RNA–Protein interactions for RNA: ENST00000440375.1

PDGFB-203, Transcript of platelet derived growth factor subunit B, humanhuman

TSL 4

Gene PDGFB, Length 556 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-203ENST00000440375 HSPA1LP34931 641 aa18.21■□□□□ 0.51
PDGFB-203ENST00000440375 RIMS2Q9UQ26 1411 aa18.21■□□□□ 0.51
PDGFB-203ENST00000440375 XIRP1Q702N8 1843 aaKnown RBP18.21■□□□□ 0.51
PDGFB-203ENST00000440375 NAIPQ13075 1403 aa18.19■□□□□ 0.5
PDGFB-203ENST00000440375 NWD1Q149M9 1564 aa18.17■□□□□ 0.5
PDGFB-203ENST00000440375 CHGAP10645 457 aaKnown RBP18.17■□□□□ 0.5
PDGFB-203ENST00000440375 PLEKHG1Q9ULL1 1385 aa18.17■□□□□ 0.5
PDGFB-203ENST00000440375 ILDR2Q71H61 639 aa18.16■□□□□ 0.5
PDGFB-203ENST00000440375 TMEM94Q12767 1356 aa18.16■□□□□ 0.5
PDGFB-203ENST00000440375 PPP1R15AO75807 674 aaPredicted RBP18.14■□□□□ 0.49
PDGFB-203ENST00000440375 KCNA6P17658 529 aa18.14■□□□□ 0.49
PDGFB-203ENST00000440375 NUTM2DQ5VT03 806 aaPredicted RBP18.14■□□□□ 0.49
PDGFB-203ENST00000440375 RBM33Q96EV2 1170 aaKnown RBP18.14■□□□□ 0.49
PDGFB-203ENST00000440375 BCANQ96GW7 911 aa18.14■□□□□ 0.49
PDGFB-203ENST00000440375 SPHKAPQ2M3C7 1700 aa18.14■□□□□ 0.49
PDGFB-203ENST00000440375 NKTRP30414 1462 aaKnown RBP18.14■□□□□ 0.49
PDGFB-203ENST00000440375 HFM1A2PYH4 1435 aa18.12■□□□□ 0.49
PDGFB-203ENST00000440375 ADAMTS13Q76LX8 1427 aa18.11■□□□□ 0.49
PDGFB-203ENST00000440375 MED1Q15648 1581 aaPredicted RBP18.1■□□□□ 0.49
PDGFB-203ENST00000440375 CLTCL1P53675 1640 aa18.09■□□□□ 0.49
PDGFB-203ENST00000440375 PROSER2Q86WR7 435 aaPredicted RBP18.09■□□□□ 0.49
PDGFB-203ENST00000440375 TRPM2O94759 1503 aa18.08■□□□□ 0.49
PDGFB-203ENST00000440375 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.08■□□□□ 0.48
PDGFB-203ENST00000440375 CHD2O14647 1828 aaKnown RBP18.07■□□□□ 0.48
PDGFB-203ENST00000440375 DIP2AQ14689 1571 aa18.07■□□□□ 0.48
PDGFB-203ENST00000440375 HDGFP51858 240 aaKnown RBP18.06■□□□□ 0.48
PDGFB-203ENST00000440375 NRXN3Q9Y4C0 1643 aa18.05■□□□□ 0.48
PDGFB-203ENST00000440375 TBX22Q9Y458 520 aa18.05■□□□□ 0.48
PDGFB-203ENST00000440375 FAM135BQ49AJ0 1406 aa18.02■□□□□ 0.48
PDGFB-203ENST00000440375 PTPRUQ92729 1446 aa18.02■□□□□ 0.48
PDGFB-203ENST00000440375 TRIM52Q96A61 297 aa18.02■□□□□ 0.48
PDGFB-203ENST00000440375 SETBP1Q9Y6X0 1596 aa18.02■□□□□ 0.48
PDGFB-203ENST00000440375 ROBO1Q9Y6N7 1651 aa18.02■□□□□ 0.47
PDGFB-203ENST00000440375 NEXMIFQ5QGS0 1516 aa18.02■□□□□ 0.47
PDGFB-203ENST00000440375 MSH6P52701 1360 aa18.01■□□□□ 0.47
PDGFB-203ENST00000440375 ZNF326Q5BKZ1 582 aaKnown RBP18■□□□□ 0.47
PDGFB-203ENST00000440375 PIK3R4Q99570 1358 aa17.99■□□□□ 0.47
PDGFB-203ENST00000440375 SLC4A1APQ9BWU0 796 aaKnown RBP17.98■□□□□ 0.47
PDGFB-203ENST00000440375 XRN1Q8IZH2 1706 aaKnown RBP17.98■□□□□ 0.47
PDGFB-203ENST00000440375 KIF1BO60333 1816 aa17.95■□□□□ 0.46
PDGFB-203ENST00000440375 METP08581 1390 aa17.95■□□□□ 0.46
PDGFB-203ENST00000440375 FOXD1Q16676 465 aa17.95■□□□□ 0.46
PDGFB-203ENST00000440375 AMOTL2Q9Y2J4 779 aa17.95■□□□□ 0.46
PDGFB-203ENST00000440375 SOCS7O14512 581 aa17.94■□□□□ 0.46
PDGFB-203ENST00000440375 NCOA3Q9Y6Q9 1424 aa17.94■□□□□ 0.46
PDGFB-203ENST00000440375 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.93■□□□□ 0.46
PDGFB-203ENST00000440375 C14orf37Q86TY3 774 aa17.93■□□□□ 0.46
PDGFB-203ENST00000440375 SLAIN2Q9P270 581 aa17.93■□□□□ 0.46
PDGFB-203ENST00000440375 SETD1AO15047 1707 aaKnown RBP17.89■□□□□ 0.46
PDGFB-203ENST00000440375 PHF23Q9BUL5 403 aaPredicted RBP17.89■□□□□ 0.45
PDGFB-203ENST00000440375 PHLPP1O60346 1717 aa17.89■□□□□ 0.45
PDGFB-203ENST00000440375 C19orf44Q9H6X5 657 aa17.88■□□□□ 0.45
PDGFB-203ENST00000440375 COL16A1Q07092 1604 aaPredicted RBP17.87■□□□□ 0.45
PDGFB-203ENST00000440375 PPLO60437 1756 aa17.87■□□□□ 0.45
PDGFB-203ENST00000440375 CADPS2Q86UW7 1296 aa17.86■□□□□ 0.45
PDGFB-203ENST00000440375 MPHOSPH9Q99550 1183 aa17.86■□□□□ 0.45
PDGFB-203ENST00000440375 CCDC144AA2RUR9 1427 aa17.85■□□□□ 0.45
PDGFB-203ENST00000440375 ATF3P18847 181 aa17.85■□□□□ 0.45
PDGFB-203ENST00000440375 DCCP43146 1447 aa17.85■□□□□ 0.45
PDGFB-203ENST00000440375 NALCNQ8IZF0 1738 aa17.85■□□□□ 0.45
PDGFB-203ENST00000440375 SPATA31E1Q6ZUB1 1445 aa17.84■□□□□ 0.45
PDGFB-203ENST00000440375 SETD5Q9C0A6 1442 aa17.84■□□□□ 0.45
PDGFB-203ENST00000440375 RGS17Q9UGC6 210 aaPredicted RBP17.84■□□□□ 0.45
PDGFB-203ENST00000440375 AHDC1Q5TGY3 1603 aaPredicted RBP17.83■□□□□ 0.45
PDGFB-203ENST00000440375 ADGRL3Q9HAR2 1447 aa17.83■□□□□ 0.45
PDGFB-203ENST00000440375 RPGRIP1LQ68CZ1 1315 aa17.83■□□□□ 0.44
PDGFB-203ENST00000440375 VGFO15240 615 aaPredicted RBP17.83■□□□□ 0.44
PDGFB-203ENST00000440375 MST1RQ04912 1400 aa17.82■□□□□ 0.44
PDGFB-203ENST00000440375 ROBO2Q9HCK4 1378 aa17.82■□□□□ 0.44
PDGFB-203ENST00000440375 PTCH1Q13635 1447 aa17.81■□□□□ 0.44
PDGFB-203ENST00000440375 BRINP3Q76B58 766 aa17.81■□□□□ 0.44
PDGFB-203ENST00000440375 ASXL1Q8IXJ9 1541 aa17.81■□□□□ 0.44
PDGFB-203ENST00000440375 RAB3GAP2Q9H2M9 1393 aa17.8■□□□□ 0.44
PDGFB-203ENST00000440375 JCADQ9P266 1359 aa17.8■□□□□ 0.44
PDGFB-203ENST00000440375 ADGRF5Q8IZF2 1346 aa17.8■□□□□ 0.44
PDGFB-203ENST00000440375 IFT172Q9UG01 1749 aa17.8■□□□□ 0.44
PDGFB-203ENST00000440375 PRAG1Q86YV5 1406 aa17.8■□□□□ 0.44
PDGFB-203ENST00000440375 RGL3Q3MIN7 710 aa17.79■□□□□ 0.44
PDGFB-203ENST00000440375 LRP6O75581 1613 aa17.78■□□□□ 0.44
PDGFB-203ENST00000440375 NHSL1Q5SYE7 1610 aa17.75■□□□□ 0.43
PDGFB-203ENST00000440375 ANKRD30BQ9BXX2 1392 aa17.74■□□□□ 0.43
PDGFB-203ENST00000440375 SHPRHQ149N8 1683 aa17.74■□□□□ 0.43
PDGFB-203ENST00000440375 PIK3C2GO75747 1445 aa17.73■□□□□ 0.43
PDGFB-203ENST00000440375 POTEAQ6S8J7 498 aa17.73■□□□□ 0.43
PDGFB-203ENST00000440375 DDX17Q92841 729 aaKnown RBP17.73■□□□□ 0.43
PDGFB-203ENST00000440375 C1orf167Q5SNV9 1468 aa17.73■□□□□ 0.43
PDGFB-203ENST00000440375 TECPR2O15040 1411 aa17.7■□□□□ 0.42
PDGFB-203ENST00000440375 SPATA31A6Q5VVP1 1343 aa17.7■□□□□ 0.42
PDGFB-203ENST00000440375 ACIN1Q9UKV3 1341 aaKnown RBP17.69■□□□□ 0.42
PDGFB-203ENST00000440375 NRXN1Q9ULB1 1477 aa17.69■□□□□ 0.42
PDGFB-203ENST00000440375 LRPPRCP42704 1394 aaKnown RBP17.68■□□□□ 0.42
PDGFB-203ENST00000440375 CDC42BPGQ6DT37 1551 aa17.68■□□□□ 0.42
PDGFB-203ENST00000440375 TMEM132EQ6IEE7 984 aa17.68■□□□□ 0.42
PDGFB-203ENST00000440375 STK26Q9P289 416 aa17.68■□□□□ 0.42
PDGFB-203ENST00000440375 MYOM2P54296 1465 aa17.68■□□□□ 0.42
PDGFB-203ENST00000440375 PLEKHH1Q9ULM0 1364 aa17.67■□□□□ 0.42
PDGFB-203ENST00000440375 KNDC1Q76NI1 1749 aa17.67■□□□□ 0.42
PDGFB-203ENST00000440375 ORAI2Q96SN7 254 aa17.67■□□□□ 0.42
PDGFB-203ENST00000440375 LAMC1P11047 1609 aa17.66■□□□□ 0.42
PDGFB-203ENST00000440375 YTHDC2Q9H6S0 1430 aaKnown RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms