RNA–Protein interactions for RNA: ENST00000439775.1

SNRPD3-204, Transcript of small nuclear ribonucleoprotein D3 polypeptide, humanhuman

TSL 3

Gene SNRPD3, Length 640 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPD3-204ENST00000439775 NWD1Q149M9 1564 aa24.74■■□□□ 1.55
SNRPD3-204ENST00000439775 NAIPQ13075 1403 aa24.73■■□□□ 1.55
SNRPD3-204ENST00000439775 HDGFP51858 240 aaKnown RBP24.73■■□□□ 1.55
SNRPD3-204ENST00000439775 KCNA6P17658 529 aa24.72■■□□□ 1.55
SNRPD3-204ENST00000439775 SLC26A8Q96RN1 970 aa24.72■■□□□ 1.55
SNRPD3-204ENST00000439775 NKTRP30414 1462 aaKnown RBP24.71■■□□□ 1.55
SNRPD3-204ENST00000439775 XIRP1Q702N8 1843 aaKnown RBP24.71■■□□□ 1.55
SNRPD3-204ENST00000439775 HSPA1LP34931 641 aa24.71■■□□□ 1.55
SNRPD3-204ENST00000439775 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.69■■□□□ 1.54
SNRPD3-204ENST00000439775 PPP1R15AO75807 674 aaPredicted RBP24.68■■□□□ 1.54
SNRPD3-204ENST00000439775 SPHKAPQ2M3C7 1700 aa24.68■■□□□ 1.54
SNRPD3-204ENST00000439775 HFM1A2PYH4 1435 aa24.68■■□□□ 1.54
SNRPD3-204ENST00000439775 CHGAP10645 457 aaKnown RBP24.67■■□□□ 1.54
SNRPD3-204ENST00000439775 TMEM94Q12767 1356 aa24.67■■□□□ 1.54
SNRPD3-204ENST00000439775 DIP2AQ14689 1571 aa24.65■■□□□ 1.54
SNRPD3-204ENST00000439775 BCANQ96GW7 911 aa24.65■■□□□ 1.54
SNRPD3-204ENST00000439775 ADAMTS13Q76LX8 1427 aa24.61■■□□□ 1.53
SNRPD3-204ENST00000439775 TRPM2O94759 1503 aa24.61■■□□□ 1.53
SNRPD3-204ENST00000439775 TBX22Q9Y458 520 aa24.61■■□□□ 1.53
SNRPD3-204ENST00000439775 PROSER2Q86WR7 435 aaPredicted RBP24.6■■□□□ 1.53
SNRPD3-204ENST00000439775 CHD2O14647 1828 aaKnown RBP24.6■■□□□ 1.53
SNRPD3-204ENST00000439775 PIK3R4Q99570 1358 aa24.58■■□□□ 1.53
SNRPD3-204ENST00000439775 ILDR2Q71H61 639 aa24.58■■□□□ 1.53
SNRPD3-204ENST00000439775 MED1Q15648 1581 aaPredicted RBP24.58■■□□□ 1.52
SNRPD3-204ENST00000439775 SENP3Q9H4L4 574 aaPredicted RBP24.57■■□□□ 1.52
SNRPD3-204ENST00000439775 FAM135BQ49AJ0 1406 aa24.57■■□□□ 1.52
SNRPD3-204ENST00000439775 CLTCL1P53675 1640 aa24.57■■□□□ 1.52
SNRPD3-204ENST00000439775 NUTM2DQ5VT03 806 aaPredicted RBP24.55■■□□□ 1.52
SNRPD3-204ENST00000439775 NCOA3Q9Y6Q9 1424 aa24.54■■□□□ 1.52
SNRPD3-204ENST00000439775 SETBP1Q9Y6X0 1596 aa24.54■■□□□ 1.52
SNRPD3-204ENST00000439775 MSH6P52701 1360 aa24.54■■□□□ 1.52
SNRPD3-204ENST00000439775 RBM33Q96EV2 1170 aaKnown RBP24.52■■□□□ 1.52
SNRPD3-204ENST00000439775 NRXN3Q9Y4C0 1643 aa24.51■■□□□ 1.51
SNRPD3-204ENST00000439775 TRIM52Q96A61 297 aa24.49■■□□□ 1.51
SNRPD3-204ENST00000439775 NEXMIFQ5QGS0 1516 aa24.49■■□□□ 1.51
SNRPD3-204ENST00000439775 ZNF326Q5BKZ1 582 aaKnown RBP24.48■■□□□ 1.51
SNRPD3-204ENST00000439775 ROBO1Q9Y6N7 1651 aa24.48■■□□□ 1.51
SNRPD3-204ENST00000439775 SLC4A1APQ9BWU0 796 aaKnown RBP24.46■■□□□ 1.51
SNRPD3-204ENST00000439775 KIF1BO60333 1816 aa24.46■■□□□ 1.51
SNRPD3-204ENST00000439775 PTPRUQ92729 1446 aa24.45■■□□□ 1.51
SNRPD3-204ENST00000439775 XRN1Q8IZH2 1706 aaKnown RBP24.44■■□□□ 1.5
SNRPD3-204ENST00000439775 SOCS7O14512 581 aa24.42■■□□□ 1.5
SNRPD3-204ENST00000439775 AMOTL2Q9Y2J4 779 aa24.42■■□□□ 1.5
SNRPD3-204ENST00000439775 SLAIN2Q9P270 581 aa24.41■■□□□ 1.5
SNRPD3-204ENST00000439775 METP08581 1390 aa24.39■■□□□ 1.49
SNRPD3-204ENST00000439775 C14orf37Q86TY3 774 aa24.38■■□□□ 1.49
SNRPD3-204ENST00000439775 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.38■■□□□ 1.49
SNRPD3-204ENST00000439775 C19orf44Q9H6X5 657 aa24.37■■□□□ 1.49
SNRPD3-204ENST00000439775 DCCP43146 1447 aa24.36■■□□□ 1.49
SNRPD3-204ENST00000439775 CADPS2Q86UW7 1296 aa24.36■■□□□ 1.49
SNRPD3-204ENST00000439775 RPGRIP1LQ68CZ1 1315 aa24.35■■□□□ 1.49
SNRPD3-204ENST00000439775 VGFO15240 615 aaPredicted RBP24.34■■□□□ 1.49
SNRPD3-204ENST00000439775 PHF23Q9BUL5 403 aaPredicted RBP24.34■■□□□ 1.49
SNRPD3-204ENST00000439775 ACIN1Q9UKV3 1341 aaKnown RBP24.34■■□□□ 1.49
SNRPD3-204ENST00000439775 ATF3P18847 181 aa24.32■■□□□ 1.48
SNRPD3-204ENST00000439775 CCDC144AA2RUR9 1427 aa24.32■■□□□ 1.48
SNRPD3-204ENST00000439775 PHLPP1O60346 1717 aa24.32■■□□□ 1.48
SNRPD3-204ENST00000439775 SETD1AO15047 1707 aaKnown RBP24.31■■□□□ 1.48
SNRPD3-204ENST00000439775 PPLO60437 1756 aa24.31■■□□□ 1.48
SNRPD3-204ENST00000439775 FOXD1Q16676 465 aa24.3■■□□□ 1.48
SNRPD3-204ENST00000439775 MPHOSPH9Q99550 1183 aa24.3■■□□□ 1.48
SNRPD3-204ENST00000439775 PRAG1Q86YV5 1406 aa24.29■■□□□ 1.48
SNRPD3-204ENST00000439775 COL16A1Q07092 1604 aaPredicted RBP24.28■■□□□ 1.48
SNRPD3-204ENST00000439775 AHDC1Q5TGY3 1603 aaPredicted RBP24.28■■□□□ 1.48
SNRPD3-204ENST00000439775 PTCH1Q13635 1447 aa24.28■■□□□ 1.48
SNRPD3-204ENST00000439775 SETD5Q9C0A6 1442 aa24.27■■□□□ 1.48
SNRPD3-204ENST00000439775 ADGRL3Q9HAR2 1447 aa24.27■■□□□ 1.48
SNRPD3-204ENST00000439775 SPATA31E1Q6ZUB1 1445 aa24.27■■□□□ 1.48
SNRPD3-204ENST00000439775 JCADQ9P266 1359 aa24.26■■□□□ 1.47
SNRPD3-204ENST00000439775 MST1RQ04912 1400 aa24.24■■□□□ 1.47
SNRPD3-204ENST00000439775 NALCNQ8IZF0 1738 aa24.23■■□□□ 1.47
SNRPD3-204ENST00000439775 BRINP3Q76B58 766 aa24.21■■□□□ 1.47
SNRPD3-204ENST00000439775 ASXL1Q8IXJ9 1541 aa24.2■■□□□ 1.47
SNRPD3-204ENST00000439775 ANKRD30BQ9BXX2 1392 aa24.2■■□□□ 1.46
SNRPD3-204ENST00000439775 IFT172Q9UG01 1749 aa24.2■■□□□ 1.46
SNRPD3-204ENST00000439775 ROBO2Q9HCK4 1378 aa24.19■■□□□ 1.46
SNRPD3-204ENST00000439775 RGS17Q9UGC6 210 aaPredicted RBP24.19■■□□□ 1.46
SNRPD3-204ENST00000439775 RAB3GAP2Q9H2M9 1393 aa24.18■■□□□ 1.46
SNRPD3-204ENST00000439775 ADGRF5Q8IZF2 1346 aa24.15■■□□□ 1.46
SNRPD3-204ENST00000439775 SHPRHQ149N8 1683 aa24.15■■□□□ 1.46
SNRPD3-204ENST00000439775 RGL3Q3MIN7 710 aa24.15■■□□□ 1.46
SNRPD3-204ENST00000439775 SPATA31A6Q5VVP1 1343 aa24.14■■□□□ 1.46
SNRPD3-204ENST00000439775 NHSL1Q5SYE7 1610 aa24.14■■□□□ 1.46
SNRPD3-204ENST00000439775 PIK3C2GO75747 1445 aa24.14■■□□□ 1.45
SNRPD3-204ENST00000439775 TECPR2O15040 1411 aa24.11■■□□□ 1.45
SNRPD3-204ENST00000439775 C1orf167Q5SNV9 1468 aa24.11■■□□□ 1.45
SNRPD3-204ENST00000439775 LRP6O75581 1613 aa24.1■■□□□ 1.45
SNRPD3-204ENST00000439775 MYOM2P54296 1465 aa24.08■■□□□ 1.45
SNRPD3-204ENST00000439775 CDC42BPGQ6DT37 1551 aa24.08■■□□□ 1.44
SNRPD3-204ENST00000439775 NRXN1Q9ULB1 1477 aa24.07■■□□□ 1.44
SNRPD3-204ENST00000439775 LAMC1P11047 1609 aa24.07■■□□□ 1.44
SNRPD3-204ENST00000439775 LRPPRCP42704 1394 aaKnown RBP24.07■■□□□ 1.44
SNRPD3-204ENST00000439775 KNDC1Q76NI1 1749 aa24.07■■□□□ 1.44
SNRPD3-204ENST00000439775 POTEAQ6S8J7 498 aa24.05■■□□□ 1.44
SNRPD3-204ENST00000439775 ABCC11Q96J66 1382 aa24.04■■□□□ 1.44
SNRPD3-204ENST00000439775 HRCP23327 699 aa24.04■■□□□ 1.44
SNRPD3-204ENST00000439775 LRRC59Q96AG4 307 aaKnown RBP24.02■■□□□ 1.44
SNRPD3-204ENST00000439775 YTHDC2Q9H6S0 1430 aaKnown RBP24.01■■□□□ 1.43
SNRPD3-204ENST00000439775 MEX3CQ5U5Q3 659 aaKnown RBP23.99■■□□□ 1.43
SNRPD3-204ENST00000439775 TMEM132EQ6IEE7 984 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms