-245ENST00000463066 SPATA31E1Q6ZUB1 1445 aa24.5■■□□□ 1.51
HLA-DPA1-245ENST00000463066 LTBP4Q8N2S1 1624 aa24.5■■□□□ 1.51
HLA-DPA1-245ENST00000463066 KIF1BO60333 1816 aa24.49■■□□□ 1.51
HLA-DPA1-245ENST00000463066 PCGF6Q9BYE7 350 aa24.49■■□□□ 1.51
HLA-DPA1-245ENST00000463066 NEXMIFQ5QGS0 1516 aa24.49■■□□□ 1.51
HLA-DPA1-245ENST00000463066 HDGFP51858 240 aaKnown RBP24.48■■□□□ 1.51
HLA-DPA1-245ENST00000463066 CERKQ8TCT0 537 aa24.44■■□□□ 1.5
HLA-DPA1-245ENST00000463066 ADAMTS13Q76LX8 1427 aa24.44■■□□□ 1.5
HLA-DPA1-245ENST00000463066 DHX57Q6P158 1386 aaKnown RBP24.43■■□□□ 1.5
HLA-DPA1-245ENST00000463066 RPGRIP1LQ68CZ1 1315 aa24.4■■□□□ 1.5
HLA-DPA1-245ENST00000463066 ADGRF5Q8IZF2 1346 aa24.38■■□□□ 1.49
HLA-DPA1-245ENST00000463066 STRCP1A6NGW2 1772 aa24.38■■□□□ 1.49
HLA-DPA1-245ENST00000463066 NRXN3Q9Y4C0 1643 aa24.38■■□□□ 1.49
HLA-DPA1-245ENST00000463066 TBX22Q9Y458 520 aa24.37■■□□□ 1.49
HLA-DPA1-245ENST00000463066 VGFO15240 615 aaPredicted RBP24.36■■□□□ 1.49
HLA-DPA1-245ENST00000463066 PPLO60437 1756 aa24.35■■□□□ 1.49
HLA-DPA1-245ENST00000463066 SIN3AQ96ST3 1273 aa24.35■■□□□ 1.49
HLA-DPA1-245ENST00000463066 SETBP1Q9Y6X0 1596 aa24.34■■□□□ 1.49
HLA-DPA1-245ENST00000463066 KCNA6P17658 529 aa24.33■■□□□ 1.49
HLA-DPA1-245ENST00000463066 CPS1P31327 1500 aa24.32■■□□□ 1.48
HLA-DPA1-245ENST00000463066 METP08581 1390 aa24.31■■□□□ 1.48
HLA-DPA1-245ENST00000463066 PTPRUQ92729 1446 aa24.31■■□□□ 1.48
HLA-DPA1-245ENST00000463066 RBM33Q96EV2 1170 aaKnown RBP24.31■■□□□ 1.48
HLA-DPA1-245ENST00000463066 IFT172Q9UG01 1749 aa24.3■■□□□ 1.48
HLA-DPA1-245ENST00000463066 LRRC7Q96NW7 1537 aa24.3■■□□□ 1.48
HLA-DPA1-245ENST00000463066 DIP2AQ14689 1571 aa24.29■■□□□ 1.48
HLA-DPA1-245ENST00000463066 KDM2AQ9Y2K7 1162 aa24.28■■□□□ 1.48
HLA-DPA1-245ENST00000463066 NEUROD1Q13562 356 aa24.27■■□□□ 1.48
HLA-DPA1-245ENST00000463066 NWD1Q149M9 1564 aa24.27■■□□□ 1.48
HLA-DPA1-245ENST00000463066 DCAF11Q8TEB1 546 aa24.26■■□□□ 1.47
HLA-DPA1-245ENST00000463066 ALKQ9UM73 1620 aa24.25■■□□□ 1.47
HLA-DPA1-245ENST00000463066 AMOTL2Q9Y2J4 779 aa24.25■■□□□ 1.47
HLA-DPA1-245ENST00000463066 PROSER2Q86WR7 435 aaPredicted RBP24.24■■□□□ 1.47
HLA-DPA1-245ENST00000463066 PIK3R4Q99570 1358 aa24.24■■□□□ 1.47
HLA-DPA1-245ENST00000463066 MYOM2P54296 1465 aa24.24■■□□□ 1.47
HLA-DPA1-245ENST00000463066 TMEM94Q12767 1356 aa24.23■■□□□ 1.47
HLA-DPA1-245ENST00000463066 PIK3C2GO75747 1445 aa24.23■■□□□ 1.47
HLA-DPA1-245ENST00000463066 CHD2O14647 1828 aaKnown RBP24.22■■□□□ 1.47
HLA-DPA1-245ENST00000463066 NRXN1Q9ULB1 1477 aa24.22■■□□□ 1.47
HLA-DPA1-245ENST00000463066 SETD1AO15047 1707 aaKnown RBP24.21■■□□□ 1.47
HLA-DPA1-245ENST00000463066 NKTRP30414 1462 aaKnown RBP24.2■■□□□ 1.47
HLA-DPA1-245ENST00000463066 IQSEC2Q5JU85 1478 aa24.2■■□□□ 1.47
HLA-DPA1-245ENST00000463066 CFAP70Q5T0N1 1121 aa24.2■■□□□ 1.46
HLA-DPA1-245ENST00000463066 ILDR1Q86SU0 546 aaPredicted RBP24.2■■□□□ 1.46
HLA-DPA1-245ENST00000463066 FBXO41Q8TF61 875 aa24.2■■□□□ 1.46
HLA-DPA1-245ENST00000463066 TMEM132EQ6IEE7 984 aa24.19■■□□□ 1.46
HLA-DPA1-245ENST00000463066 ASXL1Q8IXJ9 1541 aa24.18■■□□□ 1.46
HLA-DPA1-245ENST00000463066 UBAP1LF5GYI3 381 aa24.17■■□□□ 1.46
HLA-DPA1-245ENST00000463066 L3MBTL2Q969R5 705 aa24.17■■□□□ 1.46
HLA-DPA1-245ENST00000463066 C14orf93Q9H972 538 aaKnown RBP24.17■■□□□ 1.46
HLA-DPA1-245ENST00000463066 XRN1Q8IZH2 1706 aaKnown RBP24.17■■□□□ 1.46
HLA-DPA1-245ENST00000463066 XIRP1Q702N8 1843 aaKnown RBP24.15■■□□□ 1.46
HLA-DPA1-245ENST00000463066 STK26Q9P289 416 aa24.15■■□□□ 1.46
HLA-DPA1-245ENST00000463066 ROBO2Q9HCK4 1378 aa24.12■■□□□ 1.45
HLA-DPA1-245ENST00000463066 LRPPRCP42704 1394 aaKnown RBP24.09■■□□□ 1.45
HLA-DPA1-245ENST00000463066 C14orf37Q86TY3 774 aa24.08■■□□□ 1.45
HLA-DPA1-245ENST00000463066 PIP4K2BP78356 416 aa24.07■■□□□ 1.44
HLA-DPA1-245ENST00000463066 STAC3Q96MF2 364 aa24.07■■□□□ 1.44
HLA-DPA1-245ENST00000463066 YTHDC2Q9H6S0 1430 aaKnown RBP24.07■■□□□ 1.44
HLA-DPA1-245ENST00000463066 PRAG1Q86YV5 1406 aa24.06■■□□□ 1.44
HLA-DPA1-245ENST00000463066 ADGRB1O14514 1584 aa24.05■■□□□ 1.44
HLA-DPA1-245ENST00000463066 PTCH1Q13635 1447 aa24.05■■□□□ 1.44
HLA-DPA1-245ENST00000463066 TOM1O60784 492 aa24.05■■□□□ 1.44
HLA-DPA1-245ENST00000463066 WAPLQ7Z5K2 1190 aa24.04■■□□□ 1.44
HLA-DPA1-245ENST00000463066 SCAF1Q9H7N4 1312 aaKnown RBP24.04■■□□□ 1.44
HLA-DPA1-245ENST00000463066 MSH6P52701 1360 aa24.03■■□□□ 1.44
HLA-DPA1-245ENST00000463066 ABCC11Q96J66 1382 aa24.03■■□□□ 1.44
HLA-DPA1-245ENST00000463066 PLEKHH1Q9ULM0 1364 aa24.03■■□□□ 1.44
HLA-DPA1-245ENST00000463066 LAMC1P11047 1609 aa24.03■■□□□ 1.44
HLA-DPA1-245ENST00000463066 TECPR2O15040 1411 aa24.02■■□□□ 1.44
HLA-DPA1-245ENST00000463066 NBPF1Q3BBV0 1214 aa24.02■■□□□ 1.44
HLA-DPA1-245ENST00000463066 TONSLQ96HA7 1378 aa24.02■■□□□ 1.44
HLA-DPA1-245ENST00000463066 NCOA3Q9Y6Q9 1424 aa24.01■■□□□ 1.43
HLA-DPA1-245ENST00000463066 CCER1Q8TC90 406 aaPredicted RBP24.01■■□□□ 1.43
HLA-DPA1-245ENST00000463066 NBPF8Q3BBV2 869 aa24■■□□□ 1.43
HLA-DPA1-245ENST00000463066 C19orf44Q9H6X5 657 aa23.99■■□□□ 1.43
HLA-DPA1-245ENST00000463066 TRAK1Q9UPV9 953 aa23.99■■□□□ 1.43
HLA-DPA1-245ENST00000463066 ADGRL3Q9HAR2 1447 aa23.98■■□□□ 1.43
HLA-DPA1-245ENST00000463066 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.96■■□□□ 1.43
HLA-DPA1-245ENST00000463066 SAFB2Q14151 953 aaKnown RBP eCLIP23.96■■□□□ 1.43
HLA-DPA1-245ENST00000463066 KNDC1Q76NI1 1749 aa23.96■■□□□ 1.43
HLA-DPA1-245ENST00000463066 NALCNQ8IZF0 1738 aa23.96■■□□□ 1.43
HLA-DPA1-245ENST00000463066 PRAM1Q96QH2 718 aa23.95■■□□□ 1.42
HLA-DPA1-245ENST00000463066 ATF3P18847 181 aa23.94■■□□□ 1.42
HLA-DPA1-245ENST00000463066 SLAIN2Q9P270 581 aa23.93■■□□□ 1.42
HLA-DPA1-245ENST00000463066 FAM135BQ49AJ0 1406 aa23.93■■□□□ 1.42
HLA-DPA1-245ENST00000463066 CADPS2Q86UW7 1296 aa23.92■■□□□ 1.42
HLA-DPA1-245ENST00000463066 SIRT1Q96EB6 747 aa23.92■■□□□ 1.42
HLA-DPA1-245ENST00000463066 CLSPNQ9HAW4 1339 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms