RNA–Protein interactions for RNA: ENST00000430200.1

HDAC4-202, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-202ENST00000430200 NAIPQ13075 1403 aa18.14■□□□□ 0.49
HDAC4-202ENST00000430200 RIMS2Q9UQ26 1411 aa18.14■□□□□ 0.49
HDAC4-202ENST00000430200 HSPA1LP34931 641 aa18.13■□□□□ 0.49
HDAC4-202ENST00000430200 NKTRP30414 1462 aaKnown RBP18.13■□□□□ 0.49
HDAC4-202ENST00000430200 SENP3Q9H4L4 574 aaPredicted RBP18.12■□□□□ 0.49
HDAC4-202ENST00000430200 SCAF1Q9H7N4 1312 aaKnown RBP18.12■□□□□ 0.49
HDAC4-202ENST00000430200 NUP155O75694 1391 aa18.12■□□□□ 0.49
HDAC4-202ENST00000430200 ROBO1Q9Y6N7 1651 aa18.12■□□□□ 0.49
HDAC4-202ENST00000430200 SLC26A8Q96RN1 970 aa18.11■□□□□ 0.49
HDAC4-202ENST00000430200 STAG3Q9UJ98 1225 aa18.11■□□□□ 0.49
HDAC4-202ENST00000430200 DIP2AQ14689 1571 aa18.1■□□□□ 0.49
HDAC4-202ENST00000430200 TRPM2O94759 1503 aa18.1■□□□□ 0.49
HDAC4-202ENST00000430200 ADAMTS13Q76LX8 1427 aa18.1■□□□□ 0.49
HDAC4-202ENST00000430200 SLC52A1Q9NWF4 448 aa18.1■□□□□ 0.49
HDAC4-202ENST00000430200 EID1Q9Y6B2 187 aa18.1■□□□□ 0.49
HDAC4-202ENST00000430200 KIF1BO60333 1816 aa18.09■□□□□ 0.49
HDAC4-202ENST00000430200 PLEKHG1Q9ULL1 1385 aa18.09■□□□□ 0.49
HDAC4-202ENST00000430200 SETD1AO15047 1707 aaKnown RBP18.09■□□□□ 0.49
HDAC4-202ENST00000430200 XRN1Q8IZH2 1706 aaKnown RBP18.09■□□□□ 0.49
HDAC4-202ENST00000430200 TMEM94Q12767 1356 aa18.07■□□□□ 0.48
HDAC4-202ENST00000430200 TOM1O60784 492 aa18.07■□□□□ 0.48
HDAC4-202ENST00000430200 NEXMIFQ5QGS0 1516 aa18.07■□□□□ 0.48
HDAC4-202ENST00000430200 RBM33Q96EV2 1170 aaKnown RBP18.06■□□□□ 0.48
HDAC4-202ENST00000430200 SETBP1Q9Y6X0 1596 aa18.05■□□□□ 0.48
HDAC4-202ENST00000430200 HFM1A2PYH4 1435 aa18.05■□□□□ 0.48
HDAC4-202ENST00000430200 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.04■□□□□ 0.48
HDAC4-202ENST00000430200 NUTM2DQ5VT03 806 aaPredicted RBP18.03■□□□□ 0.48
HDAC4-202ENST00000430200 PPLO60437 1756 aa18.02■□□□□ 0.48
HDAC4-202ENST00000430200 PTPRUQ92729 1446 aa18.01■□□□□ 0.47
HDAC4-202ENST00000430200 KCNA6P17658 529 aa18.01■□□□□ 0.47
HDAC4-202ENST00000430200 NALCNQ8IZF0 1738 aa18.01■□□□□ 0.47
HDAC4-202ENST00000430200 PHLPP1O60346 1717 aa18■□□□□ 0.47
HDAC4-202ENST00000430200 IFT172Q9UG01 1749 aa18■□□□□ 0.47
HDAC4-202ENST00000430200 CHGAP10645 457 aaKnown RBP17.99■□□□□ 0.47
HDAC4-202ENST00000430200 COL16A1Q07092 1604 aaPredicted RBP17.98■□□□□ 0.47
HDAC4-202ENST00000430200 PPP1R15AO75807 674 aaPredicted RBP17.96■□□□□ 0.47
HDAC4-202ENST00000430200 PROSER2Q86WR7 435 aaPredicted RBP17.94■□□□□ 0.46
HDAC4-202ENST00000430200 FAM135BQ49AJ0 1406 aa17.94■□□□□ 0.46
HDAC4-202ENST00000430200 BCANQ96GW7 911 aa17.93■□□□□ 0.46
HDAC4-202ENST00000430200 TBX22Q9Y458 520 aa17.91■□□□□ 0.46
HDAC4-202ENST00000430200 METP08581 1390 aa17.9■□□□□ 0.46
HDAC4-202ENST00000430200 MSH6P52701 1360 aa17.9■□□□□ 0.46
HDAC4-202ENST00000430200 PIK3R4Q99570 1358 aa17.9■□□□□ 0.46
HDAC4-202ENST00000430200 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.89■□□□□ 0.45
HDAC4-202ENST00000430200 NHSL1Q5SYE7 1610 aa17.89■□□□□ 0.45
HDAC4-202ENST00000430200 AHDC1Q5TGY3 1603 aaPredicted RBP17.89■□□□□ 0.45
HDAC4-202ENST00000430200 SOCS7O14512 581 aa17.87■□□□□ 0.45
HDAC4-202ENST00000430200 SHPRHQ149N8 1683 aa17.87■□□□□ 0.45
HDAC4-202ENST00000430200 ASXL1Q8IXJ9 1541 aa17.85■□□□□ 0.45
HDAC4-202ENST00000430200 NCOA3Q9Y6Q9 1424 aa17.85■□□□□ 0.45
HDAC4-202ENST00000430200 FOXD1Q16676 465 aa17.84■□□□□ 0.45
HDAC4-202ENST00000430200 LRP6O75581 1613 aa17.83■□□□□ 0.44
HDAC4-202ENST00000430200 HDGFP51858 240 aaKnown RBP17.82■□□□□ 0.44
HDAC4-202ENST00000430200 ZNF326Q5BKZ1 582 aaKnown RBP17.82■□□□□ 0.44
HDAC4-202ENST00000430200 TRIM52Q96A61 297 aa17.82■□□□□ 0.44
HDAC4-202ENST00000430200 AMOTL2Q9Y2J4 779 aa17.81■□□□□ 0.44
HDAC4-202ENST00000430200 KNDC1Q76NI1 1749 aa17.81■□□□□ 0.44
HDAC4-202ENST00000430200 DCCP43146 1447 aa17.81■□□□□ 0.44
HDAC4-202ENST00000430200 MST1RQ04912 1400 aa17.81■□□□□ 0.44
HDAC4-202ENST00000430200 SPATA31E1Q6ZUB1 1445 aa17.81■□□□□ 0.44
HDAC4-202ENST00000430200 SLC4A1APQ9BWU0 796 aaKnown RBP17.8■□□□□ 0.44
HDAC4-202ENST00000430200 SLAIN2Q9P270 581 aa17.8■□□□□ 0.44
HDAC4-202ENST00000430200 RGS17Q9UGC6 210 aaPredicted RBP17.8■□□□□ 0.44
HDAC4-202ENST00000430200 PRAG1Q86YV5 1406 aa17.8■□□□□ 0.44
HDAC4-202ENST00000430200 ADGRL3Q9HAR2 1447 aa17.8■□□□□ 0.44
HDAC4-202ENST00000430200 LAMC1P11047 1609 aa17.79■□□□□ 0.44
HDAC4-202ENST00000430200 PTCH1Q13635 1447 aa17.78■□□□□ 0.44
HDAC4-202ENST00000430200 ROBO2Q9HCK4 1378 aa17.76■□□□□ 0.43
HDAC4-202ENST00000430200 CCDC144AA2RUR9 1427 aa17.74■□□□□ 0.43
HDAC4-202ENST00000430200 C14orf37Q86TY3 774 aa17.74■□□□□ 0.43
HDAC4-202ENST00000430200 PHF23Q9BUL5 403 aaPredicted RBP17.74■□□□□ 0.43
HDAC4-202ENST00000430200 C19orf44Q9H6X5 657 aa17.73■□□□□ 0.43
HDAC4-202ENST00000430200 CDC42BPGQ6DT37 1551 aa17.73■□□□□ 0.43
HDAC4-202ENST00000430200 BRINP3Q76B58 766 aa17.72■□□□□ 0.43
HDAC4-202ENST00000430200 SETD5Q9C0A6 1442 aa17.72■□□□□ 0.43
HDAC4-202ENST00000430200 RAB3GAP2Q9H2M9 1393 aa17.71■□□□□ 0.43
HDAC4-202ENST00000430200 JCADQ9P266 1359 aa17.71■□□□□ 0.43
HDAC4-202ENST00000430200 PIK3C2GO75747 1445 aa17.71■□□□□ 0.43
HDAC4-202ENST00000430200 ADGRF5Q8IZF2 1346 aa17.71■□□□□ 0.42
HDAC4-202ENST00000430200 CADPS2Q86UW7 1296 aa17.7■□□□□ 0.42
HDAC4-202ENST00000430200 MPHOSPH9Q99550 1183 aa17.7■□□□□ 0.42
HDAC4-202ENST00000430200 FMN2Q9NZ56 1722 aa17.69■□□□□ 0.42
HDAC4-202ENST00000430200 RGPD8O14715 1765 aaPredicted RBP17.69■□□□□ 0.42
HDAC4-202ENST00000430200 ATF3P18847 181 aa17.68■□□□□ 0.42
HDAC4-202ENST00000430200 C1orf167Q5SNV9 1468 aa17.68■□□□□ 0.42
HDAC4-202ENST00000430200 NRXN1Q9ULB1 1477 aa17.68■□□□□ 0.42
HDAC4-202ENST00000430200 POTEAQ6S8J7 498 aa17.67■□□□□ 0.42
HDAC4-202ENST00000430200 TECPR2O15040 1411 aa17.66■□□□□ 0.42
HDAC4-202ENST00000430200 DDX17Q92841 729 aaKnown RBP17.66■□□□□ 0.42
HDAC4-202ENST00000430200 RPGRIP1LQ68CZ1 1315 aa17.66■□□□□ 0.42
HDAC4-202ENST00000430200 MYOM2P54296 1465 aa17.65■□□□□ 0.42
HDAC4-202ENST00000430200 VGFO15240 615 aaPredicted RBP17.64■□□□□ 0.41
HDAC4-202ENST00000430200 COL22A1Q8NFW1 1626 aaPredicted RBP17.63■□□□□ 0.41
HDAC4-202ENST00000430200 PLEKHH1Q9ULM0 1364 aa17.63■□□□□ 0.41
HDAC4-202ENST00000430200 MARF1Q9Y4F3 1742 aaKnown RBP17.62■□□□□ 0.41
HDAC4-202ENST00000430200 RGL3Q3MIN7 710 aa17.62■□□□□ 0.41
HDAC4-202ENST00000430200 PNPLA6Q8IY17 1366 aa17.6■□□□□ 0.41
HDAC4-202ENST00000430200 ANKRD30BQ9BXX2 1392 aa17.6■□□□□ 0.41
HDAC4-202ENST00000430200 ADGRB1O14514 1584 aa17.6■□□□□ 0.41
HDAC4-202ENST00000430200 USP32Q8NFA0 1604 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 275.3 ms