RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 LRRC7Q96NW7 1537 aa14.62□□□□□ -0.07
USP54-207ENST00000451492 HFM1A2PYH4 1435 aa14.62□□□□□ -0.07
USP54-207ENST00000451492 RIMS2Q9UQ26 1411 aa14.62□□□□□ -0.07
USP54-207ENST00000451492 PPP1R15AO75807 674 aaPredicted RBP14.61□□□□□ -0.07
USP54-207ENST00000451492 PIP4K2BP78356 416 aa14.61□□□□□ -0.07
USP54-207ENST00000451492 NUTM2DQ5VT03 806 aaPredicted RBP14.61□□□□□ -0.07
USP54-207ENST00000451492 TRIM52Q96A61 297 aa14.61□□□□□ -0.07
USP54-207ENST00000451492 SLC26A8Q96RN1 970 aa14.61□□□□□ -0.07
USP54-207ENST00000451492 ZFYVE9O95405 1425 aa14.6□□□□□ -0.07
USP54-207ENST00000451492 ALKQ9UM73 1620 aa14.59□□□□□ -0.07
USP54-207ENST00000451492 TRPM2O94759 1503 aa14.58□□□□□ -0.08
USP54-207ENST00000451492 CHD2O14647 1828 aaKnown RBP14.58□□□□□ -0.08
USP54-207ENST00000451492 NWD1Q149M9 1564 aa14.57□□□□□ -0.08
USP54-207ENST00000451492 TOM1O60784 492 aa14.55□□□□□ -0.08
USP54-207ENST00000451492 PLEKHG1Q9ULL1 1385 aa14.55□□□□□ -0.08
USP54-207ENST00000451492 ZNF326Q5BKZ1 582 aaKnown RBP14.54□□□□□ -0.08
USP54-207ENST00000451492 RBM33Q96EV2 1170 aaKnown RBP14.54□□□□□ -0.08
USP54-207ENST00000451492 NRXN3Q9Y4C0 1643 aa14.53□□□□□ -0.08
USP54-207ENST00000451492 DIP2AQ14689 1571 aa14.53□□□□□ -0.08
USP54-207ENST00000451492 SLC4A1APQ9BWU0 796 aaKnown RBP14.52□□□□□ -0.09
USP54-207ENST00000451492 NEXMIFQ5QGS0 1516 aa14.51□□□□□ -0.09
USP54-207ENST00000451492 NKTRP30414 1462 aaKnown RBP14.51□□□□□ -0.09
USP54-207ENST00000451492 HDGFP51858 240 aaKnown RBP14.51□□□□□ -0.09
USP54-207ENST00000451492 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.51□□□□□ -0.09
USP54-207ENST00000451492 TMEM94Q12767 1356 aa14.5□□□□□ -0.09
USP54-207ENST00000451492 FOXD1Q16676 465 aa14.5□□□□□ -0.09
USP54-207ENST00000451492 PPLO60437 1756 aa14.5□□□□□ -0.09
USP54-207ENST00000451492 ADAMTS13Q76LX8 1427 aa14.49□□□□□ -0.09
USP54-207ENST00000451492 DISP3Q9P2K9 1392 aa14.49□□□□□ -0.09
USP54-207ENST00000451492 KCNA6P17658 529 aa14.49□□□□□ -0.09
USP54-207ENST00000451492 HSPA1LP34931 641 aa14.49□□□□□ -0.09
USP54-207ENST00000451492 PROSER2Q86WR7 435 aaPredicted RBP14.49□□□□□ -0.09
USP54-207ENST00000451492 ROBO1Q9Y6N7 1651 aa14.48□□□□□ -0.09
USP54-207ENST00000451492 SETBP1Q9Y6X0 1596 aa14.47□□□□□ -0.09
USP54-207ENST00000451492 XRN1Q8IZH2 1706 aaKnown RBP14.46□□□□□ -0.1
USP54-207ENST00000451492 SETD1AO15047 1707 aaKnown RBP14.45□□□□□ -0.1
USP54-207ENST00000451492 SETD5Q9C0A6 1442 aa14.45□□□□□ -0.1
USP54-207ENST00000451492 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.44□□□□□ -0.1
USP54-207ENST00000451492 IFT172Q9UG01 1749 aa14.44□□□□□ -0.1
USP54-207ENST00000451492 MED1Q15648 1581 aaPredicted RBP14.44□□□□□ -0.1
USP54-207ENST00000451492 PTPRUQ92729 1446 aa14.43□□□□□ -0.1
USP54-207ENST00000451492 C14orf37Q86TY3 774 aa14.43□□□□□ -0.1
USP54-207ENST00000451492 TBX22Q9Y458 520 aa14.43□□□□□ -0.1
USP54-207ENST00000451492 MSH6P52701 1360 aa14.43□□□□□ -0.1
USP54-207ENST00000451492 PHLPP1O60346 1717 aa14.42□□□□□ -0.1
USP54-207ENST00000451492 RAB3GAP2Q9H2M9 1393 aa14.42□□□□□ -0.1
USP54-207ENST00000451492 CCDC144AA2RUR9 1427 aa14.41□□□□□ -0.1
USP54-207ENST00000451492 MPHOSPH9Q99550 1183 aa14.41□□□□□ -0.1
USP54-207ENST00000451492 NALCNQ8IZF0 1738 aa14.41□□□□□ -0.1
USP54-207ENST00000451492 METP08581 1390 aa14.39□□□□□ -0.11
USP54-207ENST00000451492 PIK3R4Q99570 1358 aa14.39□□□□□ -0.11
USP54-207ENST00000451492 AMOTL2Q9Y2J4 779 aa14.39□□□□□ -0.11
USP54-207ENST00000451492 RGL3Q3MIN7 710 aa14.37□□□□□ -0.11
USP54-207ENST00000451492 FAM135BQ49AJ0 1406 aa14.34□□□□□ -0.11
USP54-207ENST00000451492 ILDR2Q71H61 639 aa14.34□□□□□ -0.11
USP54-207ENST00000451492 VGFO15240 615 aaPredicted RBP14.33□□□□□ -0.12
USP54-207ENST00000451492 SPATA31E1Q6ZUB1 1445 aa14.32□□□□□ -0.12
USP54-207ENST00000451492 ATF3P18847 181 aa14.32□□□□□ -0.12
USP54-207ENST00000451492 SLAIN2Q9P270 581 aa14.32□□□□□ -0.12
USP54-207ENST00000451492 RPGRIP1LQ68CZ1 1315 aa14.32□□□□□ -0.12
USP54-207ENST00000451492 NCOA3Q9Y6Q9 1424 aa14.32□□□□□ -0.12
USP54-207ENST00000451492 COL16A1Q07092 1604 aaPredicted RBP14.31□□□□□ -0.12
USP54-207ENST00000451492 ADGRF5Q8IZF2 1346 aa14.31□□□□□ -0.12
USP54-207ENST00000451492 PHF23Q9BUL5 403 aaPredicted RBP14.3□□□□□ -0.12
USP54-207ENST00000451492 ASXL1Q8IXJ9 1541 aa14.3□□□□□ -0.12
USP54-207ENST00000451492 KNDC1Q76NI1 1749 aa14.29□□□□□ -0.12
USP54-207ENST00000451492 CADPS2Q86UW7 1296 aa14.29□□□□□ -0.12
USP54-207ENST00000451492 C19orf44Q9H6X5 657 aa14.29□□□□□ -0.12
USP54-207ENST00000451492 ADGRL3Q9HAR2 1447 aa14.29□□□□□ -0.12
USP54-207ENST00000451492 PTCH1Q13635 1447 aa14.28□□□□□ -0.12
USP54-207ENST00000451492 NHSL1Q5SYE7 1610 aa14.28□□□□□ -0.12
USP54-207ENST00000451492 LAMC1P11047 1609 aa14.27□□□□□ -0.12
USP54-207ENST00000451492 AHDC1Q5TGY3 1603 aaPredicted RBP14.27□□□□□ -0.12
USP54-207ENST00000451492 DCCP43146 1447 aa14.27□□□□□ -0.12
USP54-207ENST00000451492 ANKRD30BQ9BXX2 1392 aa14.27□□□□□ -0.12
USP54-207ENST00000451492 ROBO2Q9HCK4 1378 aa14.27□□□□□ -0.12
USP54-207ENST00000451492 ACIN1Q9UKV3 1341 aaKnown RBP14.27□□□□□ -0.12
USP54-207ENST00000451492 PIK3C2GO75747 1445 aa14.26□□□□□ -0.13
USP54-207ENST00000451492 MST1RQ04912 1400 aa14.26□□□□□ -0.13
USP54-207ENST00000451492 STK26Q9P289 416 aa14.25□□□□□ -0.13
USP54-207ENST00000451492 SHPRHQ149N8 1683 aa14.25□□□□□ -0.13
USP54-207ENST00000451492 MYOM2P54296 1465 aa14.24□□□□□ -0.13
USP54-207ENST00000451492 TMEM132EQ6IEE7 984 aa14.23□□□□□ -0.13
USP54-207ENST00000451492 BRINP3Q76B58 766 aa14.23□□□□□ -0.13
USP54-207ENST00000451492 CDC42BPGQ6DT37 1551 aa14.22□□□□□ -0.13
USP54-207ENST00000451492 PRAG1Q86YV5 1406 aa14.21□□□□□ -0.13
USP54-207ENST00000451492 JCADQ9P266 1359 aa14.21□□□□□ -0.14
USP54-207ENST00000451492 C1orf167Q5SNV9 1468 aa14.2□□□□□ -0.14
USP54-207ENST00000451492 NRXN1Q9ULB1 1477 aa14.2□□□□□ -0.14
USP54-207ENST00000451492 RGPD8O14715 1765 aaPredicted RBP14.2□□□□□ -0.14
USP54-207ENST00000451492 DDX17Q92841 729 aaKnown RBP14.2□□□□□ -0.14
USP54-207ENST00000451492 FMN2Q9NZ56 1722 aa14.2□□□□□ -0.14
USP54-207ENST00000451492 YTHDC2Q9H6S0 1430 aaKnown RBP14.19□□□□□ -0.14
USP54-207ENST00000451492 KDM2AQ9Y2K7 1162 aa14.19□□□□□ -0.14
USP54-207ENST00000451492 LRPPRCP42704 1394 aaKnown RBP14.19□□□□□ -0.14
USP54-207ENST00000451492 PLEKHH1Q9ULM0 1364 aa14.19□□□□□ -0.14
USP54-207ENST00000451492 LRP6O75581 1613 aa14.19□□□□□ -0.14
USP54-207ENST00000451492 TECPR2O15040 1411 aa14.18□□□□□ -0.14
USP54-207ENST00000451492 CFAP70Q5T0N1 1121 aa14.18□□□□□ -0.14
USP54-207ENST00000451492 WAPLQ7Z5K2 1190 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms