RNA–Protein interactions for RNA: ENST00000442461.6

LIN54-202, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best) BASIC

Gene LIN54, Length 4,254 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-202ENST00000442461 NPHP1O15259 732 aa12.54□□□□□ -0.4
LIN54-202ENST00000442461 PRIMPOLQ96LW4 560 aa12.54□□□□□ -0.4
LIN54-202ENST00000442461 CDCA7LQ96GN5 454 aa12.54□□□□□ -0.4
LIN54-202ENST00000442461 CFDP1Q9UEE9 299 aaPredicted RBP12.54□□□□□ -0.4
LIN54-202ENST00000442461 U2AF1L5P0DN76 240 aaPredicted RBP12.53□□□□□ -0.4
LIN54-202ENST00000442461 U2AF1Q01081 240 aaKnown RBP eCLIP12.53□□□□□ -0.4
LIN54-202ENST00000442461 TRIM6-TRIM34B2RNG4 842 aa12.53□□□□□ -0.4
LIN54-202ENST00000442461 SPDYE4A6NLX3 237 aa12.53□□□□□ -0.4
LIN54-202ENST00000442461 PAXIP1Q6ZW49 1069 aaPredicted RBP12.53□□□□□ -0.4
LIN54-202ENST00000442461 HMMRO75330 724 aa12.52□□□□□ -0.4
LIN54-202ENST00000442461 DDX19BQ9UMR2 479 aa12.52□□□□□ -0.4
LIN54-202ENST00000442461 PKD2Q13563 968 aa12.52□□□□□ -0.41
LIN54-202ENST00000442461 CCDC184Q52MB2 194 aa12.52□□□□□ -0.41
LIN54-202ENST00000442461 TRIM5Q9C035 493 aa12.52□□□□□ -0.41
LIN54-202ENST00000442461 FAM184AQ8NB25 1140 aa12.52□□□□□ -0.41
LIN54-202ENST00000442461 BRD4O60885 1362 aaPredicted RBP12.52□□□□□ -0.41
LIN54-202ENST00000442461 CCDC70Q6NSX1 233 aa12.51□□□□□ -0.41
LIN54-202ENST00000442461 HSP90AB3PQ58FF7 597 aa12.51□□□□□ -0.41
LIN54-202ENST00000442461 ST20-MTHFSA0A0A6YYL1 179 aa12.51□□□□□ -0.41
LIN54-202ENST00000442461 APAF1O14727 1248 aa12.51□□□□□ -0.41
LIN54-202ENST00000442461 GPATCH11Q8N954 259 aa12.51□□□□□ -0.41
LIN54-202ENST00000442461 SPC24Q8NBT2 197 aa12.5□□□□□ -0.41
LIN54-202ENST00000442461 PDZRN3Q9UPQ7 1066 aa12.5□□□□□ -0.41
LIN54-202ENST00000442461 CHMP3Q9Y3E7 222 aa12.5□□□□□ -0.41
LIN54-202ENST00000442461 FBLN2P98095 1184 aa12.49□□□□□ -0.41
LIN54-202ENST00000442461 GTF2A1P52655 376 aaPredicted RBP12.49□□□□□ -0.41
LIN54-202ENST00000442461 DZIP1LQ8IYY4 767 aaKnown RBP12.49□□□□□ -0.41
LIN54-202ENST00000442461 CCDC34Q96HJ3 373 aa12.49□□□□□ -0.41
LIN54-202ENST00000442461 PNISRQ8TF01 805 aaKnown RBP12.49□□□□□ -0.41
LIN54-202ENST00000442461 LNPKQ9C0E8 428 aa12.49□□□□□ -0.41
LIN54-202ENST00000442461 CWC22Q9HCG8 908 aaKnown RBP12.49□□□□□ -0.41
LIN54-202ENST00000442461 PANK1Q8TE04 598 aa12.48□□□□□ -0.41
LIN54-202ENST00000442461 ERCC4Q92889 916 aaPredicted RBP12.48□□□□□ -0.41
LIN54-202ENST00000442461 K7ELQ4 463 aaPredicted RBP12.48□□□□□ -0.41
LIN54-202ENST00000442461 SF3A1Q15459 793 aaKnown RBP12.48□□□□□ -0.41
LIN54-202ENST00000442461 USP47Q96K76 1375 aa12.48□□□□□ -0.41
LIN54-202ENST00000442461 RABEP1Q15276 862 aa12.48□□□□□ -0.41
LIN54-202ENST00000442461 RNF20Q5VTR2 975 aa12.48□□□□□ -0.41
LIN54-202ENST00000442461 TBC1D2Q9BYX2 928 aa12.48□□□□□ -0.41
LIN54-202ENST00000442461 PDE3AQ14432 1141 aa12.47□□□□□ -0.41
LIN54-202ENST00000442461 BICD2Q8TD16 824 aa12.47□□□□□ -0.41
LIN54-202ENST00000442461 HSP90B1P14625 803 aaKnown RBP12.47□□□□□ -0.41
LIN54-202ENST00000442461 TERF1P54274 439 aa12.47□□□□□ -0.41
LIN54-202ENST00000442461 INTS3Q68E01 1043 aaKnown RBP12.47□□□□□ -0.41
LIN54-202ENST00000442461 VGLL3A8MV65 326 aa12.46□□□□□ -0.41
LIN54-202ENST00000442461 PANK3Q9H999 370 aa12.46□□□□□ -0.41
LIN54-202ENST00000442461 GIMAP7Q8NHV1 300 aa12.46□□□□□ -0.41
LIN54-202ENST00000442461 GTF2F1P35269 517 aaKnown RBP eCLIP12.46□□□□□ -0.427e-6■■■■□ 21.3
LIN54-202ENST00000442461 GORABQ5T7V8 394 aa12.45□□□□□ -0.42
LIN54-202ENST00000442461 CDC45O75419 566 aa12.45□□□□□ -0.42
LIN54-202ENST00000442461 HS1BP3Q53T59 392 aa12.45□□□□□ -0.42
LIN54-202ENST00000442461 CCDC191Q8NCU4 936 aa12.45□□□□□ -0.42
LIN54-202ENST00000442461 SKAP1Q86WV1 359 aa12.45□□□□□ -0.42
LIN54-202ENST00000442461 KRT222Q8N1A0 295 aa12.44□□□□□ -0.42
LIN54-202ENST00000442461 RUFY1Q96T51 708 aa12.44□□□□□ -0.42
LIN54-202ENST00000442461 SYCE3A1L190 88 aa12.44□□□□□ -0.42
LIN54-202ENST00000442461 CTR9Q6PD62 1173 aa12.44□□□□□ -0.42
LIN54-202ENST00000442461 TMCO3Q6UWJ1 677 aa12.44□□□□□ -0.42
LIN54-202ENST00000442461 SMC3Q9UQE7 1217 aa12.44□□□□□ -0.42
LIN54-202ENST00000442461 ZKSCAN5Q9Y2L8 839 aa12.44□□□□□ -0.42
LIN54-202ENST00000442461 TPM1P09493 284 aa12.44□□□□□ -0.42
LIN54-202ENST00000442461 RRP7AQ9Y3A4 280 aaKnown RBP12.44□□□□□ -0.42
LIN54-202ENST00000442461 ABCC9O60706 1549 aa12.44□□□□□ -0.42
LIN54-202ENST00000442461 H3BQV1 296 aa12.43□□□□□ -0.42
LIN54-202ENST00000442461 CCP110O43303 1012 aa12.43□□□□□ -0.42
LIN54-202ENST00000442461 EIF3JO75822 258 aaKnown RBP12.43□□□□□ -0.42
LIN54-202ENST00000442461 IFFO2Q5TF58 517 aa12.43□□□□□ -0.42
LIN54-202ENST00000442461 CDR1P51861 262 aa12.43□□□□□ -0.42
LIN54-202ENST00000442461 IPO4Q8TEX9 1081 aaKnown RBP12.43□□□□□ -0.42
LIN54-202ENST00000442461 CCDC192P0DO97 292 aa12.43□□□□□ -0.42
LIN54-202ENST00000442461 MCM2P49736 904 aa12.43□□□□□ -0.42
LIN54-202ENST00000442461 TNPO1Q92973 898 aaKnown RBP12.43□□□□□ -0.42
LIN54-202ENST00000442461 STAG3Q9UJ98 1225 aa12.43□□□□□ -0.42
LIN54-202ENST00000442461 VPS37CA5D8V6 355 aaPredicted RBP12.42□□□□□ -0.42
LIN54-202ENST00000442461 KIAA0754O94854 1291 aa12.42□□□□□ -0.42
LIN54-202ENST00000442461 UBXN4Q92575 508 aa12.42□□□□□ -0.42
LIN54-202ENST00000442461 ABCC8Q09428 1581 aa12.42□□□□□ -0.42
LIN54-202ENST00000442461 IGSF3O75054 1194 aa12.42□□□□□ -0.42
LIN54-202ENST00000442461 NOL10Q9BSC4 688 aaKnown RBP12.42□□□□□ -0.42
LIN54-202ENST00000442461 TRIM34Q9BYJ4 488 aa12.41□□□□□ -0.42
LIN54-202ENST00000442461 SKIDA1Q1XH10 827 aa12.41□□□□□ -0.42
LIN54-202ENST00000442461 TSR1Q2NL82 804 aaKnown RBP12.41□□□□□ -0.42
LIN54-202ENST00000442461 RILPL2Q969X0 211 aa12.41□□□□□ -0.42
LIN54-202ENST00000442461 KLHL40Q2TBA0 621 aa12.41□□□□□ -0.42
LIN54-202ENST00000442461 FEZ1Q99689 392 aa12.41□□□□□ -0.42
LIN54-202ENST00000442461 KIF2AO00139 706 aaPredicted RBP12.4□□□□□ -0.42
LIN54-202ENST00000442461 ANKRD30AQ9BXX3 1397 aa12.4□□□□□ -0.42
LIN54-202ENST00000442461 CCDC18Q5T9S5 1454 aa12.4□□□□□ -0.42
LIN54-202ENST00000442461 ERLIN1O75477 346 aa12.4□□□□□ -0.43
LIN54-202ENST00000442461 NAT10Q9H0A0 1025 aaKnown RBP12.4□□□□□ -0.43
LIN54-202ENST00000442461 ANO2Q9NQ90 1003 aa12.4□□□□□ -0.43
LIN54-202ENST00000442461 DHX8Q14562 1220 aaKnown RBP12.39□□□□□ -0.43
LIN54-202ENST00000442461 BMS1Q14692 1282 aaKnown RBP12.39□□□□□ -0.43
LIN54-202ENST00000442461 AXDND1Q5T1B0 1012 aaPredicted RBP12.39□□□□□ -0.43
LIN54-202ENST00000442461 CCDC73Q6ZRK6 1079 aa12.39□□□□□ -0.43
LIN54-202ENST00000442461 POLR3GO15318 223 aaPredicted RBP12.38□□□□□ -0.43
LIN54-202ENST00000442461 NEK4P51957 841 aa12.38□□□□□ -0.43
LIN54-202ENST00000442461 PTPN14Q15678 1187 aa12.38□□□□□ -0.43
LIN54-202ENST00000442461 IPO7O95373 1038 aaKnown RBP12.38□□□□□ -0.43
LIN54-202ENST00000442461 DCTN1Q14203 1278 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms