RNA–Protein interactions for RNA: ENST00000434274.2

LIMS1-209, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 3

Gene LIMS1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-209ENST00000434274 LRRC7Q96NW7 1537 aa22.38■■□□□ 1.17
LIMS1-209ENST00000434274 RIMS2Q9UQ26 1411 aa22.38■■□□□ 1.17
LIMS1-209ENST00000434274 DIP2AQ14689 1571 aa22.38■■□□□ 1.17
LIMS1-209ENST00000434274 NKTRP30414 1462 aaKnown RBP22.37■■□□□ 1.17
LIMS1-209ENST00000434274 PPP1R15AO75807 674 aaPredicted RBP22.36■■□□□ 1.17
LIMS1-209ENST00000434274 NWD1Q149M9 1564 aa22.36■■□□□ 1.17
LIMS1-209ENST00000434274 TRPM2O94759 1503 aa22.35■■□□□ 1.17
LIMS1-209ENST00000434274 KCNA6P17658 529 aa22.31■■□□□ 1.16
LIMS1-209ENST00000434274 CHGAP10645 457 aaKnown RBP22.3■■□□□ 1.16
LIMS1-209ENST00000434274 PIK3R4Q99570 1358 aa22.29■■□□□ 1.16
LIMS1-209ENST00000434274 BCANQ96GW7 911 aa22.29■■□□□ 1.16
LIMS1-209ENST00000434274 KIF1BO60333 1816 aa22.29■■□□□ 1.16
LIMS1-209ENST00000434274 CHD2O14647 1828 aaKnown RBP22.26■■□□□ 1.15
LIMS1-209ENST00000434274 CLTCL1P53675 1640 aa22.25■■□□□ 1.15
LIMS1-209ENST00000434274 TRIM52Q96A61 297 aa22.25■■□□□ 1.15
LIMS1-209ENST00000434274 TBX22Q9Y458 520 aa22.25■■□□□ 1.15
LIMS1-209ENST00000434274 SCAF1Q9H7N4 1312 aaKnown RBP22.25■■□□□ 1.15
LIMS1-209ENST00000434274 XIRP1Q702N8 1843 aaKnown RBP22.24■■□□□ 1.15
LIMS1-209ENST00000434274 SLC26A8Q96RN1 970 aa22.24■■□□□ 1.15
LIMS1-209ENST00000434274 SETBP1Q9Y6X0 1596 aa22.23■■□□□ 1.15
LIMS1-209ENST00000434274 NCOA3Q9Y6Q9 1424 aa22.23■■□□□ 1.15
LIMS1-209ENST00000434274 ALKQ9UM73 1620 aa22.22■■□□□ 1.15
LIMS1-209ENST00000434274 SLC4A1APQ9BWU0 796 aaKnown RBP22.22■■□□□ 1.15
LIMS1-209ENST00000434274 TMEM94Q12767 1356 aa22.21■■□□□ 1.15
LIMS1-209ENST00000434274 PIP4K2BP78356 416 aa22.2■■□□□ 1.14
LIMS1-209ENST00000434274 ADAMTS13Q76LX8 1427 aa22.19■■□□□ 1.14
LIMS1-209ENST00000434274 MSH6P52701 1360 aa22.18■■□□□ 1.14
LIMS1-209ENST00000434274 ZNF326Q5BKZ1 582 aaKnown RBP22.18■■□□□ 1.14
LIMS1-209ENST00000434274 PROSER2Q86WR7 435 aaPredicted RBP22.18■■□□□ 1.14
LIMS1-209ENST00000434274 NEXMIFQ5QGS0 1516 aa22.16■■□□□ 1.14
LIMS1-209ENST00000434274 RPGRIP1LQ68CZ1 1315 aa22.14■■□□□ 1.14
LIMS1-209ENST00000434274 DISP3Q9P2K9 1392 aa22.13■■□□□ 1.13
LIMS1-209ENST00000434274 CCDC144AA2RUR9 1427 aa22.13■■□□□ 1.13
LIMS1-209ENST00000434274 FAM135BQ49AJ0 1406 aa22.13■■□□□ 1.13
LIMS1-209ENST00000434274 SETD5Q9C0A6 1442 aa22.13■■□□□ 1.13
LIMS1-209ENST00000434274 NRXN3Q9Y4C0 1643 aa22.13■■□□□ 1.13
LIMS1-209ENST00000434274 HSPA1LP34931 641 aa22.12■■□□□ 1.13
LIMS1-209ENST00000434274 XRN1Q8IZH2 1706 aaKnown RBP22.11■■□□□ 1.13
LIMS1-209ENST00000434274 VGFO15240 615 aaPredicted RBP22.1■■□□□ 1.13
LIMS1-209ENST00000434274 PPLO60437 1756 aa22.08■■□□□ 1.13
LIMS1-209ENST00000434274 NUTM2DQ5VT03 806 aaPredicted RBP22.08■■□□□ 1.13
LIMS1-209ENST00000434274 DCCP43146 1447 aa22.07■■□□□ 1.12
LIMS1-209ENST00000434274 MPHOSPH9Q99550 1183 aa22.06■■□□□ 1.12
LIMS1-209ENST00000434274 ROBO1Q9Y6N7 1651 aa22.05■■□□□ 1.12
LIMS1-209ENST00000434274 C14orf37Q86TY3 774 aa22.04■■□□□ 1.12
LIMS1-209ENST00000434274 MED1Q15648 1581 aaPredicted RBP22.04■■□□□ 1.12
LIMS1-209ENST00000434274 CADPS2Q86UW7 1296 aa22.03■■□□□ 1.12
LIMS1-209ENST00000434274 AMOTL2Q9Y2J4 779 aa22.03■■□□□ 1.12
LIMS1-209ENST00000434274 ANKRD30BQ9BXX2 1392 aa22.02■■□□□ 1.12
LIMS1-209ENST00000434274 C19orf44Q9H6X5 657 aa22.02■■□□□ 1.12
LIMS1-209ENST00000434274 PRAG1Q86YV5 1406 aa22.02■■□□□ 1.12
LIMS1-209ENST00000434274 RAB3GAP2Q9H2M9 1393 aa22■■□□□ 1.11
LIMS1-209ENST00000434274 SIPA1L2Q9P2F8 1722 aaPredicted RBP22■■□□□ 1.11
LIMS1-209ENST00000434274 PTCH1Q13635 1447 aa22■■□□□ 1.11
LIMS1-209ENST00000434274 PTPRUQ92729 1446 aa22■■□□□ 1.11
LIMS1-209ENST00000434274 SENP3Q9H4L4 574 aaPredicted RBP22■■□□□ 1.11
LIMS1-209ENST00000434274 SETD1AO15047 1707 aaKnown RBP22■■□□□ 1.11
LIMS1-209ENST00000434274 ATF3P18847 181 aa21.99■■□□□ 1.11
LIMS1-209ENST00000434274 SLAIN2Q9P270 581 aa21.99■■□□□ 1.11
LIMS1-209ENST00000434274 SPATA31E1Q6ZUB1 1445 aa21.98■■□□□ 1.11
LIMS1-209ENST00000434274 IFT172Q9UG01 1749 aa21.98■■□□□ 1.11
LIMS1-209ENST00000434274 HRCP23327 699 aa21.98■■□□□ 1.11
LIMS1-209ENST00000434274 METP08581 1390 aa21.97■■□□□ 1.11
LIMS1-209ENST00000434274 ADGRL3Q9HAR2 1447 aa21.95■■□□□ 1.1
LIMS1-209ENST00000434274 RBM33Q96EV2 1170 aaKnown RBP21.94■■□□□ 1.1
LIMS1-209ENST00000434274 PHLPP1O60346 1717 aa21.94■■□□□ 1.1
LIMS1-209ENST00000434274 LAMC1P11047 1609 aa21.92■■□□□ 1.1
LIMS1-209ENST00000434274 FOXD1Q16676 465 aa21.92■■□□□ 1.1
LIMS1-209ENST00000434274 AHDC1Q5TGY3 1603 aaPredicted RBP21.91■■□□□ 1.1
LIMS1-209ENST00000434274 MYOM2P54296 1465 aa21.9■■□□□ 1.1
LIMS1-209ENST00000434274 NALCNQ8IZF0 1738 aa21.89■■□□□ 1.1
LIMS1-209ENST00000434274 PHF23Q9BUL5 403 aaPredicted RBP21.89■■□□□ 1.09
LIMS1-209ENST00000434274 PIK3C2GO75747 1445 aa21.88■■□□□ 1.09
LIMS1-209ENST00000434274 JCADQ9P266 1359 aa21.87■■□□□ 1.09
LIMS1-209ENST00000434274 KNDC1Q76NI1 1749 aa21.86■■□□□ 1.09
LIMS1-209ENST00000434274 COL16A1Q07092 1604 aaPredicted RBP21.86■■□□□ 1.09
LIMS1-209ENST00000434274 RGL3Q3MIN7 710 aa21.85■■□□□ 1.09
LIMS1-209ENST00000434274 TECPR2O15040 1411 aa21.85■■□□□ 1.09
LIMS1-209ENST00000434274 MST1RQ04912 1400 aa21.85■■□□□ 1.09
LIMS1-209ENST00000434274 STAC3Q96MF2 364 aa21.84■■□□□ 1.09
LIMS1-209ENST00000434274 ASXL1Q8IXJ9 1541 aa21.84■■□□□ 1.09
LIMS1-209ENST00000434274 NRXN1Q9ULB1 1477 aa21.83■■□□□ 1.08
LIMS1-209ENST00000434274 CDC42BPGQ6DT37 1551 aa21.82■■□□□ 1.08
LIMS1-209ENST00000434274 ADGRF5Q8IZF2 1346 aa21.81■■□□□ 1.08
LIMS1-209ENST00000434274 LRPPRCP42704 1394 aaKnown RBP21.81■■□□□ 1.08
LIMS1-209ENST00000434274 ROBO2Q9HCK4 1378 aa21.81■■□□□ 1.08
LIMS1-209ENST00000434274 SHPRHQ149N8 1683 aa21.81■■□□□ 1.08
LIMS1-209ENST00000434274 NHSL1Q5SYE7 1610 aa21.8■■□□□ 1.08
LIMS1-209ENST00000434274 ABCC11Q96J66 1382 aa21.79■■□□□ 1.08
LIMS1-209ENST00000434274 BRINP3Q76B58 766 aa21.79■■□□□ 1.08
LIMS1-209ENST00000434274 SPATA31A6Q5VVP1 1343 aa21.79■■□□□ 1.08
LIMS1-209ENST00000434274 SOCS7O14512 581 aa21.78■■□□□ 1.08
LIMS1-209ENST00000434274 ILDR2Q71H61 639 aa21.77■■□□□ 1.08
LIMS1-209ENST00000434274 YTHDC2Q9H6S0 1430 aaKnown RBP21.75■■□□□ 1.07
LIMS1-209ENST00000434274 C1orf167Q5SNV9 1468 aa21.75■■□□□ 1.07
LIMS1-209ENST00000434274 SIRT1Q96EB6 747 aa21.74■■□□□ 1.07
LIMS1-209ENST00000434274 DHX57Q6P158 1386 aaKnown RBP21.74■■□□□ 1.07
LIMS1-209ENST00000434274 C14orf93Q9H972 538 aaKnown RBP21.73■■□□□ 1.07
LIMS1-209ENST00000434274 DLC1Q96QB1 1528 aa21.7■■□□□ 1.07
LIMS1-209ENST00000434274 LRRC59Q96AG4 307 aaKnown RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms