RNA–Protein interactions for RNA: ENST00000433541.1

TREX1-201, Transcript of three prime repair exonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene TREX1, Length 1,105 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1-201ENST00000433541 HDGFP51858 240 aaKnown RBP22.78■■□□□ 1.24
TREX1-201ENST00000433541 SENP3Q9H4L4 574 aaPredicted RBP22.78■■□□□ 1.24
TREX1-201ENST00000433541 RIMS2Q9UQ26 1411 aa22.77■■□□□ 1.24
TREX1-201ENST00000433541 NUTM2DQ5VT03 806 aaPredicted RBP22.76■■□□□ 1.23
TREX1-201ENST00000433541 LTKP29376 864 aa22.75■■□□□ 1.23
TREX1-201ENST00000433541 PCGF6Q9BYE7 350 aa22.75■■□□□ 1.23
TREX1-201ENST00000433541 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.74■■□□□ 1.23
TREX1-201ENST00000433541 MED14O60244 1454 aa22.73■■□□□ 1.23
TREX1-201ENST00000433541 ZFYVE9O95405 1425 aa22.71■■□□□ 1.23
TREX1-201ENST00000433541 RGL3Q3MIN7 710 aa22.69■■□□□ 1.22
TREX1-201ENST00000433541 PPLO60437 1756 aa22.66■■□□□ 1.22
TREX1-201ENST00000433541 ANKRD30BQ9BXX2 1392 aa22.66■■□□□ 1.22
TREX1-201ENST00000433541 NEXMIFQ5QGS0 1516 aa22.66■■□□□ 1.22
TREX1-201ENST00000433541 ZNF335Q9H4Z2 1342 aaPredicted RBP22.65■■□□□ 1.22
TREX1-201ENST00000433541 PLEKHG1Q9ULL1 1385 aa22.64■■□□□ 1.22
TREX1-201ENST00000433541 SLC26A8Q96RN1 970 aa22.64■■□□□ 1.21
TREX1-201ENST00000433541 RPGRIP1LQ68CZ1 1315 aa22.61■■□□□ 1.21
TREX1-201ENST00000433541 VGFO15240 615 aaPredicted RBP22.6■■□□□ 1.21
TREX1-201ENST00000433541 IFT172Q9UG01 1749 aa22.6■■□□□ 1.21
TREX1-201ENST00000433541 SPATA31E1Q6ZUB1 1445 aa22.59■■□□□ 1.21
TREX1-201ENST00000433541 DHX57Q6P158 1386 aaKnown RBP22.58■■□□□ 1.21
TREX1-201ENST00000433541 DIP2AQ14689 1571 aa22.57■■□□□ 1.2
TREX1-201ENST00000433541 LTBP4Q8N2S1 1624 aa22.55■■□□□ 1.2
TREX1-201ENST00000433541 STRCP1A6NGW2 1772 aa22.55■■□□□ 1.2
TREX1-201ENST00000433541 CERKQ8TCT0 537 aa22.54■■□□□ 1.2
TREX1-201ENST00000433541 SETBP1Q9Y6X0 1596 aa22.54■■□□□ 1.2
TREX1-201ENST00000433541 CPS1P31327 1500 aa22.53■■□□□ 1.2
TREX1-201ENST00000433541 NRXN3Q9Y4C0 1643 aa22.53■■□□□ 1.2
TREX1-201ENST00000433541 NEUROD1Q13562 356 aa22.52■■□□□ 1.2
TREX1-201ENST00000433541 ADAMTS13Q76LX8 1427 aa22.51■■□□□ 1.19
TREX1-201ENST00000433541 CHD2O14647 1828 aaKnown RBP22.51■■□□□ 1.19
TREX1-201ENST00000433541 KDM2AQ9Y2K7 1162 aa22.5■■□□□ 1.19
TREX1-201ENST00000433541 TBX22Q9Y458 520 aa22.5■■□□□ 1.19
TREX1-201ENST00000433541 DCAF11Q8TEB1 546 aa22.49■■□□□ 1.19
TREX1-201ENST00000433541 ADGRF5Q8IZF2 1346 aa22.48■■□□□ 1.19
TREX1-201ENST00000433541 KCNA6P17658 529 aa22.47■■□□□ 1.19
TREX1-201ENST00000433541 SIN3AQ96ST3 1273 aa22.47■■□□□ 1.19
TREX1-201ENST00000433541 ALKQ9UM73 1620 aa22.46■■□□□ 1.19
TREX1-201ENST00000433541 MYOM2P54296 1465 aa22.46■■□□□ 1.19
TREX1-201ENST00000433541 NWD1Q149M9 1564 aa22.45■■□□□ 1.18
TREX1-201ENST00000433541 SETD1AO15047 1707 aaKnown RBP22.43■■□□□ 1.18
TREX1-201ENST00000433541 PIK3R4Q99570 1358 aa22.43■■□□□ 1.18
TREX1-201ENST00000433541 PROSER2Q86WR7 435 aaPredicted RBP22.43■■□□□ 1.18
TREX1-201ENST00000433541 LAMC1P11047 1609 aa22.42■■□□□ 1.18
TREX1-201ENST00000433541 NKTRP30414 1462 aaKnown RBP22.42■■□□□ 1.18
TREX1-201ENST00000433541 LRRC7Q96NW7 1537 aa22.41■■□□□ 1.18
TREX1-201ENST00000433541 PIK3C2GO75747 1445 aa22.41■■□□□ 1.18
TREX1-201ENST00000433541 METP08581 1390 aa22.41■■□□□ 1.18
TREX1-201ENST00000433541 AMOTL2Q9Y2J4 779 aa22.41■■□□□ 1.18
TREX1-201ENST00000433541 C14orf37Q86TY3 774 aa22.4■■□□□ 1.18
TREX1-201ENST00000433541 IQSEC2Q5JU85 1478 aa22.4■■□□□ 1.18
TREX1-201ENST00000433541 XIRP1Q702N8 1843 aaKnown RBP22.39■■□□□ 1.17
TREX1-201ENST00000433541 XRN1Q8IZH2 1706 aaKnown RBP22.38■■□□□ 1.17
TREX1-201ENST00000433541 RBM33Q96EV2 1170 aaKnown RBP22.38■■□□□ 1.17
TREX1-201ENST00000433541 CCER1Q8TC90 406 aaPredicted RBP22.37■■□□□ 1.17
TREX1-201ENST00000433541 STAC3Q96MF2 364 aa22.37■■□□□ 1.17
TREX1-201ENST00000433541 PTPRUQ92729 1446 aa22.37■■□□□ 1.17
TREX1-201ENST00000433541 TONSLQ96HA7 1378 aa22.37■■□□□ 1.17
TREX1-201ENST00000433541 TMEM94Q12767 1356 aa22.36■■□□□ 1.17
TREX1-201ENST00000433541 NRXN1Q9ULB1 1477 aa22.35■■□□□ 1.17
TREX1-201ENST00000433541 UBAP1LF5GYI3 381 aa22.34■■□□□ 1.17
TREX1-201ENST00000433541 CFAP70Q5T0N1 1121 aa22.34■■□□□ 1.17
TREX1-201ENST00000433541 STK26Q9P289 416 aa22.34■■□□□ 1.17
TREX1-201ENST00000433541 SCAF1Q9H7N4 1312 aaKnown RBP22.33■■□□□ 1.17
TREX1-201ENST00000433541 TMEM132EQ6IEE7 984 aa22.33■■□□□ 1.17
TREX1-201ENST00000433541 L3MBTL2Q969R5 705 aa22.33■■□□□ 1.17
TREX1-201ENST00000433541 FBXO41Q8TF61 875 aa22.32■■□□□ 1.16
TREX1-201ENST00000433541 C14orf93Q9H972 538 aaKnown RBP22.31■■□□□ 1.16
TREX1-201ENST00000433541 MSH6P52701 1360 aa22.3■■□□□ 1.16
TREX1-201ENST00000433541 TOM1O60784 492 aa22.29■■□□□ 1.16
TREX1-201ENST00000433541 ASXL1Q8IXJ9 1541 aa22.29■■□□□ 1.16
TREX1-201ENST00000433541 KNDC1Q76NI1 1749 aa22.28■■□□□ 1.16
TREX1-201ENST00000433541 PIP4K2BP78356 416 aa22.27■■□□□ 1.16
TREX1-201ENST00000433541 YTHDC2Q9H6S0 1430 aaKnown RBP22.27■■□□□ 1.16
TREX1-201ENST00000433541 KIAA1210Q9ULL0 1709 aa22.26■■□□□ 1.15
TREX1-201ENST00000433541 PRAG1Q86YV5 1406 aa22.26■■□□□ 1.15
TREX1-201ENST00000433541 LRPPRCP42704 1394 aaKnown RBP22.25■■□□□ 1.15
TREX1-201ENST00000433541 PTCH1Q13635 1447 aa22.25■■□□□ 1.15
TREX1-201ENST00000433541 CLSPNQ9HAW4 1339 aa22.25■■□□□ 1.15
TREX1-201ENST00000433541 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.24■■□□□ 1.15
TREX1-201ENST00000433541 ROBO2Q9HCK4 1378 aa22.24■■□□□ 1.15
TREX1-201ENST00000433541 NALCNQ8IZF0 1738 aa22.23■■□□□ 1.15
TREX1-201ENST00000433541 NCOA3Q9Y6Q9 1424 aa22.23■■□□□ 1.15
TREX1-201ENST00000433541 ATF3P18847 181 aa22.22■■□□□ 1.15
TREX1-201ENST00000433541 ILDR1Q86SU0 546 aaPredicted RBP22.21■■□□□ 1.15
TREX1-201ENST00000433541 TRAK1Q9UPV9 953 aa22.21■■□□□ 1.15
TREX1-201ENST00000433541 ADGRB1O14514 1584 aa22.21■■□□□ 1.15
TREX1-201ENST00000433541 C19orf44Q9H6X5 657 aa22.2■■□□□ 1.14
TREX1-201ENST00000433541 ABCC11Q96J66 1382 aa22.2■■□□□ 1.14
TREX1-201ENST00000433541 TRPM1Q7Z4N2 1603 aa22.2■■□□□ 1.14
TREX1-201ENST00000433541 POGKQ9P215 609 aa22.19■■□□□ 1.14
TREX1-201ENST00000433541 TECPR2O15040 1411 aa22.19■■□□□ 1.14
TREX1-201ENST00000433541 ADGRL3Q9HAR2 1447 aa22.18■■□□□ 1.14
TREX1-201ENST00000433541 SAFB2Q14151 953 aaKnown RBP eCLIP22.18■■□□□ 1.14
TREX1-201ENST00000433541 WAPLQ7Z5K2 1190 aa22.18■■□□□ 1.14
TREX1-201ENST00000433541 CADPS2Q86UW7 1296 aa22.16■■□□□ 1.14
TREX1-201ENST00000433541 ROCK2O75116 1388 aaKnown RBP22.15■■□□□ 1.14
TREX1-201ENST00000433541 ARHGEF28Q8N1W1 1705 aaKnown RBP22.15■■□□□ 1.14
TREX1-201ENST00000433541 NBPF1Q3BBV0 1214 aa22.15■■□□□ 1.14
TREX1-201ENST00000433541 PRAM1Q96QH2 718 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms