RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 STRCP1A6NGW2 1772 aa35.26■■■■□ 3.24
VARS-217ENST00000440048 HDGFP51858 240 aaKnown RBP35.26■■■■□ 3.24
VARS-217ENST00000440048 PPP1R15AO75807 674 aaPredicted RBP35.22■■■■□ 3.23
VARS-217ENST00000440048 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.22■■■■□ 3.23
VARS-217ENST00000440048 MPHOSPH9Q99550 1183 aa35.22■■■■□ 3.23
VARS-217ENST00000440048 ACIN1Q9UKV3 1341 aaKnown RBP35.22■■■■□ 3.23
VARS-217ENST00000440048 RAB3GAP2Q9H2M9 1393 aa35.22■■■■□ 3.23
VARS-217ENST00000440048 PLEKHG1Q9ULL1 1385 aa35.21■■■■□ 3.23
VARS-217ENST00000440048 FOXD1Q16676 465 aa35.2■■■■□ 3.23
VARS-217ENST00000440048 SLC26A8Q96RN1 970 aa35.2■■■■□ 3.23
VARS-217ENST00000440048 UBAP1LF5GYI3 381 aa35.19■■■■□ 3.22
VARS-217ENST00000440048 KIF1BO60333 1816 aa35.19■■■■□ 3.22
VARS-217ENST00000440048 NUTM2DQ5VT03 806 aaPredicted RBP35.19■■■■□ 3.22
VARS-217ENST00000440048 BCANQ96GW7 911 aa35.19■■■■□ 3.22
VARS-217ENST00000440048 SENP3Q9H4L4 574 aaPredicted RBP35.18■■■■□ 3.22
VARS-217ENST00000440048 ZNF326Q5BKZ1 582 aaKnown RBP35.14■■■■□ 3.22
VARS-217ENST00000440048 LRRC7Q96NW7 1537 aa35.11■■■■□ 3.21
VARS-217ENST00000440048 TOM1O60784 492 aa35.08■■■■□ 3.21
VARS-217ENST00000440048 KCNA6P17658 529 aa35.07■■■■□ 3.2
VARS-217ENST00000440048 NEXMIFQ5QGS0 1516 aa35.06■■■■□ 3.2
VARS-217ENST00000440048 TBX22Q9Y458 520 aa35.05■■■■□ 3.2
VARS-217ENST00000440048 ADAMTS13Q76LX8 1427 aa35.05■■■■□ 3.2
VARS-217ENST00000440048 CCDC144AA2RUR9 1427 aa35.02■■■■□ 3.2
VARS-217ENST00000440048 HRCP23327 699 aa35.02■■■■□ 3.2
VARS-217ENST00000440048 DIP2AQ14689 1571 aa35.01■■■■□ 3.2
VARS-217ENST00000440048 NWD1Q149M9 1564 aa35.01■■■■□ 3.2
VARS-217ENST00000440048 CHD2O14647 1828 aaKnown RBP35.01■■■■□ 3.19
VARS-217ENST00000440048 XIRP1Q702N8 1843 aaKnown RBP34.99■■■■□ 3.19
VARS-217ENST00000440048 NRXN3Q9Y4C0 1643 aa34.98■■■■□ 3.19
VARS-217ENST00000440048 SETBP1Q9Y6X0 1596 aa34.97■■■■□ 3.19
VARS-217ENST00000440048 NKTRP30414 1462 aaKnown RBP34.95■■■■□ 3.19
VARS-217ENST00000440048 RPGRIP1LQ68CZ1 1315 aa34.94■■■■□ 3.18
VARS-217ENST00000440048 PROSER2Q86WR7 435 aaPredicted RBP34.93■■■■□ 3.18
VARS-217ENST00000440048 PIK3R4Q99570 1358 aa34.92■■■■□ 3.18
VARS-217ENST00000440048 PPLO60437 1756 aa34.92■■■■□ 3.18
VARS-217ENST00000440048 TMEM94Q12767 1356 aa34.91■■■■□ 3.18
VARS-217ENST00000440048 ALKQ9UM73 1620 aa34.91■■■■□ 3.18
VARS-217ENST00000440048 SPATA31E1Q6ZUB1 1445 aa34.9■■■■□ 3.18
VARS-217ENST00000440048 SCAF1Q9H7N4 1312 aaKnown RBP34.9■■■■□ 3.18
VARS-217ENST00000440048 VGFO15240 615 aaPredicted RBP34.89■■■■□ 3.18
VARS-217ENST00000440048 PIP4K2BP78356 416 aa34.89■■■■□ 3.18
VARS-217ENST00000440048 RBM33Q96EV2 1170 aaKnown RBP34.87■■■■□ 3.17
VARS-217ENST00000440048 RGL3Q3MIN7 710 aa34.86■■■■□ 3.17
VARS-217ENST00000440048 PTPRUQ92729 1446 aa34.84■■■■□ 3.17
VARS-217ENST00000440048 ANKRD30BQ9BXX2 1392 aa34.82■■■■□ 3.16
VARS-217ENST00000440048 AMOTL2Q9Y2J4 779 aa34.81■■■■□ 3.16
VARS-217ENST00000440048 METP08581 1390 aa34.81■■■■□ 3.16
VARS-217ENST00000440048 IFT172Q9UG01 1749 aa34.81■■■■□ 3.16
VARS-217ENST00000440048 XRN1Q8IZH2 1706 aaKnown RBP34.77■■■■□ 3.16
VARS-217ENST00000440048 SETD1AO15047 1707 aaKnown RBP34.76■■■■□ 3.16
VARS-217ENST00000440048 HSPA1LP34931 641 aa34.75■■■■□ 3.15
VARS-217ENST00000440048 ADGRF5Q8IZF2 1346 aa34.75■■■■□ 3.15
VARS-217ENST00000440048 DISP3Q9P2K9 1392 aa34.74■■■■□ 3.15
VARS-217ENST00000440048 MSH6P52701 1360 aa34.72■■■■□ 3.15
VARS-217ENST00000440048 NCOA3Q9Y6Q9 1424 aa34.72■■■■□ 3.15
VARS-217ENST00000440048 C14orf37Q86TY3 774 aa34.65■■■■□ 3.14
VARS-217ENST00000440048 PIK3C2GO75747 1445 aa34.62■■■■□ 3.13
VARS-217ENST00000440048 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.61■■■■□ 3.13
VARS-217ENST00000440048 C19orf44Q9H6X5 657 aa34.6■■■■□ 3.13
VARS-217ENST00000440048 MYOM2P54296 1465 aa34.59■■■■□ 3.13
VARS-217ENST00000440048 FAM135BQ49AJ0 1406 aa34.58■■■■□ 3.13
VARS-217ENST00000440048 TRIM26Q12899 539 aaPredicted RBP34.58■■■■□ 3.13
VARS-217ENST00000440048 NRXN1Q9ULB1 1477 aa34.57■■■■□ 3.12
VARS-217ENST00000440048 PTCH1Q13635 1447 aa34.55■■■■□ 3.12
VARS-217ENST00000440048 SLAIN2Q9P270 581 aa34.55■■■■□ 3.12
VARS-217ENST00000440048 PRAG1Q86YV5 1406 aa34.55■■■■□ 3.12
VARS-217ENST00000440048 ROBO1Q9Y6N7 1651 aa34.54■■■■□ 3.12
VARS-217ENST00000440048 ROBO2Q9HCK4 1378 aa34.53■■■■□ 3.12
VARS-217ENST00000440048 ATF3P18847 181 aa34.52■■■■□ 3.12
VARS-217ENST00000440048 CADPS2Q86UW7 1296 aa34.52■■■■□ 3.12
VARS-217ENST00000440048 ASXL1Q8IXJ9 1541 aa34.51■■■■□ 3.12
VARS-217ENST00000440048 C14orf93Q9H972 538 aaKnown RBP34.5■■■■□ 3.11
VARS-217ENST00000440048 TMEM132EQ6IEE7 984 aa34.49■■■■□ 3.11
VARS-217ENST00000440048 DCCP43146 1447 aa34.48■■■■□ 3.11
VARS-217ENST00000440048 ADGRL3Q9HAR2 1447 aa34.48■■■■□ 3.11
VARS-217ENST00000440048 NALCNQ8IZF0 1738 aa34.48■■■■□ 3.11
VARS-217ENST00000440048 DCAF11Q8TEB1 546 aa34.48■■■■□ 3.11
VARS-217ENST00000440048 KDM2AQ9Y2K7 1162 aa34.47■■■■□ 3.11
VARS-217ENST00000440048 LAMC1P11047 1609 aa34.47■■■■□ 3.11
VARS-217ENST00000440048 DHX57Q6P158 1386 aaKnown RBP34.47■■■■□ 3.11
VARS-217ENST00000440048 CFAP70Q5T0N1 1121 aa34.46■■■■□ 3.11
VARS-217ENST00000440048 STK26Q9P289 416 aa34.46■■■■□ 3.11
VARS-217ENST00000440048 LRPPRCP42704 1394 aaKnown RBP34.46■■■■□ 3.11
VARS-217ENST00000440048 MED1Q15648 1581 aaPredicted RBP34.43■■■■□ 3.1
VARS-217ENST00000440048 KNDC1Q76NI1 1749 aa34.42■■■■□ 3.1
VARS-217ENST00000440048 TECPR2O15040 1411 aa34.42■■■■□ 3.1
VARS-217ENST00000440048 STAC3Q96MF2 364 aa34.42■■■■□ 3.1
VARS-217ENST00000440048 YTHDC2Q9H6S0 1430 aaKnown RBP34.41■■■■□ 3.1
VARS-217ENST00000440048 ABCC11Q96J66 1382 aa34.41■■■■□ 3.1
VARS-217ENST00000440048 ILDR2Q71H61 639 aa34.39■■■■□ 3.1
VARS-217ENST00000440048 MST1RQ04912 1400 aa34.38■■■■□ 3.09
VARS-217ENST00000440048 WAPLQ7Z5K2 1190 aa34.34■■■■□ 3.09
VARS-217ENST00000440048 PHLPP1O60346 1717 aa34.33■■■■□ 3.09
VARS-217ENST00000440048 BRINP3Q76B58 766 aa34.31■■■■□ 3.08
VARS-217ENST00000440048 PLEKHH1Q9ULM0 1364 aa34.31■■■■□ 3.08
VARS-217ENST00000440048 ADGRB1O14514 1584 aa34.31■■■■□ 3.08
VARS-217ENST00000440048 SIN3AQ96ST3 1273 aa34.3■■■■□ 3.08
VARS-217ENST00000440048 SIRT1Q96EB6 747 aa34.29■■■■□ 3.08
VARS-217ENST00000440048 PHF23Q9BUL5 403 aaPredicted RBP34.26■■■■□ 3.08
VARS-217ENST00000440048 AHDC1Q5TGY3 1603 aaPredicted RBP34.26■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms