RNA–Protein interactions for RNA: ENST00000455548.2

SMPD4-214, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 547 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-214ENST00000455548 CPS1P31327 1500 aa24.24■■□□□ 1.47
SMPD4-214ENST00000455548 CLTCL1P53675 1640 aa24.21■■□□□ 1.47
SMPD4-214ENST00000455548 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.21■■□□□ 1.47
SMPD4-214ENST00000455548 PPP1R15AO75807 674 aaPredicted RBP24.19■■□□□ 1.46
SMPD4-214ENST00000455548 KIF1BO60333 1816 aa24.19■■□□□ 1.46
SMPD4-214ENST00000455548 RAB3GAP2Q9H2M9 1393 aa24.17■■□□□ 1.46
SMPD4-214ENST00000455548 PLEKHG1Q9ULL1 1385 aa24.17■■□□□ 1.46
SMPD4-214ENST00000455548 MPHOSPH9Q99550 1183 aa24.17■■□□□ 1.46
SMPD4-214ENST00000455548 STRCP1A6NGW2 1772 aa24.15■■□□□ 1.46
SMPD4-214ENST00000455548 BCANQ96GW7 911 aa24.14■■□□□ 1.45
SMPD4-214ENST00000455548 ZNF326Q5BKZ1 582 aaKnown RBP24.12■■□□□ 1.45
SMPD4-214ENST00000455548 SLC26A8Q96RN1 970 aa24.12■■□□□ 1.45
SMPD4-214ENST00000455548 HRCP23327 699 aa24.1■■□□□ 1.45
SMPD4-214ENST00000455548 FOXD1Q16676 465 aa24.1■■□□□ 1.45
SMPD4-214ENST00000455548 NUTM2DQ5VT03 806 aaPredicted RBP24.08■■□□□ 1.45
SMPD4-214ENST00000455548 DIP2AQ14689 1571 aa24.08■■□□□ 1.44
SMPD4-214ENST00000455548 LRRC7Q96NW7 1537 aa24.07■■□□□ 1.44
SMPD4-214ENST00000455548 CCDC144AA2RUR9 1427 aa24.07■■□□□ 1.44
SMPD4-214ENST00000455548 KCNA6P17658 529 aa24.06■■□□□ 1.44
SMPD4-214ENST00000455548 TBX22Q9Y458 520 aa24.06■■□□□ 1.44
SMPD4-214ENST00000455548 NEXMIFQ5QGS0 1516 aa24.05■■□□□ 1.44
SMPD4-214ENST00000455548 UBAP1LF5GYI3 381 aa24.05■■□□□ 1.44
SMPD4-214ENST00000455548 SENP3Q9H4L4 574 aaPredicted RBP24.05■■□□□ 1.44
SMPD4-214ENST00000455548 NWD1Q149M9 1564 aa24.03■■□□□ 1.44
SMPD4-214ENST00000455548 CHD2O14647 1828 aaKnown RBP24.03■■□□□ 1.44
SMPD4-214ENST00000455548 ADAMTS13Q76LX8 1427 aa24.02■■□□□ 1.44
SMPD4-214ENST00000455548 SETBP1Q9Y6X0 1596 aa24.02■■□□□ 1.44
SMPD4-214ENST00000455548 RPGRIP1LQ68CZ1 1315 aa24.02■■□□□ 1.44
SMPD4-214ENST00000455548 NKTRP30414 1462 aaKnown RBP24.01■■□□□ 1.43
SMPD4-214ENST00000455548 PIK3R4Q99570 1358 aa24■■□□□ 1.43
SMPD4-214ENST00000455548 TOM1O60784 492 aa23.99■■□□□ 1.43
SMPD4-214ENST00000455548 NRXN3Q9Y4C0 1643 aa23.99■■□□□ 1.43
SMPD4-214ENST00000455548 XIRP1Q702N8 1843 aaKnown RBP23.98■■□□□ 1.43
SMPD4-214ENST00000455548 VGFO15240 615 aaPredicted RBP23.98■■□□□ 1.43
SMPD4-214ENST00000455548 PPLO60437 1756 aa23.98■■□□□ 1.43
SMPD4-214ENST00000455548 PROSER2Q86WR7 435 aaPredicted RBP23.97■■□□□ 1.43
SMPD4-214ENST00000455548 SPATA31E1Q6ZUB1 1445 aa23.95■■□□□ 1.42
SMPD4-214ENST00000455548 TMEM94Q12767 1356 aa23.94■■□□□ 1.42
SMPD4-214ENST00000455548 RGL3Q3MIN7 710 aa23.91■■□□□ 1.42
SMPD4-214ENST00000455548 ANKRD30BQ9BXX2 1392 aa23.91■■□□□ 1.42
SMPD4-214ENST00000455548 IFT172Q9UG01 1749 aa23.9■■□□□ 1.42
SMPD4-214ENST00000455548 ALKQ9UM73 1620 aa23.89■■□□□ 1.42
SMPD4-214ENST00000455548 SCAF1Q9H7N4 1312 aaKnown RBP23.88■■□□□ 1.41
SMPD4-214ENST00000455548 PTPRUQ92729 1446 aa23.87■■□□□ 1.41
SMPD4-214ENST00000455548 NCOA3Q9Y6Q9 1424 aa23.87■■□□□ 1.41
SMPD4-214ENST00000455548 PIP4K2BP78356 416 aa23.87■■□□□ 1.41
SMPD4-214ENST00000455548 AMOTL2Q9Y2J4 779 aa23.87■■□□□ 1.41
SMPD4-214ENST00000455548 XRN1Q8IZH2 1706 aaKnown RBP23.87■■□□□ 1.41
SMPD4-214ENST00000455548 METP08581 1390 aa23.86■■□□□ 1.41
SMPD4-214ENST00000455548 SETD1AO15047 1707 aaKnown RBP23.85■■□□□ 1.41
SMPD4-214ENST00000455548 MSH6P52701 1360 aa23.84■■□□□ 1.41
SMPD4-214ENST00000455548 RBM33Q96EV2 1170 aaKnown RBP23.84■■□□□ 1.41
SMPD4-214ENST00000455548 ADGRF5Q8IZF2 1346 aa23.82■■□□□ 1.4
SMPD4-214ENST00000455548 C14orf37Q86TY3 774 aa23.79■■□□□ 1.4
SMPD4-214ENST00000455548 TRIM26Q12899 539 aaPredicted RBP23.78■■□□□ 1.4
SMPD4-214ENST00000455548 MYOM2P54296 1465 aa23.77■■□□□ 1.4
SMPD4-214ENST00000455548 PIK3C2GO75747 1445 aa23.76■■□□□ 1.39
SMPD4-214ENST00000455548 C19orf44Q9H6X5 657 aa23.75■■□□□ 1.39
SMPD4-214ENST00000455548 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.75■■□□□ 1.39
SMPD4-214ENST00000455548 PTCH1Q13635 1447 aa23.74■■□□□ 1.39
SMPD4-214ENST00000455548 FAM135BQ49AJ0 1406 aa23.74■■□□□ 1.39
SMPD4-214ENST00000455548 PRAG1Q86YV5 1406 aa23.74■■□□□ 1.39
SMPD4-214ENST00000455548 NRXN1Q9ULB1 1477 aa23.74■■□□□ 1.39
SMPD4-214ENST00000455548 HSPA1LP34931 641 aa23.73■■□□□ 1.39
SMPD4-214ENST00000455548 LAMC1P11047 1609 aa23.72■■□□□ 1.39
SMPD4-214ENST00000455548 CADPS2Q86UW7 1296 aa23.71■■□□□ 1.39
SMPD4-214ENST00000455548 STAC3Q96MF2 364 aa23.71■■□□□ 1.39
SMPD4-214ENST00000455548 SLAIN2Q9P270 581 aa23.71■■□□□ 1.39
SMPD4-214ENST00000455548 DCCP43146 1447 aa23.7■■□□□ 1.38
SMPD4-214ENST00000455548 ATF3P18847 181 aa23.7■■□□□ 1.38
SMPD4-214ENST00000455548 ROBO1Q9Y6N7 1651 aa23.69■■□□□ 1.38
SMPD4-214ENST00000455548 ADGRL3Q9HAR2 1447 aa23.67■■□□□ 1.38
SMPD4-214ENST00000455548 ROBO2Q9HCK4 1378 aa23.67■■□□□ 1.38
SMPD4-214ENST00000455548 C14orf93Q9H972 538 aaKnown RBP23.67■■□□□ 1.38
SMPD4-214ENST00000455548 LRPPRCP42704 1394 aaKnown RBP23.66■■□□□ 1.38
SMPD4-214ENST00000455548 ASXL1Q8IXJ9 1541 aa23.66■■□□□ 1.38
SMPD4-214ENST00000455548 DCAF11Q8TEB1 546 aa23.66■■□□□ 1.38
SMPD4-214ENST00000455548 NALCNQ8IZF0 1738 aa23.66■■□□□ 1.38
SMPD4-214ENST00000455548 KNDC1Q76NI1 1749 aa23.65■■□□□ 1.38
SMPD4-214ENST00000455548 TECPR2O15040 1411 aa23.65■■□□□ 1.38
SMPD4-214ENST00000455548 KDM2AQ9Y2K7 1162 aa23.64■■□□□ 1.37
SMPD4-214ENST00000455548 ABCC11Q96J66 1382 aa23.64■■□□□ 1.37
SMPD4-214ENST00000455548 TMEM132EQ6IEE7 984 aa23.63■■□□□ 1.37
SMPD4-214ENST00000455548 DHX57Q6P158 1386 aaKnown RBP23.63■■□□□ 1.37
SMPD4-214ENST00000455548 YTHDC2Q9H6S0 1430 aaKnown RBP23.62■■□□□ 1.37
SMPD4-214ENST00000455548 CFAP70Q5T0N1 1121 aa23.62■■□□□ 1.37
SMPD4-214ENST00000455548 STK26Q9P289 416 aa23.62■■□□□ 1.37
SMPD4-214ENST00000455548 MST1RQ04912 1400 aa23.57■■□□□ 1.36
SMPD4-214ENST00000455548 PHLPP1O60346 1717 aa23.56■■□□□ 1.36
SMPD4-214ENST00000455548 SIRT1Q96EB6 747 aa23.56■■□□□ 1.36
SMPD4-214ENST00000455548 ADGRB1O14514 1584 aa23.54■■□□□ 1.36
SMPD4-214ENST00000455548 CDC42BPGQ6DT37 1551 aa23.53■■□□□ 1.36
SMPD4-214ENST00000455548 WAPLQ7Z5K2 1190 aa23.53■■□□□ 1.36
SMPD4-214ENST00000455548 AHDC1Q5TGY3 1603 aaPredicted RBP23.52■■□□□ 1.36
SMPD4-214ENST00000455548 BRINP3Q76B58 766 aa23.52■■□□□ 1.36
SMPD4-214ENST00000455548 DLC1Q96QB1 1528 aa23.52■■□□□ 1.36
SMPD4-214ENST00000455548 KIAA1210Q9ULL0 1709 aa23.5■■□□□ 1.35
SMPD4-214ENST00000455548 C1orf167Q5SNV9 1468 aa23.5■■□□□ 1.35
SMPD4-214ENST00000455548 SIN3AQ96ST3 1273 aa23.5■■□□□ 1.35
SMPD4-214ENST00000455548 DISP3Q9P2K9 1392 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms