RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 RIMS2Q9UQ26 1411 aa18.26■□□□□ 0.51
USP40-210ENST00000454354 TRPM2O94759 1503 aa18.25■□□□□ 0.51
USP40-210ENST00000454354 KIF1BO60333 1816 aa18.24■□□□□ 0.51
USP40-210ENST00000454354 PLEKHG1Q9ULL1 1385 aa18.24■□□□□ 0.51
USP40-210ENST00000454354 CLTCL1P53675 1640 aa18.23■□□□□ 0.51
USP40-210ENST00000454354 DIP2AQ14689 1571 aa18.23■□□□□ 0.51
USP40-210ENST00000454354 NKTRP30414 1462 aaKnown RBP18.22■□□□□ 0.51
USP40-210ENST00000454354 TOM1O60784 492 aa18.21■□□□□ 0.51
USP40-210ENST00000454354 HDGFP51858 240 aaKnown RBP18.19■□□□□ 0.5
USP40-210ENST00000454354 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.18■□□□□ 0.5
USP40-210ENST00000454354 NRXN3Q9Y4C0 1643 aa18.18■□□□□ 0.5
USP40-210ENST00000454354 KCNA6P17658 529 aa18.17■□□□□ 0.5
USP40-210ENST00000454354 SLC26A8Q96RN1 970 aa18.17■□□□□ 0.5
USP40-210ENST00000454354 ADAMTS13Q76LX8 1427 aa18.16■□□□□ 0.5
USP40-210ENST00000454354 CHGAP10645 457 aaKnown RBP18.16■□□□□ 0.5
USP40-210ENST00000454354 NEXMIFQ5QGS0 1516 aa18.15■□□□□ 0.5
USP40-210ENST00000454354 PPP1R15AO75807 674 aaPredicted RBP18.15■□□□□ 0.5
USP40-210ENST00000454354 SETBP1Q9Y6X0 1596 aa18.15■□□□□ 0.5
USP40-210ENST00000454354 TMEM94Q12767 1356 aa18.13■□□□□ 0.49
USP40-210ENST00000454354 PIP4K2BP78356 416 aa18.12■□□□□ 0.49
USP40-210ENST00000454354 TBX22Q9Y458 520 aa18.12■□□□□ 0.49
USP40-210ENST00000454354 PIK3R4Q99570 1358 aa18.12■□□□□ 0.49
USP40-210ENST00000454354 BCANQ96GW7 911 aa18.11■□□□□ 0.49
USP40-210ENST00000454354 SCAF1Q9H7N4 1312 aaKnown RBP18.11■□□□□ 0.49
USP40-210ENST00000454354 XRN1Q8IZH2 1706 aaKnown RBP18.11■□□□□ 0.49
USP40-210ENST00000454354 PPLO60437 1756 aa18.11■□□□□ 0.49
USP40-210ENST00000454354 TRIM52Q96A61 297 aa18.1■□□□□ 0.49
USP40-210ENST00000454354 HSPA1LP34931 641 aa18.09■□□□□ 0.49
USP40-210ENST00000454354 SETD1AO15047 1707 aaKnown RBP18.09■□□□□ 0.49
USP40-210ENST00000454354 NUTM2DQ5VT03 806 aaPredicted RBP18.08■□□□□ 0.48
USP40-210ENST00000454354 SLC4A1APQ9BWU0 796 aaKnown RBP18.08■□□□□ 0.48
USP40-210ENST00000454354 ROBO1Q9Y6N7 1651 aa18.07■□□□□ 0.48
USP40-210ENST00000454354 PROSER2Q86WR7 435 aaPredicted RBP18.07■□□□□ 0.48
USP40-210ENST00000454354 NCOA3Q9Y6Q9 1424 aa18.06■□□□□ 0.48
USP40-210ENST00000454354 IFT172Q9UG01 1749 aa18.06■□□□□ 0.48
USP40-210ENST00000454354 DISP3Q9P2K9 1392 aa18.05■□□□□ 0.48
USP40-210ENST00000454354 SENP3Q9H4L4 574 aaPredicted RBP18.05■□□□□ 0.48
USP40-210ENST00000454354 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.05■□□□□ 0.48
USP40-210ENST00000454354 MED1Q15648 1581 aaPredicted RBP18.04■□□□□ 0.48
USP40-210ENST00000454354 ZNF326Q5BKZ1 582 aaKnown RBP18.04■□□□□ 0.48
USP40-210ENST00000454354 FAM135BQ49AJ0 1406 aa18.04■□□□□ 0.48
USP40-210ENST00000454354 PTPRUQ92729 1446 aa18.04■□□□□ 0.48
USP40-210ENST00000454354 ACIN1Q9UKV3 1341 aaKnown RBP18.03■□□□□ 0.48
USP40-210ENST00000454354 SETD5Q9C0A6 1442 aa18.03■□□□□ 0.48
USP40-210ENST00000454354 MSH6P52701 1360 aa18.03■□□□□ 0.48
USP40-210ENST00000454354 RBM33Q96EV2 1170 aaKnown RBP18■□□□□ 0.47
USP40-210ENST00000454354 CCDC144AA2RUR9 1427 aa17.99■□□□□ 0.47
USP40-210ENST00000454354 RPGRIP1LQ68CZ1 1315 aa17.98■□□□□ 0.47
USP40-210ENST00000454354 MPHOSPH9Q99550 1183 aa17.98■□□□□ 0.47
USP40-210ENST00000454354 METP08581 1390 aa17.97■□□□□ 0.47
USP40-210ENST00000454354 AMOTL2Q9Y2J4 779 aa17.97■□□□□ 0.47
USP40-210ENST00000454354 SPATA31E1Q6ZUB1 1445 aa17.97■□□□□ 0.47
USP40-210ENST00000454354 PHLPP1O60346 1717 aa17.96■□□□□ 0.47
USP40-210ENST00000454354 NALCNQ8IZF0 1738 aa17.96■□□□□ 0.47
USP40-210ENST00000454354 FOXD1Q16676 465 aa17.96■□□□□ 0.47
USP40-210ENST00000454354 PRAG1Q86YV5 1406 aa17.96■□□□□ 0.47
USP40-210ENST00000454354 RAB3GAP2Q9H2M9 1393 aa17.95■□□□□ 0.46
USP40-210ENST00000454354 DCCP43146 1447 aa17.95■□□□□ 0.46
USP40-210ENST00000454354 VGFO15240 615 aaPredicted RBP17.94■□□□□ 0.46
USP40-210ENST00000454354 PTCH1Q13635 1447 aa17.93■□□□□ 0.46
USP40-210ENST00000454354 COL16A1Q07092 1604 aaPredicted RBP17.92■□□□□ 0.46
USP40-210ENST00000454354 SLAIN2Q9P270 581 aa17.92■□□□□ 0.46
USP40-210ENST00000454354 AHDC1Q5TGY3 1603 aaPredicted RBP17.91■□□□□ 0.46
USP40-210ENST00000454354 C19orf44Q9H6X5 657 aa17.91■□□□□ 0.46
USP40-210ENST00000454354 ILDR2Q71H61 639 aa17.9■□□□□ 0.46
USP40-210ENST00000454354 CADPS2Q86UW7 1296 aa17.9■□□□□ 0.46
USP40-210ENST00000454354 ADGRL3Q9HAR2 1447 aa17.89■□□□□ 0.46
USP40-210ENST00000454354 KNDC1Q76NI1 1749 aa17.89■□□□□ 0.46
USP40-210ENST00000454354 C14orf37Q86TY3 774 aa17.89■□□□□ 0.45
USP40-210ENST00000454354 ANKRD30BQ9BXX2 1392 aa17.89■□□□□ 0.45
USP40-210ENST00000454354 NHSL1Q5SYE7 1610 aa17.87■□□□□ 0.45
USP40-210ENST00000454354 LAMC1P11047 1609 aa17.87■□□□□ 0.45
USP40-210ENST00000454354 ATF3P18847 181 aa17.86■□□□□ 0.45
USP40-210ENST00000454354 PIK3C2GO75747 1445 aa17.86■□□□□ 0.45
USP40-210ENST00000454354 MST1RQ04912 1400 aa17.86■□□□□ 0.45
USP40-210ENST00000454354 HRCP23327 699 aa17.85■□□□□ 0.45
USP40-210ENST00000454354 MYOM2P54296 1465 aa17.85■□□□□ 0.45
USP40-210ENST00000454354 SHPRHQ149N8 1683 aa17.85■□□□□ 0.45
USP40-210ENST00000454354 ASXL1Q8IXJ9 1541 aa17.85■□□□□ 0.45
USP40-210ENST00000454354 NRXN1Q9ULB1 1477 aa17.85■□□□□ 0.45
USP40-210ENST00000454354 ROBO2Q9HCK4 1378 aa17.84■□□□□ 0.45
USP40-210ENST00000454354 ADGRF5Q8IZF2 1346 aa17.84■□□□□ 0.45
USP40-210ENST00000454354 TECPR2O15040 1411 aa17.82■□□□□ 0.44
USP40-210ENST00000454354 RGL3Q3MIN7 710 aa17.82■□□□□ 0.44
USP40-210ENST00000454354 CDC42BPGQ6DT37 1551 aa17.81■□□□□ 0.44
USP40-210ENST00000454354 JCADQ9P266 1359 aa17.79■□□□□ 0.44
USP40-210ENST00000454354 BRINP3Q76B58 766 aa17.79■□□□□ 0.44
USP40-210ENST00000454354 SOCS7O14512 581 aa17.77■□□□□ 0.44
USP40-210ENST00000454354 PHF23Q9BUL5 403 aaPredicted RBP17.77■□□□□ 0.44
USP40-210ENST00000454354 LRPPRCP42704 1394 aaKnown RBP17.77■□□□□ 0.43
USP40-210ENST00000454354 C1orf167Q5SNV9 1468 aa17.76■□□□□ 0.43
USP40-210ENST00000454354 ABCC11Q96J66 1382 aa17.75■□□□□ 0.43
USP40-210ENST00000454354 YTHDC2Q9H6S0 1430 aaKnown RBP17.74■□□□□ 0.43
USP40-210ENST00000454354 FMN2Q9NZ56 1722 aa17.74■□□□□ 0.43
USP40-210ENST00000454354 LRP6O75581 1613 aa17.72■□□□□ 0.43
USP40-210ENST00000454354 C14orf93Q9H972 538 aaKnown RBP17.72■□□□□ 0.43
USP40-210ENST00000454354 ADGRB1O14514 1584 aa17.71■□□□□ 0.43
USP40-210ENST00000454354 RGS17Q9UGC6 210 aaPredicted RBP17.71■□□□□ 0.43
USP40-210ENST00000454354 SPATA31A6Q5VVP1 1343 aa17.71■□□□□ 0.42
USP40-210ENST00000454354 DLC1Q96QB1 1528 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms