RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 PLEKHG1Q9ULL1 1385 aa26.93■■□□□ 1.9
MSH6-207ENST00000456246 PPP1R15AO75807 674 aaPredicted RBP26.91■■□□□ 1.9
MSH6-207ENST00000456246 CHGAP10645 457 aaKnown RBP26.91■■□□□ 1.9
MSH6-207ENST00000456246 KCNA6P17658 529 aa26.88■■□□□ 1.89
MSH6-207ENST00000456246 BCANQ96GW7 911 aa26.88■■□□□ 1.89
MSH6-207ENST00000456246 SLC26A8Q96RN1 970 aa26.87■■□□□ 1.89
MSH6-207ENST00000456246 NWD1Q149M9 1564 aa26.86■■□□□ 1.89
MSH6-207ENST00000456246 NKTRP30414 1462 aaKnown RBP26.86■■□□□ 1.89
MSH6-207ENST00000456246 TRPM2O94759 1503 aa26.85■■□□□ 1.89
MSH6-207ENST00000456246 SCAF1Q9H7N4 1312 aaKnown RBP26.85■■□□□ 1.89
MSH6-207ENST00000456246 PIP4K2BP78356 416 aa26.83■■□□□ 1.89
MSH6-207ENST00000456246 TRIM52Q96A61 297 aa26.83■■□□□ 1.89
MSH6-207ENST00000456246 DIP2AQ14689 1571 aa26.83■■□□□ 1.89
MSH6-207ENST00000456246 ALKQ9UM73 1620 aa26.82■■□□□ 1.88
MSH6-207ENST00000456246 TBX22Q9Y458 520 aa26.8■■□□□ 1.88
MSH6-207ENST00000456246 XIRP1Q702N8 1843 aaKnown RBP26.8■■□□□ 1.88
MSH6-207ENST00000456246 CLTCL1P53675 1640 aa26.77■■□□□ 1.88
MSH6-207ENST00000456246 TMEM94Q12767 1356 aa26.77■■□□□ 1.88
MSH6-207ENST00000456246 PIK3R4Q99570 1358 aa26.77■■□□□ 1.88
MSH6-207ENST00000456246 ACIN1Q9UKV3 1341 aaKnown RBP26.77■■□□□ 1.88
MSH6-207ENST00000456246 SLC4A1APQ9BWU0 796 aaKnown RBP26.77■■□□□ 1.88
MSH6-207ENST00000456246 CHD2O14647 1828 aaKnown RBP26.76■■□□□ 1.87
MSH6-207ENST00000456246 ADAMTS13Q76LX8 1427 aa26.75■■□□□ 1.87
MSH6-207ENST00000456246 PROSER2Q86WR7 435 aaPredicted RBP26.75■■□□□ 1.87
MSH6-207ENST00000456246 KIF1BO60333 1816 aa26.74■■□□□ 1.87
MSH6-207ENST00000456246 ZNF326Q5BKZ1 582 aaKnown RBP26.73■■□□□ 1.87
MSH6-207ENST00000456246 HSPA1LP34931 641 aa26.72■■□□□ 1.87
MSH6-207ENST00000456246 NUTM2DQ5VT03 806 aaPredicted RBP26.72■■□□□ 1.87
MSH6-207ENST00000456246 DISP3Q9P2K9 1392 aa26.71■■□□□ 1.87
MSH6-207ENST00000456246 SETBP1Q9Y6X0 1596 aa26.7■■□□□ 1.86
MSH6-207ENST00000456246 SENP3Q9H4L4 574 aaPredicted RBP26.69■■□□□ 1.86
MSH6-207ENST00000456246 NCOA3Q9Y6Q9 1424 aa26.69■■□□□ 1.86
MSH6-207ENST00000456246 NEXMIFQ5QGS0 1516 aa26.68■■□□□ 1.86
MSH6-207ENST00000456246 MSH6P52701 1360 aa26.68■■□□□ 1.86
MSH6-207ENST00000456246 NRXN3Q9Y4C0 1643 aa26.65■■□□□ 1.86
MSH6-207ENST00000456246 FAM135BQ49AJ0 1406 aa26.64■■□□□ 1.85
MSH6-207ENST00000456246 SETD5Q9C0A6 1442 aa26.62■■□□□ 1.85
MSH6-207ENST00000456246 RPGRIP1LQ68CZ1 1315 aa26.61■■□□□ 1.85
MSH6-207ENST00000456246 MPHOSPH9Q99550 1183 aa26.6■■□□□ 1.85
MSH6-207ENST00000456246 CCDC144AA2RUR9 1427 aa26.59■■□□□ 1.85
MSH6-207ENST00000456246 RBM33Q96EV2 1170 aaKnown RBP26.59■■□□□ 1.85
MSH6-207ENST00000456246 VGFO15240 615 aaPredicted RBP26.58■■□□□ 1.85
MSH6-207ENST00000456246 AMOTL2Q9Y2J4 779 aa26.57■■□□□ 1.84
MSH6-207ENST00000456246 PTPRUQ92729 1446 aa26.56■■□□□ 1.84
MSH6-207ENST00000456246 XRN1Q8IZH2 1706 aaKnown RBP26.56■■□□□ 1.84
MSH6-207ENST00000456246 C14orf37Q86TY3 774 aa26.54■■□□□ 1.84
MSH6-207ENST00000456246 ROBO1Q9Y6N7 1651 aa26.54■■□□□ 1.84
MSH6-207ENST00000456246 FOXD1Q16676 465 aa26.53■■□□□ 1.84
MSH6-207ENST00000456246 MED1Q15648 1581 aaPredicted RBP26.53■■□□□ 1.84
MSH6-207ENST00000456246 PPLO60437 1756 aa26.52■■□□□ 1.84
MSH6-207ENST00000456246 C19orf44Q9H6X5 657 aa26.52■■□□□ 1.84
MSH6-207ENST00000456246 METP08581 1390 aa26.51■■□□□ 1.83
MSH6-207ENST00000456246 CADPS2Q86UW7 1296 aa26.51■■□□□ 1.83
MSH6-207ENST00000456246 SLAIN2Q9P270 581 aa26.51■■□□□ 1.83
MSH6-207ENST00000456246 RAB3GAP2Q9H2M9 1393 aa26.5■■□□□ 1.83
MSH6-207ENST00000456246 DCCP43146 1447 aa26.49■■□□□ 1.83
MSH6-207ENST00000456246 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.48■■□□□ 1.83
MSH6-207ENST00000456246 ATF3P18847 181 aa26.47■■□□□ 1.83
MSH6-207ENST00000456246 SPATA31E1Q6ZUB1 1445 aa26.47■■□□□ 1.83
MSH6-207ENST00000456246 SETD1AO15047 1707 aaKnown RBP26.45■■□□□ 1.83
MSH6-207ENST00000456246 ANKRD30BQ9BXX2 1392 aa26.45■■□□□ 1.82
MSH6-207ENST00000456246 PRAG1Q86YV5 1406 aa26.44■■□□□ 1.82
MSH6-207ENST00000456246 PTCH1Q13635 1447 aa26.43■■□□□ 1.82
MSH6-207ENST00000456246 HRCP23327 699 aa26.42■■□□□ 1.82
MSH6-207ENST00000456246 IFT172Q9UG01 1749 aa26.41■■□□□ 1.82
MSH6-207ENST00000456246 ILDR2Q71H61 639 aa26.4■■□□□ 1.82
MSH6-207ENST00000456246 ADGRL3Q9HAR2 1447 aa26.39■■□□□ 1.82
MSH6-207ENST00000456246 RGL3Q3MIN7 710 aa26.38■■□□□ 1.81
MSH6-207ENST00000456246 PHLPP1O60346 1717 aa26.38■■□□□ 1.81
MSH6-207ENST00000456246 PHF23Q9BUL5 403 aaPredicted RBP26.36■■□□□ 1.81
MSH6-207ENST00000456246 ADGRF5Q8IZF2 1346 aa26.35■■□□□ 1.81
MSH6-207ENST00000456246 AHDC1Q5TGY3 1603 aaPredicted RBP26.34■■□□□ 1.81
MSH6-207ENST00000456246 NALCNQ8IZF0 1738 aa26.34■■□□□ 1.81
MSH6-207ENST00000456246 PIK3C2GO75747 1445 aa26.32■■□□□ 1.8
MSH6-207ENST00000456246 COL16A1Q07092 1604 aaPredicted RBP26.32■■□□□ 1.8
MSH6-207ENST00000456246 JCADQ9P266 1359 aa26.32■■□□□ 1.8
MSH6-207ENST00000456246 MST1RQ04912 1400 aa26.31■■□□□ 1.8
MSH6-207ENST00000456246 ROBO2Q9HCK4 1378 aa26.31■■□□□ 1.8
MSH6-207ENST00000456246 MYOM2P54296 1465 aa26.3■■□□□ 1.8
MSH6-207ENST00000456246 BRINP3Q76B58 766 aa26.29■■□□□ 1.8
MSH6-207ENST00000456246 SOCS7O14512 581 aa26.27■■□□□ 1.8
MSH6-207ENST00000456246 ASXL1Q8IXJ9 1541 aa26.27■■□□□ 1.8
MSH6-207ENST00000456246 LAMC1P11047 1609 aa26.26■■□□□ 1.79
MSH6-207ENST00000456246 TECPR2O15040 1411 aa26.26■■□□□ 1.79
MSH6-207ENST00000456246 NRXN1Q9ULB1 1477 aa26.25■■□□□ 1.79
MSH6-207ENST00000456246 LRPPRCP42704 1394 aaKnown RBP26.25■■□□□ 1.79
MSH6-207ENST00000456246 KNDC1Q76NI1 1749 aa26.24■■□□□ 1.79
MSH6-207ENST00000456246 ABCC11Q96J66 1382 aa26.22■■□□□ 1.79
MSH6-207ENST00000456246 NHSL1Q5SYE7 1610 aa26.21■■□□□ 1.79
MSH6-207ENST00000456246 SPATA31A6Q5VVP1 1343 aa26.2■■□□□ 1.79
MSH6-207ENST00000456246 SHPRHQ149N8 1683 aa26.2■■□□□ 1.78
MSH6-207ENST00000456246 C1orf167Q5SNV9 1468 aa26.2■■□□□ 1.78
MSH6-207ENST00000456246 CDC42BPGQ6DT37 1551 aa26.2■■□□□ 1.78
MSH6-207ENST00000456246 C14orf93Q9H972 538 aaKnown RBP26.19■■□□□ 1.78
MSH6-207ENST00000456246 STAC3Q96MF2 364 aa26.18■■□□□ 1.78
MSH6-207ENST00000456246 YTHDC2Q9H6S0 1430 aaKnown RBP26.18■■□□□ 1.78
MSH6-207ENST00000456246 STK26Q9P289 416 aa26.17■■□□□ 1.78
MSH6-207ENST00000456246 TMEM132EQ6IEE7 984 aa26.15■■□□□ 1.78
MSH6-207ENST00000456246 SIRT1Q96EB6 747 aa26.15■■□□□ 1.78
MSH6-207ENST00000456246 DHX57Q6P158 1386 aaKnown RBP26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms