RNA–Protein interactions for RNA: ENST00000456506.2

LMCD1-206, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2

Gene LMCD1, Length 1,059 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-206ENST00000456506 KCNA6P17658 529 aa18.66■□□□□ 0.58
LMCD1-206ENST00000456506 SENP3Q9H4L4 574 aaPredicted RBP18.66■□□□□ 0.58
LMCD1-206ENST00000456506 IQGAP3Q86VI3 1631 aa18.66■□□□□ 0.58
LMCD1-206ENST00000456506 ANKRD50Q9ULJ7 1429 aa18.65■□□□□ 0.58
LMCD1-206ENST00000456506 PHF23Q9BUL5 403 aaPredicted RBP18.64■□□□□ 0.57
LMCD1-206ENST00000456506 APLP2Q06481 763 aa18.63■□□□□ 0.57
LMCD1-206ENST00000456506 SLC26A8Q96RN1 970 aa18.63■□□□□ 0.57
LMCD1-206ENST00000456506 SLC52A1Q9NWF4 448 aa18.62■□□□□ 0.57
LMCD1-206ENST00000456506 COL16A1Q07092 1604 aaPredicted RBP18.61■□□□□ 0.57
LMCD1-206ENST00000456506 STAG3Q9UJ98 1225 aa18.61■□□□□ 0.57
LMCD1-206ENST00000456506 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.6■□□□□ 0.57
LMCD1-206ENST00000456506 PLEKHG1Q9ULL1 1385 aa18.6■□□□□ 0.57
LMCD1-206ENST00000456506 RBM33Q96EV2 1170 aaKnown RBP18.59■□□□□ 0.57
LMCD1-206ENST00000456506 DIP2AQ14689 1571 aa18.59■□□□□ 0.57
LMCD1-206ENST00000456506 SETD1AO15047 1707 aaKnown RBP18.58■□□□□ 0.57
LMCD1-206ENST00000456506 RIMS2Q9UQ26 1411 aa18.57■□□□□ 0.56
LMCD1-206ENST00000456506 NRXN3Q9Y4C0 1643 aa18.57■□□□□ 0.56
LMCD1-206ENST00000456506 PROSER2Q86WR7 435 aaPredicted RBP18.57■□□□□ 0.56
LMCD1-206ENST00000456506 ADAMTS13Q76LX8 1427 aa18.57■□□□□ 0.56
LMCD1-206ENST00000456506 SPHKAPQ2M3C7 1700 aa18.56■□□□□ 0.56
LMCD1-206ENST00000456506 SHPRHQ149N8 1683 aa18.54■□□□□ 0.56
LMCD1-206ENST00000456506 XRN1Q8IZH2 1706 aaKnown RBP18.54■□□□□ 0.56
LMCD1-206ENST00000456506 FAM50AQ14320 339 aaKnown RBP18.53■□□□□ 0.56
LMCD1-206ENST00000456506 MSH6P52701 1360 aa18.53■□□□□ 0.56
LMCD1-206ENST00000456506 ROCK1Q13464 1354 aa18.53■□□□□ 0.56
LMCD1-206ENST00000456506 AHDC1Q5TGY3 1603 aaPredicted RBP18.52■□□□□ 0.56
LMCD1-206ENST00000456506 POTEAQ6S8J7 498 aa18.52■□□□□ 0.56
LMCD1-206ENST00000456506 NCOA3Q9Y6Q9 1424 aa18.51■□□□□ 0.55
LMCD1-206ENST00000456506 SLAIN2Q9P270 581 aa18.49■□□□□ 0.55
LMCD1-206ENST00000456506 TBX22Q9Y458 520 aa18.49■□□□□ 0.55
LMCD1-206ENST00000456506 TRPM2O94759 1503 aa18.49■□□□□ 0.55
LMCD1-206ENST00000456506 LRP6O75581 1613 aa18.48■□□□□ 0.55
LMCD1-206ENST00000456506 SETBP1Q9Y6X0 1596 aa18.47■□□□□ 0.55
LMCD1-206ENST00000456506 PIK3R4Q99570 1358 aa18.47■□□□□ 0.55
LMCD1-206ENST00000456506 NHSL1Q5SYE7 1610 aa18.47■□□□□ 0.55
LMCD1-206ENST00000456506 PTPRUQ92729 1446 aa18.47■□□□□ 0.55
LMCD1-206ENST00000456506 JCADQ9P266 1359 aa18.45■□□□□ 0.54
LMCD1-206ENST00000456506 CLTCL1P53675 1640 aa18.44■□□□□ 0.54
LMCD1-206ENST00000456506 NALCNQ8IZF0 1738 aa18.43■□□□□ 0.54
LMCD1-206ENST00000456506 BCANQ96GW7 911 aa18.43■□□□□ 0.54
LMCD1-206ENST00000456506 KIF1BO60333 1816 aa18.43■□□□□ 0.54
LMCD1-206ENST00000456506 PPP1R15AO75807 674 aaPredicted RBP18.42■□□□□ 0.54
LMCD1-206ENST00000456506 HDGFP51858 240 aaKnown RBP18.42■□□□□ 0.54
LMCD1-206ENST00000456506 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.42■□□□□ 0.54
LMCD1-206ENST00000456506 NUTM2DQ5VT03 806 aaPredicted RBP18.41■□□□□ 0.54
LMCD1-206ENST00000456506 NEXMIFQ5QGS0 1516 aa18.4■□□□□ 0.54
LMCD1-206ENST00000456506 NUP155O75694 1391 aa18.39■□□□□ 0.53
LMCD1-206ENST00000456506 DCCP43146 1447 aa18.38■□□□□ 0.53
LMCD1-206ENST00000456506 CHGAP10645 457 aaKnown RBP18.37■□□□□ 0.53
LMCD1-206ENST00000456506 C19orf44Q9H6X5 657 aa18.37■□□□□ 0.53
LMCD1-206ENST00000456506 ASXL1Q8IXJ9 1541 aa18.37■□□□□ 0.53
LMCD1-206ENST00000456506 LAMC1P11047 1609 aa18.37■□□□□ 0.53
LMCD1-206ENST00000456506 MST1RQ04912 1400 aa18.35■□□□□ 0.53
LMCD1-206ENST00000456506 SPATA31A6Q5VVP1 1343 aa18.35■□□□□ 0.53
LMCD1-206ENST00000456506 CADPS2Q86UW7 1296 aa18.35■□□□□ 0.53
LMCD1-206ENST00000456506 AMOTL2Q9Y2J4 779 aa18.34■□□□□ 0.53
LMCD1-206ENST00000456506 PPLO60437 1756 aa18.32■□□□□ 0.52
LMCD1-206ENST00000456506 METP08581 1390 aa18.32■□□□□ 0.52
LMCD1-206ENST00000456506 BRINP3Q76B58 766 aa18.32■□□□□ 0.52
LMCD1-206ENST00000456506 SETD5Q9C0A6 1442 aa18.31■□□□□ 0.52
LMCD1-206ENST00000456506 ATF3P18847 181 aa18.3■□□□□ 0.52
LMCD1-206ENST00000456506 C14orf37Q86TY3 774 aa18.29■□□□□ 0.52
LMCD1-206ENST00000456506 ADGRL3Q9HAR2 1447 aa18.29■□□□□ 0.52
LMCD1-206ENST00000456506 RRBP1Q9P2E9 1410 aaKnown RBP18.27■□□□□ 0.52
LMCD1-206ENST00000456506 ITGAEP38570 1179 aa18.27■□□□□ 0.52
LMCD1-206ENST00000456506 NAIPQ13075 1403 aa18.26■□□□□ 0.51
LMCD1-206ENST00000456506 CDK12Q9NYV4 1490 aaPredicted RBP18.26■□□□□ 0.51
LMCD1-206ENST00000456506 PRAG1Q86YV5 1406 aa18.25■□□□□ 0.51
LMCD1-206ENST00000456506 IFT172Q9UG01 1749 aa18.25■□□□□ 0.51
LMCD1-206ENST00000456506 MARF1Q9Y4F3 1742 aaKnown RBP18.23■□□□□ 0.51
LMCD1-206ENST00000456506 COL22A1Q8NFW1 1626 aaPredicted RBP18.23■□□□□ 0.51
LMCD1-206ENST00000456506 ZNF772Q68DY9 489 aaPredicted RBP18.22■□□□□ 0.51
LMCD1-206ENST00000456506 PTCH1Q13635 1447 aa18.22■□□□□ 0.51
LMCD1-206ENST00000456506 PPARGC1BQ86YN6 1023 aaKnown RBP18.21■□□□□ 0.51
LMCD1-206ENST00000456506 PNPLA6Q8IY17 1366 aa18.2■□□□□ 0.5
LMCD1-206ENST00000456506 UPF1Q92900 1129 aaKnown RBP eCLIP18.2■□□□□ 0.5
LMCD1-206ENST00000456506 MEX3CQ5U5Q3 659 aaKnown RBP18.19■□□□□ 0.5
LMCD1-206ENST00000456506 C1orf167Q5SNV9 1468 aa18.19■□□□□ 0.5
LMCD1-206ENST00000456506 ZNF326Q5BKZ1 582 aaKnown RBP18.18■□□□□ 0.5
LMCD1-206ENST00000456506 DDX17Q92841 729 aaKnown RBP18.17■□□□□ 0.5
LMCD1-206ENST00000456506 ROBO2Q9HCK4 1378 aa18.17■□□□□ 0.5
LMCD1-206ENST00000456506 KNDC1Q76NI1 1749 aa18.16■□□□□ 0.5
LMCD1-206ENST00000456506 TRIM52Q96A61 297 aa18.16■□□□□ 0.5
LMCD1-206ENST00000456506 AFF2P51816 1311 aa18.16■□□□□ 0.5
LMCD1-206ENST00000456506 HFM1A2PYH4 1435 aa18.15■□□□□ 0.5
LMCD1-206ENST00000456506 RGS12O14924 1447 aa18.15■□□□□ 0.5
LMCD1-206ENST00000456506 NUTM2BA6NNL0 878 aaPredicted RBP18.15■□□□□ 0.5
LMCD1-206ENST00000456506 NUTM2EB1AL46 878 aaPredicted RBP18.15■□□□□ 0.5
LMCD1-206ENST00000456506 NUTM2AQ8IVF1 878 aaPredicted RBP18.15■□□□□ 0.5
LMCD1-206ENST00000456506 LRRC59Q96AG4 307 aaKnown RBP18.15■□□□□ 0.5
LMCD1-206ENST00000456506 CDC42BPGQ6DT37 1551 aa18.15■□□□□ 0.5
LMCD1-206ENST00000456506 RXRBP28702 533 aa18.14■□□□□ 0.49
LMCD1-206ENST00000456506 SOS2Q07890 1332 aaPredicted RBP18.11■□□□□ 0.49
LMCD1-206ENST00000456506 RGPD8O14715 1765 aaPredicted RBP18.11■□□□□ 0.49
LMCD1-206ENST00000456506 FMN2Q9NZ56 1722 aa18.1■□□□□ 0.49
LMCD1-206ENST00000456506 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.09■□□□□ 0.49
LMCD1-206ENST00000456506 PXDNQ92626 1479 aa18.08■□□□□ 0.49
LMCD1-206ENST00000456506 VGFO15240 615 aaPredicted RBP18.08■□□□□ 0.48
LMCD1-206ENST00000456506 ORAI2Q96SN7 254 aa18.08■□□□□ 0.48
LMCD1-206ENST00000456506 RPGRIP1LQ68CZ1 1315 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 669.3 ms