RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 PLEKHG1Q9ULL1 1385 aa18.95■□□□□ 0.62
CPSF4-208ENST00000452047 HFM1A2PYH4 1435 aa18.95■□□□□ 0.62
CPSF4-208ENST00000452047 PIP4K2BP78356 416 aa18.94■□□□□ 0.62
CPSF4-208ENST00000452047 SLC26A8Q96RN1 970 aa18.94■□□□□ 0.62
CPSF4-208ENST00000452047 SCAF1Q9H7N4 1312 aaKnown RBP18.93■□□□□ 0.62
CPSF4-208ENST00000452047 NKTRP30414 1462 aaKnown RBP18.92■□□□□ 0.62
CPSF4-208ENST00000452047 DISP3Q9P2K9 1392 aa18.92■□□□□ 0.62
CPSF4-208ENST00000452047 CHD2O14647 1828 aaKnown RBP18.91■□□□□ 0.62
CPSF4-208ENST00000452047 KCNA6P17658 529 aa18.91■□□□□ 0.62
CPSF4-208ENST00000452047 HSPA1LP34931 641 aa18.9■□□□□ 0.62
CPSF4-208ENST00000452047 TRPM2O94759 1503 aa18.9■□□□□ 0.62
CPSF4-208ENST00000452047 CLTCL1P53675 1640 aa18.89■□□□□ 0.62
CPSF4-208ENST00000452047 CHGAP10645 457 aaKnown RBP18.89■□□□□ 0.61
CPSF4-208ENST00000452047 ILDR2Q71H61 639 aa18.89■□□□□ 0.61
CPSF4-208ENST00000452047 DIP2AQ14689 1571 aa18.89■□□□□ 0.61
CPSF4-208ENST00000452047 PPP1R15AO75807 674 aaPredicted RBP18.88■□□□□ 0.61
CPSF4-208ENST00000452047 HDGFP51858 240 aaKnown RBP18.88■□□□□ 0.61
CPSF4-208ENST00000452047 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.88■□□□□ 0.61
CPSF4-208ENST00000452047 TMEM94Q12767 1356 aa18.88■□□□□ 0.61
CPSF4-208ENST00000452047 ADAMTS13Q76LX8 1427 aa18.88■□□□□ 0.61
CPSF4-208ENST00000452047 BCANQ96GW7 911 aa18.85■□□□□ 0.61
CPSF4-208ENST00000452047 SENP3Q9H4L4 574 aaPredicted RBP18.85■□□□□ 0.61
CPSF4-208ENST00000452047 NRXN3Q9Y4C0 1643 aa18.85■□□□□ 0.61
CPSF4-208ENST00000452047 NUTM2DQ5VT03 806 aaPredicted RBP18.84■□□□□ 0.61
CPSF4-208ENST00000452047 TBX22Q9Y458 520 aa18.84■□□□□ 0.61
CPSF4-208ENST00000452047 SETBP1Q9Y6X0 1596 aa18.83■□□□□ 0.6
CPSF4-208ENST00000452047 KIF1BO60333 1816 aa18.83■□□□□ 0.6
CPSF4-208ENST00000452047 PROSER2Q86WR7 435 aaPredicted RBP18.82■□□□□ 0.6
CPSF4-208ENST00000452047 NEXMIFQ5QGS0 1516 aa18.81■□□□□ 0.6
CPSF4-208ENST00000452047 RBM33Q96EV2 1170 aaKnown RBP18.81■□□□□ 0.6
CPSF4-208ENST00000452047 MED1Q15648 1581 aaPredicted RBP18.81■□□□□ 0.6
CPSF4-208ENST00000452047 PIK3R4Q99570 1358 aa18.81■□□□□ 0.6
CPSF4-208ENST00000452047 TRIM52Q96A61 297 aa18.79■□□□□ 0.6
CPSF4-208ENST00000452047 FAM135BQ49AJ0 1406 aa18.78■□□□□ 0.6
CPSF4-208ENST00000452047 ROBO1Q9Y6N7 1651 aa18.78■□□□□ 0.6
CPSF4-208ENST00000452047 XRN1Q8IZH2 1706 aaKnown RBP18.77■□□□□ 0.6
CPSF4-208ENST00000452047 PTPRUQ92729 1446 aa18.76■□□□□ 0.59
CPSF4-208ENST00000452047 SOCS7O14512 581 aa18.76■□□□□ 0.59
CPSF4-208ENST00000452047 SLC4A1APQ9BWU0 796 aaKnown RBP18.76■□□□□ 0.59
CPSF4-208ENST00000452047 MSH6P52701 1360 aa18.76■□□□□ 0.59
CPSF4-208ENST00000452047 NCOA3Q9Y6Q9 1424 aa18.75■□□□□ 0.59
CPSF4-208ENST00000452047 ZNF326Q5BKZ1 582 aaKnown RBP18.75■□□□□ 0.59
CPSF4-208ENST00000452047 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.72■□□□□ 0.59
CPSF4-208ENST00000452047 SETD1AO15047 1707 aaKnown RBP18.71■□□□□ 0.59
CPSF4-208ENST00000452047 PPLO60437 1756 aa18.71■□□□□ 0.59
CPSF4-208ENST00000452047 METP08581 1390 aa18.7■□□□□ 0.58
CPSF4-208ENST00000452047 AMOTL2Q9Y2J4 779 aa18.7■□□□□ 0.58
CPSF4-208ENST00000452047 FOXD1Q16676 465 aa18.68■□□□□ 0.58
CPSF4-208ENST00000452047 SLAIN2Q9P270 581 aa18.67■□□□□ 0.58
CPSF4-208ENST00000452047 PHLPP1O60346 1717 aa18.66■□□□□ 0.58
CPSF4-208ENST00000452047 SETD5Q9C0A6 1442 aa18.66■□□□□ 0.58
CPSF4-208ENST00000452047 MPHOSPH9Q99550 1183 aa18.65■□□□□ 0.58
CPSF4-208ENST00000452047 C19orf44Q9H6X5 657 aa18.65■□□□□ 0.58
CPSF4-208ENST00000452047 RPGRIP1LQ68CZ1 1315 aa18.65■□□□□ 0.58
CPSF4-208ENST00000452047 IFT172Q9UG01 1749 aa18.65■□□□□ 0.58
CPSF4-208ENST00000452047 CCDC144AA2RUR9 1427 aa18.65■□□□□ 0.58
CPSF4-208ENST00000452047 DCCP43146 1447 aa18.65■□□□□ 0.58
CPSF4-208ENST00000452047 C14orf37Q86TY3 774 aa18.64■□□□□ 0.57
CPSF4-208ENST00000452047 SPATA31E1Q6ZUB1 1445 aa18.64■□□□□ 0.57
CPSF4-208ENST00000452047 VGFO15240 615 aaPredicted RBP18.63■□□□□ 0.57
CPSF4-208ENST00000452047 COL16A1Q07092 1604 aaPredicted RBP18.63■□□□□ 0.57
CPSF4-208ENST00000452047 NALCNQ8IZF0 1738 aa18.63■□□□□ 0.57
CPSF4-208ENST00000452047 CADPS2Q86UW7 1296 aa18.62■□□□□ 0.57
CPSF4-208ENST00000452047 AHDC1Q5TGY3 1603 aaPredicted RBP18.61■□□□□ 0.57
CPSF4-208ENST00000452047 PRAG1Q86YV5 1406 aa18.61■□□□□ 0.57
CPSF4-208ENST00000452047 ACIN1Q9UKV3 1341 aaKnown RBP18.61■□□□□ 0.57
CPSF4-208ENST00000452047 PTCH1Q13635 1447 aa18.6■□□□□ 0.57
CPSF4-208ENST00000452047 ATF3P18847 181 aa18.6■□□□□ 0.57
CPSF4-208ENST00000452047 ADGRL3Q9HAR2 1447 aa18.59■□□□□ 0.57
CPSF4-208ENST00000452047 RAB3GAP2Q9H2M9 1393 aa18.59■□□□□ 0.57
CPSF4-208ENST00000452047 MST1RQ04912 1400 aa18.57■□□□□ 0.56
CPSF4-208ENST00000452047 PHF23Q9BUL5 403 aaPredicted RBP18.56■□□□□ 0.56
CPSF4-208ENST00000452047 ROBO2Q9HCK4 1378 aa18.55■□□□□ 0.56
CPSF4-208ENST00000452047 ASXL1Q8IXJ9 1541 aa18.55■□□□□ 0.56
CPSF4-208ENST00000452047 ANKRD30BQ9BXX2 1392 aa18.55■□□□□ 0.56
CPSF4-208ENST00000452047 ADGRF5Q8IZF2 1346 aa18.54■□□□□ 0.56
CPSF4-208ENST00000452047 NHSL1Q5SYE7 1610 aa18.54■□□□□ 0.56
CPSF4-208ENST00000452047 BRINP3Q76B58 766 aa18.54■□□□□ 0.56
CPSF4-208ENST00000452047 JCADQ9P266 1359 aa18.54■□□□□ 0.56
CPSF4-208ENST00000452047 RGL3Q3MIN7 710 aa18.53■□□□□ 0.56
CPSF4-208ENST00000452047 SHPRHQ149N8 1683 aa18.53■□□□□ 0.56
CPSF4-208ENST00000452047 PIK3C2GO75747 1445 aa18.52■□□□□ 0.56
CPSF4-208ENST00000452047 RGS17Q9UGC6 210 aaPredicted RBP18.52■□□□□ 0.56
CPSF4-208ENST00000452047 KNDC1Q76NI1 1749 aa18.5■□□□□ 0.55
CPSF4-208ENST00000452047 TECPR2O15040 1411 aa18.49■□□□□ 0.55
CPSF4-208ENST00000452047 MYOM2P54296 1465 aa18.48■□□□□ 0.55
CPSF4-208ENST00000452047 NRXN1Q9ULB1 1477 aa18.48■□□□□ 0.55
CPSF4-208ENST00000452047 LAMC1P11047 1609 aa18.48■□□□□ 0.55
CPSF4-208ENST00000452047 C1orf167Q5SNV9 1468 aa18.47■□□□□ 0.55
CPSF4-208ENST00000452047 LRP6O75581 1613 aa18.47■□□□□ 0.55
CPSF4-208ENST00000452047 CDC42BPGQ6DT37 1551 aa18.47■□□□□ 0.55
CPSF4-208ENST00000452047 LRPPRCP42704 1394 aaKnown RBP18.45■□□□□ 0.54
CPSF4-208ENST00000452047 SPATA31A6Q5VVP1 1343 aa18.45■□□□□ 0.54
CPSF4-208ENST00000452047 HRCP23327 699 aa18.44■□□□□ 0.54
CPSF4-208ENST00000452047 ABCC11Q96J66 1382 aa18.42■□□□□ 0.54
CPSF4-208ENST00000452047 YTHDC2Q9H6S0 1430 aaKnown RBP18.41■□□□□ 0.54
CPSF4-208ENST00000452047 TMEM132EQ6IEE7 984 aa18.41■□□□□ 0.54
CPSF4-208ENST00000452047 DDX17Q92841 729 aaKnown RBP18.4■□□□□ 0.54
CPSF4-208ENST00000452047 POTEAQ6S8J7 498 aa18.39■□□□□ 0.53
CPSF4-208ENST00000452047 C14orf93Q9H972 538 aaKnown RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms