RNA–Protein interactions for RNA: ENST00000462212.5

ITSN1-222, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,102 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-222	ENST00000462212	RIMS2	Q9UQ26	1411 aa		12.51	□□□□□ -0.41
ITSN1-222	ENST00000462212	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.5	□□□□□ -0.41
ITSN1-222	ENST00000462212	CLTCL1	P53675	1640 aa		12.5	□□□□□ -0.41
ITSN1-222	ENST00000462212	STRCP1	A6NGW2	1772 aa		12.5	□□□□□ -0.41
ITSN1-222	ENST00000462212	PLEKHG1	Q9ULL1	1385 aa		12.49	□□□□□ -0.41
ITSN1-222	ENST00000462212	HDGF	P51858	240 aa	Known RBP	12.48	□□□□□ -0.41
ITSN1-222	ENST00000462212	CHGA	P10645	457 aa	Known RBP	12.47	□□□□□ -0.41
ITSN1-222	ENST00000462212	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	12.47	□□□□□ -0.41
ITSN1-222	ENST00000462212	RAB3GAP2	Q9H2M9	1393 aa		12.46	□□□□□ -0.41
ITSN1-222	ENST00000462212	MPHOSPH9	Q99550	1183 aa		12.46	□□□□□ -0.41
ITSN1-222	ENST00000462212	LRRC7	Q96NW7	1537 aa		12.46	□□□□□ -0.42
ITSN1-222	ENST00000462212	KIF1B	O60333	1816 aa		12.45	□□□□□ -0.42
ITSN1-222	ENST00000462212	ADAMTS13	Q76LX8	1427 aa		12.45	□□□□□ -0.42
ITSN1-222	ENST00000462212	NWD1	Q149M9	1564 aa		12.44	□□□□□ -0.42
ITSN1-222	ENST00000462212	PPP1R15A	O75807	674 aa	Predicted RBP	12.44	□□□□□ -0.42
ITSN1-222	ENST00000462212	SLC26A8	Q96RN1	970 aa		12.44	□□□□□ -0.42
ITSN1-222	ENST00000462212	DIP2A	Q14689	1571 aa		12.43	□□□□□ -0.42
ITSN1-222	ENST00000462212	NEXMIF	Q5QGS0	1516 aa		12.43	□□□□□ -0.42
ITSN1-222	ENST00000462212	KCNA6	P17658	529 aa		12.43	□□□□□ -0.42
ITSN1-222	ENST00000462212	HRC	P23327	699 aa		12.43	□□□□□ -0.42
ITSN1-222	ENST00000462212	TBX22	Q9Y458	520 aa		12.43	□□□□□ -0.42
ITSN1-222	ENST00000462212	NUTM2D	Q5VT03	806 aa	Predicted RBP	12.42	□□□□□ -0.42
ITSN1-222	ENST00000462212	SETBP1	Q9Y6X0	1596 aa		12.42	□□□□□ -0.42
ITSN1-222	ENST00000462212	NKTR	P30414	1462 aa	Known RBP	12.41	□□□□□ -0.42
ITSN1-222	ENST00000462212	NRXN3	Q9Y4C0	1643 aa		12.41	□□□□□ -0.42
ITSN1-222	ENST00000462212	CHD2	O14647	1828 aa	Known RBP	12.41	□□□□□ -0.42
ITSN1-222	ENST00000462212	XIRP1	Q702N8	1843 aa	Known RBP	12.41	□□□□□ -0.42
ITSN1-222	ENST00000462212	PIK3R4	Q99570	1358 aa		12.41	□□□□□ -0.42
ITSN1-222	ENST00000462212	ALK	Q9UM73	1620 aa		12.4	□□□□□ -0.42
ITSN1-222	ENST00000462212	CCDC144A	A2RUR9	1427 aa		12.4	□□□□□ -0.42
ITSN1-222	ENST00000462212	UBAP1L	F5GYI3	381 aa		12.4	□□□□□ -0.42
ITSN1-222	ENST00000462212	ZNF326	Q5BKZ1	582 aa	Known RBP	12.4	□□□□□ -0.42
ITSN1-222	ENST00000462212	BCAN	Q96GW7	911 aa		12.4	□□□□□ -0.42
ITSN1-222	ENST00000462212	RPGRIP1L	Q68CZ1	1315 aa		12.39	□□□□□ -0.43
ITSN1-222	ENST00000462212	SPATA31E1	Q6ZUB1	1445 aa		12.39	□□□□□ -0.43
ITSN1-222	ENST00000462212	SOCS7	O14512	581 aa		12.37	□□□□□ -0.43
ITSN1-222	ENST00000462212	TOM1	O60784	492 aa		12.37	□□□□□ -0.43
ITSN1-222	ENST00000462212	TMEM94	Q12767	1356 aa		12.37	□□□□□ -0.43
ITSN1-222	ENST00000462212	PPL	O60437	1756 aa		12.37	□□□□□ -0.43
ITSN1-222	ENST00000462212	PTPRU	Q92729	1446 aa		12.36	□□□□□ -0.43
ITSN1-222	ENST00000462212	ANKRD30B	Q9BXX2	1392 aa		12.35	□□□□□ -0.43
ITSN1-222	ENST00000462212	VGF	O15240	615 aa	Predicted RBP	12.35	□□□□□ -0.43
ITSN1-222	ENST00000462212	PROSER2	Q86WR7	435 aa	Predicted RBP	12.35	□□□□□ -0.43
ITSN1-222	ENST00000462212	NCOA3	Q9Y6Q9	1424 aa		12.35	□□□□□ -0.43
ITSN1-222	ENST00000462212	XRN1	Q8IZH2	1706 aa	Known RBP	12.34	□□□□□ -0.43
ITSN1-222	ENST00000462212	SETD1A	O15047	1707 aa	Known RBP	12.34	□□□□□ -0.43
ITSN1-222	ENST00000462212	IFT172	Q9UG01	1749 aa		12.34	□□□□□ -0.43
ITSN1-222	ENST00000462212	MET	P08581	1390 aa		12.33	□□□□□ -0.44
ITSN1-222	ENST00000462212	AMOTL2	Q9Y2J4	779 aa		12.32	□□□□□ -0.44
ITSN1-222	ENST00000462212	PRAG1	Q86YV5	1406 aa		12.31	□□□□□ -0.44
ITSN1-222	ENST00000462212	RBM33	Q96EV2	1170 aa	Known RBP	12.31	□□□□□ -0.44
ITSN1-222	ENST00000462212	PIP4K2B	P78356	416 aa		12.3	□□□□□ -0.44
ITSN1-222	ENST00000462212	RGL3	Q3MIN7	710 aa		12.3	□□□□□ -0.44
ITSN1-222	ENST00000462212	ADGRF5	Q8IZF2	1346 aa		12.3	□□□□□ -0.44
ITSN1-222	ENST00000462212	MSH6	P52701	1360 aa		12.3	□□□□□ -0.44
ITSN1-222	ENST00000462212	NRXN1	Q9ULB1	1477 aa		12.29	□□□□□ -0.44
ITSN1-222	ENST00000462212	ILDR2	Q71H61	639 aa		12.29	□□□□□ -0.44
ITSN1-222	ENST00000462212	PIK3C2G	O75747	1445 aa		12.28	□□□□□ -0.44
ITSN1-222	ENST00000462212	FAM135B	Q49AJ0	1406 aa		12.28	□□□□□ -0.44
ITSN1-222	ENST00000462212	MYOM2	P54296	1465 aa		12.28	□□□□□ -0.44
ITSN1-222	ENST00000462212	SCAF1	Q9H7N4	1312 aa	Known RBP	12.28	□□□□□ -0.44
ITSN1-222	ENST00000462212	PTCH1	Q13635	1447 aa		12.28	□□□□□ -0.44
ITSN1-222	ENST00000462212	HSPA1L	P34931	641 aa		12.27	□□□□□ -0.45
ITSN1-222	ENST00000462212	C19orf44	Q9H6X5	657 aa		12.27	□□□□□ -0.45
ITSN1-222	ENST00000462212	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	12.26	□□□□□ -0.45
ITSN1-222	ENST00000462212	DCC	P43146	1447 aa		12.26	□□□□□ -0.45
ITSN1-222	ENST00000462212	ASXL1	Q8IXJ9	1541 aa		12.25	□□□□□ -0.45
ITSN1-222	ENST00000462212	TECPR2	O15040	1411 aa		12.24	□□□□□ -0.45
ITSN1-222	ENST00000462212	ADGRL3	Q9HAR2	1447 aa		12.24	□□□□□ -0.45
ITSN1-222	ENST00000462212	ROBO2	Q9HCK4	1378 aa		12.24	□□□□□ -0.45
ITSN1-222	ENST00000462212	DISP3	Q9P2K9	1392 aa		12.24	□□□□□ -0.45
ITSN1-222	ENST00000462212	ROBO1	Q9Y6N7	1651 aa		12.23	□□□□□ -0.45
ITSN1-222	ENST00000462212	CADPS2	Q86UW7	1296 aa		12.23	□□□□□ -0.45
ITSN1-222	ENST00000462212	SLAIN2	Q9P270	581 aa		12.23	□□□□□ -0.45
ITSN1-222	ENST00000462212	LAMC1	P11047	1609 aa		12.22	□□□□□ -0.45
ITSN1-222	ENST00000462212	LRPPRC	P42704	1394 aa	Known RBP	12.22	□□□□□ -0.45
ITSN1-222	ENST00000462212	DHX57	Q6P158	1386 aa	Known RBP	12.22	□□□□□ -0.45
ITSN1-222	ENST00000462212	C14orf37	Q86TY3	774 aa		12.22	□□□□□ -0.45
ITSN1-222	ENST00000462212	STAC3	Q96MF2	364 aa		12.22	□□□□□ -0.45
ITSN1-222	ENST00000462212	C14orf93	Q9H972	538 aa	Known RBP	12.22	□□□□□ -0.45
ITSN1-222	ENST00000462212	ABCC11	Q96J66	1382 aa		12.21	□□□□□ -0.45
ITSN1-222	ENST00000462212	KNDC1	Q76NI1	1749 aa		12.21	□□□□□ -0.45
ITSN1-222	ENST00000462212	NALCN	Q8IZF0	1738 aa		12.21	□□□□□ -0.45
ITSN1-222	ENST00000462212	ATF3	P18847	181 aa		12.21	□□□□□ -0.45
ITSN1-222	ENST00000462212	TRIM26	Q12899	539 aa	Predicted RBP	12.21	□□□□□ -0.45
ITSN1-222	ENST00000462212	MST1R	Q04912	1400 aa		12.2	□□□□□ -0.46
ITSN1-222	ENST00000462212	YTHDC2	Q9H6S0	1430 aa	Known RBP	12.2	□□□□□ -0.46
ITSN1-222	ENST00000462212	CFAP70	Q5T0N1	1121 aa		12.19	□□□□□ -0.46
ITSN1-222	ENST00000462212	TMEM132E	Q6IEE7	984 aa		12.19	□□□□□ -0.46
ITSN1-222	ENST00000462212	ADGRB1	O14514	1584 aa		12.18	□□□□□ -0.46
ITSN1-222	ENST00000462212	DCAF11	Q8TEB1	546 aa		12.18	□□□□□ -0.46
ITSN1-222	ENST00000462212	SIRT1	Q96EB6	747 aa		12.17	□□□□□ -0.46
ITSN1-222	ENST00000462212	AHDC1	Q5TGY3	1603 aa	Predicted RBP	12.16	□□□□□ -0.46
ITSN1-222	ENST00000462212	BRINP3	Q76B58	766 aa		12.16	□□□□□ -0.46
ITSN1-222	ENST00000462212	CDC42BPG	Q6DT37	1551 aa		12.16	□□□□□ -0.46
ITSN1-222	ENST00000462212	STK26	Q9P289	416 aa		12.15	□□□□□ -0.46
ITSN1-222	ENST00000462212	KDM2A	Q9Y2K7	1162 aa		12.15	□□□□□ -0.46
ITSN1-222	ENST00000462212	DLC1	Q96QB1	1528 aa		12.15	□□□□□ -0.46
ITSN1-222	ENST00000462212	PLEKHH1	Q9ULM0	1364 aa		12.15	□□□□□ -0.46
ITSN1-222	ENST00000462212	COL16A1	Q07092	1604 aa	Predicted RBP	12.15	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms