RNA–Protein interactions for RNA: ENST00000459667.1

VARS-218, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-218ENST00000459667 ACIN1Q9UKV3 1341 aaKnown RBP30.91■■■□□ 2.54
VARS-218ENST00000459667 RAB3GAP2Q9H2M9 1393 aa30.91■■■□□ 2.54
VARS-218ENST00000459667 HDGFP51858 240 aaKnown RBP30.88■■■□□ 2.53
VARS-218ENST00000459667 PPP1R15AO75807 674 aaPredicted RBP30.87■■■□□ 2.53
VARS-218ENST00000459667 MPHOSPH9Q99550 1183 aa30.86■■■□□ 2.53
VARS-218ENST00000459667 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.85■■■□□ 2.53
VARS-218ENST00000459667 KIF1BO60333 1816 aa30.84■■■□□ 2.53
VARS-218ENST00000459667 STRCP1A6NGW2 1772 aa30.84■■■□□ 2.53
VARS-218ENST00000459667 PLEKHG1Q9ULL1 1385 aa30.84■■■□□ 2.53
VARS-218ENST00000459667 FOXD1Q16676 465 aa30.84■■■□□ 2.53
VARS-218ENST00000459667 BCANQ96GW7 911 aa30.82■■■□□ 2.52
VARS-218ENST00000459667 NUTM2DQ5VT03 806 aaPredicted RBP30.8■■■□□ 2.52
VARS-218ENST00000459667 SLC26A8Q96RN1 970 aa30.8■■■□□ 2.52
VARS-218ENST00000459667 ZNF326Q5BKZ1 582 aaKnown RBP30.79■■■□□ 2.52
VARS-218ENST00000459667 SENP3Q9H4L4 574 aaPredicted RBP30.79■■■□□ 2.52
VARS-218ENST00000459667 NEXMIFQ5QGS0 1516 aa30.73■■■□□ 2.51
VARS-218ENST00000459667 LRRC7Q96NW7 1537 aa30.73■■■□□ 2.51
VARS-218ENST00000459667 CCDC144AA2RUR9 1427 aa30.73■■■□□ 2.51
VARS-218ENST00000459667 DIP2AQ14689 1571 aa30.7■■■□□ 2.5
VARS-218ENST00000459667 HRCP23327 699 aa30.69■■■□□ 2.5
VARS-218ENST00000459667 ADAMTS13Q76LX8 1427 aa30.69■■■□□ 2.5
VARS-218ENST00000459667 NWD1Q149M9 1564 aa30.68■■■□□ 2.5
VARS-218ENST00000459667 KCNA6P17658 529 aa30.68■■■□□ 2.5
VARS-218ENST00000459667 UBAP1LF5GYI3 381 aa30.66■■■□□ 2.5
VARS-218ENST00000459667 TBX22Q9Y458 520 aa30.66■■■□□ 2.5
VARS-218ENST00000459667 SETBP1Q9Y6X0 1596 aa30.65■■■□□ 2.5
VARS-218ENST00000459667 NRXN3Q9Y4C0 1643 aa30.65■■■□□ 2.5
VARS-218ENST00000459667 CHD2O14647 1828 aaKnown RBP30.63■■■□□ 2.49
VARS-218ENST00000459667 NKTRP30414 1462 aaKnown RBP30.63■■■□□ 2.49
VARS-218ENST00000459667 RPGRIP1LQ68CZ1 1315 aa30.61■■■□□ 2.49
VARS-218ENST00000459667 PPLO60437 1756 aa30.61■■■□□ 2.49
VARS-218ENST00000459667 XIRP1Q702N8 1843 aaKnown RBP30.61■■■□□ 2.49
VARS-218ENST00000459667 SPATA31E1Q6ZUB1 1445 aa30.59■■■□□ 2.49
VARS-218ENST00000459667 PIK3R4Q99570 1358 aa30.58■■■□□ 2.49
VARS-218ENST00000459667 TMEM94Q12767 1356 aa30.56■■■□□ 2.48
VARS-218ENST00000459667 VGFO15240 615 aaPredicted RBP30.56■■■□□ 2.48
VARS-218ENST00000459667 TOM1O60784 492 aa30.56■■■□□ 2.48
VARS-218ENST00000459667 PROSER2Q86WR7 435 aaPredicted RBP30.55■■■□□ 2.48
VARS-218ENST00000459667 RGL3Q3MIN7 710 aa30.53■■■□□ 2.48
VARS-218ENST00000459667 ANKRD30BQ9BXX2 1392 aa30.52■■■□□ 2.48
VARS-218ENST00000459667 ALKQ9UM73 1620 aa30.51■■■□□ 2.48
VARS-218ENST00000459667 IFT172Q9UG01 1749 aa30.51■■■□□ 2.47
VARS-218ENST00000459667 PTPRUQ92729 1446 aa30.49■■■□□ 2.47
VARS-218ENST00000459667 RBM33Q96EV2 1170 aaKnown RBP30.49■■■□□ 2.47
VARS-218ENST00000459667 SCAF1Q9H7N4 1312 aaKnown RBP30.48■■■□□ 2.47
VARS-218ENST00000459667 PIP4K2BP78356 416 aa30.48■■■□□ 2.47
VARS-218ENST00000459667 METP08581 1390 aa30.48■■■□□ 2.47
VARS-218ENST00000459667 XRN1Q8IZH2 1706 aaKnown RBP30.47■■■□□ 2.47
VARS-218ENST00000459667 AMOTL2Q9Y2J4 779 aa30.46■■■□□ 2.47
VARS-218ENST00000459667 SETD1AO15047 1707 aaKnown RBP30.46■■■□□ 2.47
VARS-218ENST00000459667 ADGRF5Q8IZF2 1346 aa30.43■■■□□ 2.46
VARS-218ENST00000459667 MSH6P52701 1360 aa30.41■■■□□ 2.46
VARS-218ENST00000459667 NCOA3Q9Y6Q9 1424 aa30.39■■■□□ 2.46
VARS-218ENST00000459667 TRIM26Q12899 539 aaPredicted RBP30.37■■■□□ 2.45
VARS-218ENST00000459667 C14orf37Q86TY3 774 aa30.36■■■□□ 2.45
VARS-218ENST00000459667 PIK3C2GO75747 1445 aa30.35■■■□□ 2.45
VARS-218ENST00000459667 MYOM2P54296 1465 aa30.35■■■□□ 2.45
VARS-218ENST00000459667 NRXN1Q9ULB1 1477 aa30.31■■■□□ 2.44
VARS-218ENST00000459667 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.3■■■□□ 2.44
VARS-218ENST00000459667 HSPA1LP34931 641 aa30.29■■■□□ 2.44
VARS-218ENST00000459667 PTCH1Q13635 1447 aa30.29■■■□□ 2.44
VARS-218ENST00000459667 C19orf44Q9H6X5 657 aa30.27■■■□□ 2.44
VARS-218ENST00000459667 PRAG1Q86YV5 1406 aa30.27■■■□□ 2.44
VARS-218ENST00000459667 ASXL1Q8IXJ9 1541 aa30.26■■■□□ 2.43
VARS-218ENST00000459667 FAM135BQ49AJ0 1406 aa30.25■■■□□ 2.43
VARS-218ENST00000459667 LAMC1P11047 1609 aa30.25■■■□□ 2.43
VARS-218ENST00000459667 ROBO2Q9HCK4 1378 aa30.24■■■□□ 2.43
VARS-218ENST00000459667 ROBO1Q9Y6N7 1651 aa30.23■■■□□ 2.43
VARS-218ENST00000459667 ATF3P18847 181 aa30.22■■■□□ 2.43
VARS-218ENST00000459667 CADPS2Q86UW7 1296 aa30.22■■■□□ 2.43
VARS-218ENST00000459667 DCAF11Q8TEB1 546 aa30.22■■■□□ 2.43
VARS-218ENST00000459667 SLAIN2Q9P270 581 aa30.22■■■□□ 2.43
VARS-218ENST00000459667 NALCNQ8IZF0 1738 aa30.22■■■□□ 2.43
VARS-218ENST00000459667 DCCP43146 1447 aa30.22■■■□□ 2.43
VARS-218ENST00000459667 ADGRL3Q9HAR2 1447 aa30.22■■■□□ 2.43
VARS-218ENST00000459667 C14orf93Q9H972 538 aaKnown RBP30.21■■■□□ 2.43
VARS-218ENST00000459667 DHX57Q6P158 1386 aaKnown RBP30.2■■■□□ 2.43
VARS-218ENST00000459667 LRPPRCP42704 1394 aaKnown RBP30.19■■■□□ 2.42
VARS-218ENST00000459667 TMEM132EQ6IEE7 984 aa30.19■■■□□ 2.42
VARS-218ENST00000459667 KDM2AQ9Y2K7 1162 aa30.19■■■□□ 2.42
VARS-218ENST00000459667 CFAP70Q5T0N1 1121 aa30.18■■■□□ 2.42
VARS-218ENST00000459667 KNDC1Q76NI1 1749 aa30.18■■■□□ 2.42
VARS-218ENST00000459667 TECPR2O15040 1411 aa30.17■■■□□ 2.42
VARS-218ENST00000459667 STAC3Q96MF2 364 aa30.17■■■□□ 2.42
VARS-218ENST00000459667 STK26Q9P289 416 aa30.17■■■□□ 2.42
VARS-218ENST00000459667 YTHDC2Q9H6S0 1430 aaKnown RBP30.15■■■□□ 2.42
VARS-218ENST00000459667 ABCC11Q96J66 1382 aa30.15■■■□□ 2.42
VARS-218ENST00000459667 MST1RQ04912 1400 aa30.1■■■□□ 2.41
VARS-218ENST00000459667 ADGRB1O14514 1584 aa30.07■■■□□ 2.4
VARS-218ENST00000459667 WAPLQ7Z5K2 1190 aa30.06■■■□□ 2.4
VARS-218ENST00000459667 SIN3AQ96ST3 1273 aa30.06■■■□□ 2.4
VARS-218ENST00000459667 PHLPP1O60346 1717 aa30.05■■■□□ 2.4
VARS-218ENST00000459667 PLEKHH1Q9ULM0 1364 aa30.04■■■□□ 2.4
VARS-218ENST00000459667 CDC42BPGQ6DT37 1551 aa30.03■■■□□ 2.4
VARS-218ENST00000459667 BRINP3Q76B58 766 aa30.02■■■□□ 2.4
VARS-218ENST00000459667 NEUROD1Q13562 356 aa30.01■■■□□ 2.39
VARS-218ENST00000459667 SIRT1Q96EB6 747 aa30.01■■■□□ 2.39
VARS-218ENST00000459667 DLC1Q96QB1 1528 aa30.01■■■□□ 2.39
VARS-218ENST00000459667 AHDC1Q5TGY3 1603 aaPredicted RBP30■■■□□ 2.39
VARS-218ENST00000459667 C1orf167Q5SNV9 1468 aa29.99■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms