RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 ACIN1Q9UKV3 1341 aaKnown RBP25.95■■□□□ 1.75
USP39-208ENST00000455732 SETD5Q9C0A6 1442 aa25.95■■□□□ 1.74
USP39-208ENST00000455732 CHGAP10645 457 aaKnown RBP25.94■■□□□ 1.74
USP39-208ENST00000455732 PLEKHG1Q9ULL1 1385 aa25.94■■□□□ 1.74
USP39-208ENST00000455732 TRPM2O94759 1503 aa25.93■■□□□ 1.74
USP39-208ENST00000455732 CLTCL1P53675 1640 aa25.92■■□□□ 1.74
USP39-208ENST00000455732 HDGFP51858 240 aaKnown RBP25.92■■□□□ 1.74
USP39-208ENST00000455732 SLC26A8Q96RN1 970 aa25.92■■□□□ 1.74
USP39-208ENST00000455732 ALKQ9UM73 1620 aa25.92■■□□□ 1.74
USP39-208ENST00000455732 SLC4A1APQ9BWU0 796 aaKnown RBP25.91■■□□□ 1.74
USP39-208ENST00000455732 SCAF1Q9H7N4 1312 aaKnown RBP25.89■■□□□ 1.74
USP39-208ENST00000455732 CHD2O14647 1828 aaKnown RBP25.89■■□□□ 1.74
USP39-208ENST00000455732 ILDR2Q71H61 639 aa25.89■■□□□ 1.74
USP39-208ENST00000455732 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.89■■□□□ 1.74
USP39-208ENST00000455732 NWD1Q149M9 1564 aa25.89■■□□□ 1.73
USP39-208ENST00000455732 KIF1BO60333 1816 aa25.88■■□□□ 1.73
USP39-208ENST00000455732 TOM1O60784 492 aa25.87■■□□□ 1.73
USP39-208ENST00000455732 PPP1R15AO75807 674 aaPredicted RBP25.87■■□□□ 1.73
USP39-208ENST00000455732 KCNA6P17658 529 aa25.86■■□□□ 1.73
USP39-208ENST00000455732 RAB3GAP2Q9H2M9 1393 aa25.85■■□□□ 1.73
USP39-208ENST00000455732 PIP4K2BP78356 416 aa25.84■■□□□ 1.73
USP39-208ENST00000455732 NUTM2DQ5VT03 806 aaPredicted RBP25.84■■□□□ 1.73
USP39-208ENST00000455732 BCANQ96GW7 911 aa25.84■■□□□ 1.73
USP39-208ENST00000455732 ADAMTS13Q76LX8 1427 aa25.83■■□□□ 1.73
USP39-208ENST00000455732 SENP3Q9H4L4 574 aaPredicted RBP25.83■■□□□ 1.73
USP39-208ENST00000455732 NKTRP30414 1462 aaKnown RBP25.82■■□□□ 1.72
USP39-208ENST00000455732 DIP2AQ14689 1571 aa25.82■■□□□ 1.72
USP39-208ENST00000455732 MPHOSPH9Q99550 1183 aa25.81■■□□□ 1.72
USP39-208ENST00000455732 TBX22Q9Y458 520 aa25.81■■□□□ 1.72
USP39-208ENST00000455732 NRXN3Q9Y4C0 1643 aa25.8■■□□□ 1.72
USP39-208ENST00000455732 NEXMIFQ5QGS0 1516 aa25.78■■□□□ 1.72
USP39-208ENST00000455732 SOCS7O14512 581 aa25.78■■□□□ 1.72
USP39-208ENST00000455732 TMEM94Q12767 1356 aa25.78■■□□□ 1.72
USP39-208ENST00000455732 HRCP23327 699 aa25.77■■□□□ 1.72
USP39-208ENST00000455732 HSPA1LP34931 641 aa25.77■■□□□ 1.72
USP39-208ENST00000455732 ZNF326Q5BKZ1 582 aaKnown RBP25.76■■□□□ 1.71
USP39-208ENST00000455732 SETBP1Q9Y6X0 1596 aa25.76■■□□□ 1.71
USP39-208ENST00000455732 PROSER2Q86WR7 435 aaPredicted RBP25.75■■□□□ 1.71
USP39-208ENST00000455732 PIK3R4Q99570 1358 aa25.74■■□□□ 1.71
USP39-208ENST00000455732 FOXD1Q16676 465 aa25.73■■□□□ 1.71
USP39-208ENST00000455732 MED1Q15648 1581 aaPredicted RBP25.72■■□□□ 1.71
USP39-208ENST00000455732 RBM33Q96EV2 1170 aaKnown RBP25.7■■□□□ 1.7
USP39-208ENST00000455732 CCDC144AA2RUR9 1427 aa25.7■■□□□ 1.7
USP39-208ENST00000455732 PPLO60437 1756 aa25.69■■□□□ 1.7
USP39-208ENST00000455732 PTPRUQ92729 1446 aa25.68■■□□□ 1.7
USP39-208ENST00000455732 XRN1Q8IZH2 1706 aaKnown RBP25.66■■□□□ 1.7
USP39-208ENST00000455732 NCOA3Q9Y6Q9 1424 aa25.64■■□□□ 1.7
USP39-208ENST00000455732 SETD1AO15047 1707 aaKnown RBP25.64■■□□□ 1.7
USP39-208ENST00000455732 RPGRIP1LQ68CZ1 1315 aa25.63■■□□□ 1.69
USP39-208ENST00000455732 SPATA31E1Q6ZUB1 1445 aa25.63■■□□□ 1.69
USP39-208ENST00000455732 MSH6P52701 1360 aa25.62■■□□□ 1.69
USP39-208ENST00000455732 AMOTL2Q9Y2J4 779 aa25.62■■□□□ 1.69
USP39-208ENST00000455732 METP08581 1390 aa25.61■■□□□ 1.69
USP39-208ENST00000455732 VGFO15240 615 aaPredicted RBP25.61■■□□□ 1.69
USP39-208ENST00000455732 IFT172Q9UG01 1749 aa25.6■■□□□ 1.69
USP39-208ENST00000455732 FAM135BQ49AJ0 1406 aa25.6■■□□□ 1.69
USP39-208ENST00000455732 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.59■■□□□ 1.69
USP39-208ENST00000455732 ROBO1Q9Y6N7 1651 aa25.58■■□□□ 1.69
USP39-208ENST00000455732 ANKRD30BQ9BXX2 1392 aa25.56■■□□□ 1.68
USP39-208ENST00000455732 PHF23Q9BUL5 403 aaPredicted RBP25.53■■□□□ 1.68
USP39-208ENST00000455732 C19orf44Q9H6X5 657 aa25.52■■□□□ 1.68
USP39-208ENST00000455732 RGL3Q3MIN7 710 aa25.51■■□□□ 1.67
USP39-208ENST00000455732 SLAIN2Q9P270 581 aa25.51■■□□□ 1.67
USP39-208ENST00000455732 C14orf37Q86TY3 774 aa25.5■■□□□ 1.67
USP39-208ENST00000455732 ADGRF5Q8IZF2 1346 aa25.48■■□□□ 1.67
USP39-208ENST00000455732 PRAG1Q86YV5 1406 aa25.47■■□□□ 1.67
USP39-208ENST00000455732 DCCP43146 1447 aa25.46■■□□□ 1.67
USP39-208ENST00000455732 NALCNQ8IZF0 1738 aa25.46■■□□□ 1.67
USP39-208ENST00000455732 CADPS2Q86UW7 1296 aa25.46■■□□□ 1.67
USP39-208ENST00000455732 PTCH1Q13635 1447 aa25.45■■□□□ 1.66
USP39-208ENST00000455732 ATF3P18847 181 aa25.43■■□□□ 1.66
USP39-208ENST00000455732 PHLPP1O60346 1717 aa25.43■■□□□ 1.66
USP39-208ENST00000455732 MYOM2P54296 1465 aa25.42■■□□□ 1.66
USP39-208ENST00000455732 TRIM26Q12899 539 aaPredicted RBP25.42■■□□□ 1.66
USP39-208ENST00000455732 PIK3C2GO75747 1445 aa25.42■■□□□ 1.66
USP39-208ENST00000455732 ADGRL3Q9HAR2 1447 aa25.42■■□□□ 1.66
USP39-208ENST00000455732 ROBO2Q9HCK4 1378 aa25.41■■□□□ 1.66
USP39-208ENST00000455732 NRXN1Q9ULB1 1477 aa25.4■■□□□ 1.66
USP39-208ENST00000455732 ASXL1Q8IXJ9 1541 aa25.38■■□□□ 1.65
USP39-208ENST00000455732 COL16A1Q07092 1604 aaPredicted RBP25.37■■□□□ 1.65
USP39-208ENST00000455732 MST1RQ04912 1400 aa25.37■■□□□ 1.65
USP39-208ENST00000455732 AHDC1Q5TGY3 1603 aaPredicted RBP25.36■■□□□ 1.65
USP39-208ENST00000455732 KNDC1Q76NI1 1749 aa25.35■■□□□ 1.65
USP39-208ENST00000455732 TECPR2O15040 1411 aa25.33■■□□□ 1.65
USP39-208ENST00000455732 LAMC1P11047 1609 aa25.33■■□□□ 1.65
USP39-208ENST00000455732 BRINP3Q76B58 766 aa25.32■■□□□ 1.64
USP39-208ENST00000455732 LRPPRCP42704 1394 aaKnown RBP25.31■■□□□ 1.64
USP39-208ENST00000455732 STAC3Q96MF2 364 aa25.31■■□□□ 1.64
USP39-208ENST00000455732 C14orf93Q9H972 538 aaKnown RBP25.3■■□□□ 1.64
USP39-208ENST00000455732 NHSL1Q5SYE7 1610 aa25.3■■□□□ 1.64
USP39-208ENST00000455732 ABCC11Q96J66 1382 aa25.3■■□□□ 1.64
USP39-208ENST00000455732 TMEM132EQ6IEE7 984 aa25.29■■□□□ 1.64
USP39-208ENST00000455732 DHX57Q6P158 1386 aaKnown RBP25.28■■□□□ 1.64
USP39-208ENST00000455732 YTHDC2Q9H6S0 1430 aaKnown RBP25.27■■□□□ 1.64
USP39-208ENST00000455732 STK26Q9P289 416 aa25.26■■□□□ 1.63
USP39-208ENST00000455732 JCADQ9P266 1359 aa25.26■■□□□ 1.63
USP39-208ENST00000455732 CFAP70Q5T0N1 1121 aa25.25■■□□□ 1.63
USP39-208ENST00000455732 C1orf167Q5SNV9 1468 aa25.25■■□□□ 1.63
USP39-208ENST00000455732 CDC42BPGQ6DT37 1551 aa25.24■■□□□ 1.63
USP39-208ENST00000455732 SHPRHQ149N8 1683 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms