RNA–Protein interactions for RNA: ENST00000446553.2

CDCA3-203, Transcript of cell division cycle associated 3, humanhuman

TSL 2

Gene CDCA3, Length 646 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-203ENST00000446553 HFM1A2PYH4 1435 aa17.1■□□□□ 0.33
CDCA3-203ENST00000446553 RIMS2Q9UQ26 1411 aa17.1■□□□□ 0.33
CDCA3-203ENST00000446553 NWD1Q149M9 1564 aa17.08■□□□□ 0.32
CDCA3-203ENST00000446553 NKTRP30414 1462 aaKnown RBP17.08■□□□□ 0.32
CDCA3-203ENST00000446553 XIRP1Q702N8 1843 aaKnown RBP17.07■□□□□ 0.32
CDCA3-203ENST00000446553 SPHKAPQ2M3C7 1700 aa17.07■□□□□ 0.32
CDCA3-203ENST00000446553 SLC26A8Q96RN1 970 aa17.06■□□□□ 0.32
CDCA3-203ENST00000446553 TBX22Q9Y458 520 aa17.06■□□□□ 0.32
CDCA3-203ENST00000446553 PIP4K2BP78356 416 aa17.05■□□□□ 0.32
CDCA3-203ENST00000446553 DIP2AQ14689 1571 aa17.04■□□□□ 0.32
CDCA3-203ENST00000446553 PPP1R15AO75807 674 aaPredicted RBP17.04■□□□□ 0.32
CDCA3-203ENST00000446553 PIK3R4Q99570 1358 aa17.03■□□□□ 0.32
CDCA3-203ENST00000446553 DISP3Q9P2K9 1392 aa17.03■□□□□ 0.32
CDCA3-203ENST00000446553 CHD2O14647 1828 aaKnown RBP17.03■□□□□ 0.32
CDCA3-203ENST00000446553 TMEM94Q12767 1356 aa17.02■□□□□ 0.32
CDCA3-203ENST00000446553 SCAF1Q9H7N4 1312 aaKnown RBP17.02■□□□□ 0.32
CDCA3-203ENST00000446553 CHGAP10645 457 aaKnown RBP17.02■□□□□ 0.32
CDCA3-203ENST00000446553 HSPA1LP34931 641 aa17.02■□□□□ 0.32
CDCA3-203ENST00000446553 TRPM2O94759 1503 aa17.01■□□□□ 0.31
CDCA3-203ENST00000446553 ADAMTS13Q76LX8 1427 aa17.01■□□□□ 0.31
CDCA3-203ENST00000446553 NCOA3Q9Y6Q9 1424 aa17.01■□□□□ 0.31
CDCA3-203ENST00000446553 PROSER2Q86WR7 435 aaPredicted RBP17■□□□□ 0.31
CDCA3-203ENST00000446553 BCANQ96GW7 911 aa17■□□□□ 0.31
CDCA3-203ENST00000446553 FAM135BQ49AJ0 1406 aa16.99■□□□□ 0.31
CDCA3-203ENST00000446553 ACIN1Q9UKV3 1341 aaKnown RBP16.98■□□□□ 0.31
CDCA3-203ENST00000446553 CLTCL1P53675 1640 aa16.96■□□□□ 0.31
CDCA3-203ENST00000446553 SETBP1Q9Y6X0 1596 aa16.96■□□□□ 0.31
CDCA3-203ENST00000446553 KIF1BO60333 1816 aa16.95■□□□□ 0.3
CDCA3-203ENST00000446553 MSH6P52701 1360 aa16.94■□□□□ 0.3
CDCA3-203ENST00000446553 TRIM52Q96A61 297 aa16.94■□□□□ 0.3
CDCA3-203ENST00000446553 SLC4A1APQ9BWU0 796 aaKnown RBP16.93■□□□□ 0.3
CDCA3-203ENST00000446553 NRXN3Q9Y4C0 1643 aa16.92■□□□□ 0.3
CDCA3-203ENST00000446553 NEXMIFQ5QGS0 1516 aa16.92■□□□□ 0.3
CDCA3-203ENST00000446553 ZNF326Q5BKZ1 582 aaKnown RBP16.91■□□□□ 0.3
CDCA3-203ENST00000446553 NUTM2DQ5VT03 806 aaPredicted RBP16.91■□□□□ 0.3
CDCA3-203ENST00000446553 RPGRIP1LQ68CZ1 1315 aa16.91■□□□□ 0.3
CDCA3-203ENST00000446553 MED1Q15648 1581 aaPredicted RBP16.9■□□□□ 0.3
CDCA3-203ENST00000446553 ILDR2Q71H61 639 aa16.89■□□□□ 0.29
CDCA3-203ENST00000446553 PTPRUQ92729 1446 aa16.88■□□□□ 0.29
CDCA3-203ENST00000446553 XRN1Q8IZH2 1706 aaKnown RBP16.88■□□□□ 0.29
CDCA3-203ENST00000446553 C19orf44Q9H6X5 657 aa16.88■□□□□ 0.29
CDCA3-203ENST00000446553 SLAIN2Q9P270 581 aa16.88■□□□□ 0.29
CDCA3-203ENST00000446553 AMOTL2Q9Y2J4 779 aa16.88■□□□□ 0.29
CDCA3-203ENST00000446553 ROBO1Q9Y6N7 1651 aa16.88■□□□□ 0.29
CDCA3-203ENST00000446553 VGFO15240 615 aaPredicted RBP16.87■□□□□ 0.29
CDCA3-203ENST00000446553 RBM33Q96EV2 1170 aaKnown RBP16.87■□□□□ 0.29
CDCA3-203ENST00000446553 CADPS2Q86UW7 1296 aa16.86■□□□□ 0.29
CDCA3-203ENST00000446553 DCCP43146 1447 aa16.86■□□□□ 0.29
CDCA3-203ENST00000446553 SENP3Q9H4L4 574 aaPredicted RBP16.85■□□□□ 0.29
CDCA3-203ENST00000446553 MPHOSPH9Q99550 1183 aa16.84■□□□□ 0.29
CDCA3-203ENST00000446553 METP08581 1390 aa16.84■□□□□ 0.29
CDCA3-203ENST00000446553 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.84■□□□□ 0.29
CDCA3-203ENST00000446553 SOCS7O14512 581 aa16.83■□□□□ 0.28
CDCA3-203ENST00000446553 PRAG1Q86YV5 1406 aa16.83■□□□□ 0.28
CDCA3-203ENST00000446553 SETD5Q9C0A6 1442 aa16.83■□□□□ 0.28
CDCA3-203ENST00000446553 PPLO60437 1756 aa16.82■□□□□ 0.28
CDCA3-203ENST00000446553 CCDC144AA2RUR9 1427 aa16.82■□□□□ 0.28
CDCA3-203ENST00000446553 ATF3P18847 181 aa16.81■□□□□ 0.28
CDCA3-203ENST00000446553 C14orf37Q86TY3 774 aa16.81■□□□□ 0.28
CDCA3-203ENST00000446553 SETD1AO15047 1707 aaKnown RBP16.8■□□□□ 0.28
CDCA3-203ENST00000446553 SPATA31E1Q6ZUB1 1445 aa16.79■□□□□ 0.28
CDCA3-203ENST00000446553 PTCH1Q13635 1447 aa16.79■□□□□ 0.28
CDCA3-203ENST00000446553 ANKRD30BQ9BXX2 1392 aa16.77■□□□□ 0.28
CDCA3-203ENST00000446553 PHLPP1O60346 1717 aa16.77■□□□□ 0.28
CDCA3-203ENST00000446553 FOXD1Q16676 465 aa16.77■□□□□ 0.28
CDCA3-203ENST00000446553 ADGRL3Q9HAR2 1447 aa16.77■□□□□ 0.27
CDCA3-203ENST00000446553 AHDC1Q5TGY3 1603 aaPredicted RBP16.77■□□□□ 0.27
CDCA3-203ENST00000446553 PHF23Q9BUL5 403 aaPredicted RBP16.76■□□□□ 0.27
CDCA3-203ENST00000446553 JCADQ9P266 1359 aa16.76■□□□□ 0.27
CDCA3-203ENST00000446553 HRCP23327 699 aa16.75■□□□□ 0.27
CDCA3-203ENST00000446553 COL16A1Q07092 1604 aaPredicted RBP16.74■□□□□ 0.27
CDCA3-203ENST00000446553 IFT172Q9UG01 1749 aa16.74■□□□□ 0.27
CDCA3-203ENST00000446553 RAB3GAP2Q9H2M9 1393 aa16.74■□□□□ 0.27
CDCA3-203ENST00000446553 MST1RQ04912 1400 aa16.73■□□□□ 0.27
CDCA3-203ENST00000446553 BRINP3Q76B58 766 aa16.72■□□□□ 0.27
CDCA3-203ENST00000446553 NALCNQ8IZF0 1738 aa16.7■□□□□ 0.26
CDCA3-203ENST00000446553 ROBO2Q9HCK4 1378 aa16.7■□□□□ 0.26
CDCA3-203ENST00000446553 ASXL1Q8IXJ9 1541 aa16.7■□□□□ 0.26
CDCA3-203ENST00000446553 TECPR2O15040 1411 aa16.7■□□□□ 0.26
CDCA3-203ENST00000446553 SPATA31A6Q5VVP1 1343 aa16.7■□□□□ 0.26
CDCA3-203ENST00000446553 ADGRF5Q8IZF2 1346 aa16.7■□□□□ 0.26
CDCA3-203ENST00000446553 PIK3C2GO75747 1445 aa16.69■□□□□ 0.26
CDCA3-203ENST00000446553 RGL3Q3MIN7 710 aa16.68■□□□□ 0.26
CDCA3-203ENST00000446553 RGS17Q9UGC6 210 aaPredicted RBP16.68■□□□□ 0.26
CDCA3-203ENST00000446553 SHPRHQ149N8 1683 aa16.68■□□□□ 0.26
CDCA3-203ENST00000446553 NHSL1Q5SYE7 1610 aa16.67■□□□□ 0.26
CDCA3-203ENST00000446553 MYOM2P54296 1465 aa16.67■□□□□ 0.26
CDCA3-203ENST00000446553 NRXN1Q9ULB1 1477 aa16.67■□□□□ 0.26
CDCA3-203ENST00000446553 LRPPRCP42704 1394 aaKnown RBP16.66■□□□□ 0.26
CDCA3-203ENST00000446553 ABCC11Q96J66 1382 aa16.66■□□□□ 0.26
CDCA3-203ENST00000446553 C1orf167Q5SNV9 1468 aa16.66■□□□□ 0.26
CDCA3-203ENST00000446553 LAMC1P11047 1609 aa16.65■□□□□ 0.26
CDCA3-203ENST00000446553 KNDC1Q76NI1 1749 aa16.65■□□□□ 0.26
CDCA3-203ENST00000446553 SIRT1Q96EB6 747 aa16.64■□□□□ 0.25
CDCA3-203ENST00000446553 CDC42BPGQ6DT37 1551 aa16.64■□□□□ 0.25
CDCA3-203ENST00000446553 STAC3Q96MF2 364 aa16.63■□□□□ 0.25
CDCA3-203ENST00000446553 LRRC59Q96AG4 307 aaKnown RBP16.62■□□□□ 0.25
CDCA3-203ENST00000446553 C14orf93Q9H972 538 aaKnown RBP16.62■□□□□ 0.25
CDCA3-203ENST00000446553 YTHDC2Q9H6S0 1430 aaKnown RBP16.6■□□□□ 0.25
CDCA3-203ENST00000446553 LRP6O75581 1613 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms