RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.92■■■■□ 3.5
RAPGEF1-206ENST00000438647 TRPM2O94759 1503 aa36.91■■■■□ 3.5
RAPGEF1-206ENST00000438647 SETD5Q9C0A6 1442 aa36.9■■■■□ 3.5
RAPGEF1-206ENST00000438647 BCANQ96GW7 911 aa36.86■■■■□ 3.49
RAPGEF1-206ENST00000438647 PLEKHG1Q9ULL1 1385 aa36.86■■■■□ 3.49
RAPGEF1-206ENST00000438647 SLC26A8Q96RN1 970 aa36.82■■■■□ 3.48
RAPGEF1-206ENST00000438647 CLTCL1P53675 1640 aa36.81■■■■□ 3.48
RAPGEF1-206ENST00000438647 STRCP1A6NGW2 1772 aa36.78■■■■□ 3.48
RAPGEF1-206ENST00000438647 UBAP1LF5GYI3 381 aa36.78■■■■□ 3.48
RAPGEF1-206ENST00000438647 ZNF326Q5BKZ1 582 aaKnown RBP36.78■■■■□ 3.48
RAPGEF1-206ENST00000438647 MPHOSPH9Q99550 1183 aa36.78■■■■□ 3.48
RAPGEF1-206ENST00000438647 LRRC7Q96NW7 1537 aa36.75■■■■□ 3.47
RAPGEF1-206ENST00000438647 RAB3GAP2Q9H2M9 1393 aa36.75■■■■□ 3.47
RAPGEF1-206ENST00000438647 KCNA6P17658 529 aa36.73■■■■□ 3.47
RAPGEF1-206ENST00000438647 NUTM2DQ5VT03 806 aaPredicted RBP36.73■■■■□ 3.47
RAPGEF1-206ENST00000438647 KIF1BO60333 1816 aa36.73■■■■□ 3.47
RAPGEF1-206ENST00000438647 FOXD1Q16676 465 aa36.7■■■■□ 3.47
RAPGEF1-206ENST00000438647 SENP3Q9H4L4 574 aaPredicted RBP36.7■■■■□ 3.47
RAPGEF1-206ENST00000438647 TBX22Q9Y458 520 aa36.7■■■■□ 3.47
RAPGEF1-206ENST00000438647 TOM1O60784 492 aa36.69■■■■□ 3.46
RAPGEF1-206ENST00000438647 DIP2AQ14689 1571 aa36.66■■■■□ 3.46
RAPGEF1-206ENST00000438647 CCDC144AA2RUR9 1427 aa36.65■■■■□ 3.46
RAPGEF1-206ENST00000438647 ADAMTS13Q76LX8 1427 aa36.64■■■■□ 3.46
RAPGEF1-206ENST00000438647 NWD1Q149M9 1564 aa36.64■■■■□ 3.46
RAPGEF1-206ENST00000438647 NKTRP30414 1462 aaKnown RBP36.63■■■■□ 3.45
RAPGEF1-206ENST00000438647 NEXMIFQ5QGS0 1516 aa36.62■■■■□ 3.45
RAPGEF1-206ENST00000438647 HRCP23327 699 aa36.61■■■■□ 3.45
RAPGEF1-206ENST00000438647 PIK3R4Q99570 1358 aa36.6■■■■□ 3.45
RAPGEF1-206ENST00000438647 RPGRIP1LQ68CZ1 1315 aa36.59■■■■□ 3.45
RAPGEF1-206ENST00000438647 SETBP1Q9Y6X0 1596 aa36.57■■■■□ 3.45
RAPGEF1-206ENST00000438647 PROSER2Q86WR7 435 aaPredicted RBP36.57■■■■□ 3.44
RAPGEF1-206ENST00000438647 TMEM94Q12767 1356 aa36.55■■■■□ 3.44
RAPGEF1-206ENST00000438647 CHD2O14647 1828 aaKnown RBP36.55■■■■□ 3.44
RAPGEF1-206ENST00000438647 VGFO15240 615 aaPredicted RBP36.54■■■■□ 3.44
RAPGEF1-206ENST00000438647 SCAF1Q9H7N4 1312 aaKnown RBP36.54■■■■□ 3.44
RAPGEF1-206ENST00000438647 PIP4K2BP78356 416 aa36.53■■■■□ 3.44
RAPGEF1-206ENST00000438647 XIRP1Q702N8 1843 aaKnown RBP36.5■■■■□ 3.43
RAPGEF1-206ENST00000438647 NRXN3Q9Y4C0 1643 aa36.5■■■■□ 3.43
RAPGEF1-206ENST00000438647 ALKQ9UM73 1620 aa36.45■■■■□ 3.43
RAPGEF1-206ENST00000438647 SPATA31E1Q6ZUB1 1445 aa36.45■■■■□ 3.43
RAPGEF1-206ENST00000438647 PPLO60437 1756 aa36.43■■■■□ 3.42
RAPGEF1-206ENST00000438647 RBM33Q96EV2 1170 aaKnown RBP36.42■■■■□ 3.42
RAPGEF1-206ENST00000438647 AMOTL2Q9Y2J4 779 aa36.42■■■■□ 3.42
RAPGEF1-206ENST00000438647 NCOA3Q9Y6Q9 1424 aa36.42■■■■□ 3.42
RAPGEF1-206ENST00000438647 RGL3Q3MIN7 710 aa36.41■■■■□ 3.42
RAPGEF1-206ENST00000438647 MSH6P52701 1360 aa36.4■■■■□ 3.42
RAPGEF1-206ENST00000438647 PTPRUQ92729 1446 aa36.39■■■■□ 3.42
RAPGEF1-206ENST00000438647 ANKRD30BQ9BXX2 1392 aa36.39■■■■□ 3.42
RAPGEF1-206ENST00000438647 METP08581 1390 aa36.38■■■■□ 3.41
RAPGEF1-206ENST00000438647 C14orf37Q86TY3 774 aa36.33■■■■□ 3.41
RAPGEF1-206ENST00000438647 XRN1Q8IZH2 1706 aaKnown RBP36.33■■■■□ 3.41
RAPGEF1-206ENST00000438647 HSPA1LP34931 641 aa36.3■■■■□ 3.4
RAPGEF1-206ENST00000438647 IFT172Q9UG01 1749 aa36.28■■■■□ 3.4
RAPGEF1-206ENST00000438647 ADGRF5Q8IZF2 1346 aa36.27■■■■□ 3.4
RAPGEF1-206ENST00000438647 C19orf44Q9H6X5 657 aa36.26■■■■□ 3.4
RAPGEF1-206ENST00000438647 FAM135BQ49AJ0 1406 aa36.25■■■■□ 3.39
RAPGEF1-206ENST00000438647 SETD1AO15047 1707 aaKnown RBP36.25■■■■□ 3.39
RAPGEF1-206ENST00000438647 CADPS2Q86UW7 1296 aa36.21■■■■□ 3.39
RAPGEF1-206ENST00000438647 ATF3P18847 181 aa36.2■■■■□ 3.39
RAPGEF1-206ENST00000438647 PIK3C2GO75747 1445 aa36.19■■■■□ 3.38
RAPGEF1-206ENST00000438647 SLAIN2Q9P270 581 aa36.19■■■■□ 3.38
RAPGEF1-206ENST00000438647 PTCH1Q13635 1447 aa36.18■■■■□ 3.38
RAPGEF1-206ENST00000438647 MYOM2P54296 1465 aa36.18■■■■□ 3.38
RAPGEF1-206ENST00000438647 PRAG1Q86YV5 1406 aa36.17■■■■□ 3.38
RAPGEF1-206ENST00000438647 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.16■■■■□ 3.38
RAPGEF1-206ENST00000438647 DCCP43146 1447 aa36.16■■■■□ 3.38
RAPGEF1-206ENST00000438647 ROBO1Q9Y6N7 1651 aa36.13■■■■□ 3.37
RAPGEF1-206ENST00000438647 NRXN1Q9ULB1 1477 aa36.11■■■■□ 3.37
RAPGEF1-206ENST00000438647 ADGRL3Q9HAR2 1447 aa36.1■■■■□ 3.37
RAPGEF1-206ENST00000438647 ROBO2Q9HCK4 1378 aa36.09■■■■□ 3.37
RAPGEF1-206ENST00000438647 STAC3Q96MF2 364 aa36.08■■■■□ 3.37
RAPGEF1-206ENST00000438647 C14orf93Q9H972 538 aaKnown RBP36.06■■■■□ 3.36
RAPGEF1-206ENST00000438647 LRPPRCP42704 1394 aaKnown RBP36.04■■■■□ 3.36
RAPGEF1-206ENST00000438647 TRIM26Q12899 539 aaPredicted RBP36.04■■■■□ 3.36
RAPGEF1-206ENST00000438647 LAMC1P11047 1609 aa36.04■■■■□ 3.36
RAPGEF1-206ENST00000438647 DISP3Q9P2K9 1392 aa36.02■■■■□ 3.36
RAPGEF1-206ENST00000438647 TECPR2O15040 1411 aa36.02■■■■□ 3.36
RAPGEF1-206ENST00000438647 DCAF11Q8TEB1 546 aa36.02■■■■□ 3.36
RAPGEF1-206ENST00000438647 TMEM132EQ6IEE7 984 aa36.01■■■■□ 3.36
RAPGEF1-206ENST00000438647 ASXL1Q8IXJ9 1541 aa36.01■■■■□ 3.36
RAPGEF1-206ENST00000438647 ABCC11Q96J66 1382 aa36.01■■■■□ 3.35
RAPGEF1-206ENST00000438647 NALCNQ8IZF0 1738 aa36■■■■□ 3.35
RAPGEF1-206ENST00000438647 STK26Q9P289 416 aa36■■■■□ 3.35
RAPGEF1-206ENST00000438647 CFAP70Q5T0N1 1121 aa35.99■■■■□ 3.35
RAPGEF1-206ENST00000438647 KDM2AQ9Y2K7 1162 aa35.98■■■■□ 3.35
RAPGEF1-206ENST00000438647 YTHDC2Q9H6S0 1430 aaKnown RBP35.98■■■■□ 3.35
RAPGEF1-206ENST00000438647 DHX57Q6P158 1386 aaKnown RBP35.96■■■■□ 3.35
RAPGEF1-206ENST00000438647 MST1RQ04912 1400 aa35.96■■■■□ 3.35
RAPGEF1-206ENST00000438647 KNDC1Q76NI1 1749 aa35.95■■■■□ 3.35
RAPGEF1-206ENST00000438647 BRINP3Q76B58 766 aa35.91■■■■□ 3.34
RAPGEF1-206ENST00000438647 PHLPP1O60346 1717 aa35.91■■■■□ 3.34
RAPGEF1-206ENST00000438647 SIRT1Q96EB6 747 aa35.89■■■■□ 3.34
RAPGEF1-206ENST00000438647 MED1Q15648 1581 aaPredicted RBP35.89■■■■□ 3.34
RAPGEF1-206ENST00000438647 WAPLQ7Z5K2 1190 aa35.87■■■■□ 3.33
RAPGEF1-206ENST00000438647 AHDC1Q5TGY3 1603 aaPredicted RBP35.86■■■■□ 3.33
RAPGEF1-206ENST00000438647 C1orf167Q5SNV9 1468 aa35.84■■■■□ 3.33
RAPGEF1-206ENST00000438647 CDC42BPGQ6DT37 1551 aa35.84■■■■□ 3.33
RAPGEF1-206ENST00000438647 ADGRB1O14514 1584 aa35.82■■■■□ 3.32
RAPGEF1-206ENST00000438647 PLEKHH1Q9ULM0 1364 aa35.81■■■■□ 3.32
RAPGEF1-206ENST00000438647 COL16A1Q07092 1604 aaPredicted RBP35.81■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms