RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 NUTM2DQ5VT03 806 aaPredicted RBP27.6■■■□□ 2.01
SHH-202ENST00000430104 BCANQ96GW7 911 aa27.6■■■□□ 2.01
SHH-202ENST00000430104 PPP1R15AO75807 674 aaPredicted RBP27.59■■■□□ 2.01
SHH-202ENST00000430104 HRCP23327 699 aa27.58■■■□□ 2.01
SHH-202ENST00000430104 HDGFP51858 240 aaKnown RBP27.58■■■□□ 2.01
SHH-202ENST00000430104 ZFYVE9O95405 1425 aa27.57■■■□□ 2
SHH-202ENST00000430104 CERKQ8TCT0 537 aa27.56■■■□□ 2
SHH-202ENST00000430104 LTBP4Q8N2S1 1624 aa27.55■■■□□ 2
SHH-202ENST00000430104 TRIM26Q12899 539 aaPredicted RBP27.54■■■□□ 2
SHH-202ENST00000430104 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.54■■■□□ 2
SHH-202ENST00000430104 CCDC144AA2RUR9 1427 aa27.51■■□□□ 1.99
SHH-202ENST00000430104 SLC26A8Q96RN1 970 aa27.51■■□□□ 1.99
SHH-202ENST00000430104 PLEKHG1Q9ULL1 1385 aa27.48■■□□□ 1.99
SHH-202ENST00000430104 STRCP1A6NGW2 1772 aa27.45■■□□□ 1.99
SHH-202ENST00000430104 RGL3Q3MIN7 710 aa27.44■■□□□ 1.98
SHH-202ENST00000430104 NEXMIFQ5QGS0 1516 aa27.43■■□□□ 1.98
SHH-202ENST00000430104 CPS1P31327 1500 aa27.4■■□□□ 1.98
SHH-202ENST00000430104 PPLO60437 1756 aa27.37■■□□□ 1.97
SHH-202ENST00000430104 ANKRD30BQ9BXX2 1392 aa27.37■■□□□ 1.97
SHH-202ENST00000430104 ILDR1Q86SU0 546 aaPredicted RBP27.37■■□□□ 1.97
SHH-202ENST00000430104 RPGRIP1LQ68CZ1 1315 aa27.37■■□□□ 1.97
SHH-202ENST00000430104 FBXO41Q8TF61 875 aa27.36■■□□□ 1.97
SHH-202ENST00000430104 ADAMTS13Q76LX8 1427 aa27.35■■□□□ 1.97
SHH-202ENST00000430104 TBX22Q9Y458 520 aa27.35■■□□□ 1.97
SHH-202ENST00000430104 SPATA31E1Q6ZUB1 1445 aa27.34■■□□□ 1.97
SHH-202ENST00000430104 VGFO15240 615 aaPredicted RBP27.34■■□□□ 1.97
SHH-202ENST00000430104 KCNA6P17658 529 aa27.33■■□□□ 1.97
SHH-202ENST00000430104 NRXN3Q9Y4C0 1643 aa27.33■■□□□ 1.97
SHH-202ENST00000430104 CHD2O14647 1828 aaKnown RBP27.32■■□□□ 1.96
SHH-202ENST00000430104 IQSEC2Q5JU85 1478 aa27.31■■□□□ 1.96
SHH-202ENST00000430104 DIP2AQ14689 1571 aa27.31■■□□□ 1.96
SHH-202ENST00000430104 LRRC7Q96NW7 1537 aa27.3■■□□□ 1.96
SHH-202ENST00000430104 SETBP1Q9Y6X0 1596 aa27.3■■□□□ 1.96
SHH-202ENST00000430104 IFT172Q9UG01 1749 aa27.3■■□□□ 1.96
SHH-202ENST00000430104 PROSER2Q86WR7 435 aaPredicted RBP27.26■■□□□ 1.95
SHH-202ENST00000430104 RBM33Q96EV2 1170 aaKnown RBP27.26■■□□□ 1.95
SHH-202ENST00000430104 NWD1Q149M9 1564 aa27.26■■□□□ 1.95
SHH-202ENST00000430104 XIRP1Q702N8 1843 aaKnown RBP27.25■■□□□ 1.95
SHH-202ENST00000430104 ADGRF5Q8IZF2 1346 aa27.24■■□□□ 1.95
SHH-202ENST00000430104 UBAP1LF5GYI3 381 aa27.24■■□□□ 1.95
SHH-202ENST00000430104 METP08581 1390 aa27.22■■□□□ 1.95
SHH-202ENST00000430104 AMOTL2Q9Y2J4 779 aa27.21■■□□□ 1.95
SHH-202ENST00000430104 PIK3R4Q99570 1358 aa27.21■■□□□ 1.95
SHH-202ENST00000430104 ALKQ9UM73 1620 aa27.2■■□□□ 1.95
SHH-202ENST00000430104 PTPRUQ92729 1446 aa27.2■■□□□ 1.94
SHH-202ENST00000430104 NKTRP30414 1462 aaKnown RBP27.19■■□□□ 1.94
SHH-202ENST00000430104 PCGF6Q9BYE7 350 aa27.19■■□□□ 1.94
SHH-202ENST00000430104 TMEM94Q12767 1356 aa27.19■■□□□ 1.94
SHH-202ENST00000430104 KDM2AQ9Y2K7 1162 aa27.18■■□□□ 1.94
SHH-202ENST00000430104 SETD1AO15047 1707 aaKnown RBP27.18■■□□□ 1.94
SHH-202ENST00000430104 DHX57Q6P158 1386 aaKnown RBP27.17■■□□□ 1.94
SHH-202ENST00000430104 TOM1O60784 492 aa27.15■■□□□ 1.94
SHH-202ENST00000430104 DCAF11Q8TEB1 546 aa27.15■■□□□ 1.94
SHH-202ENST00000430104 SCAF1Q9H7N4 1312 aaKnown RBP27.15■■□□□ 1.94
SHH-202ENST00000430104 PIP4K2BP78356 416 aa27.13■■□□□ 1.93
SHH-202ENST00000430104 XRN1Q8IZH2 1706 aaKnown RBP27.13■■□□□ 1.93
SHH-202ENST00000430104 C14orf37Q86TY3 774 aa27.12■■□□□ 1.93
SHH-202ENST00000430104 SIN3AQ96ST3 1273 aa27.12■■□□□ 1.93
SHH-202ENST00000430104 MYOM2P54296 1465 aa27.12■■□□□ 1.93
SHH-202ENST00000430104 PIK3C2GO75747 1445 aa27.11■■□□□ 1.93
SHH-202ENST00000430104 NEUROD1Q13562 356 aa27.1■■□□□ 1.93
SHH-202ENST00000430104 TMEM132EQ6IEE7 984 aa27.07■■□□□ 1.92
SHH-202ENST00000430104 CFAP70Q5T0N1 1121 aa27.06■■□□□ 1.92
SHH-202ENST00000430104 MSH6P52701 1360 aa27.06■■□□□ 1.92
SHH-202ENST00000430104 NRXN1Q9ULB1 1477 aa27.06■■□□□ 1.92
SHH-202ENST00000430104 STK26Q9P289 416 aa27.05■■□□□ 1.92
SHH-202ENST00000430104 C14orf93Q9H972 538 aaKnown RBP27.03■■□□□ 1.92
SHH-202ENST00000430104 LAMC1P11047 1609 aa27.01■■□□□ 1.92
SHH-202ENST00000430104 ASXL1Q8IXJ9 1541 aa27.01■■□□□ 1.91
SHH-202ENST00000430104 NCOA3Q9Y6Q9 1424 aa27■■□□□ 1.91
SHH-202ENST00000430104 SIPA1L2Q9P2F8 1722 aaPredicted RBP27■■□□□ 1.91
SHH-202ENST00000430104 STAC3Q96MF2 364 aa26.99■■□□□ 1.91
SHH-202ENST00000430104 ROBO2Q9HCK4 1378 aa26.98■■□□□ 1.91
SHH-202ENST00000430104 C19orf44Q9H6X5 657 aa26.97■■□□□ 1.91
SHH-202ENST00000430104 L3MBTL2Q969R5 705 aa26.96■■□□□ 1.91
SHH-202ENST00000430104 PTCH1Q13635 1447 aa26.96■■□□□ 1.91
SHH-202ENST00000430104 LRPPRCP42704 1394 aaKnown RBP26.96■■□□□ 1.91
SHH-202ENST00000430104 ATF3P18847 181 aa26.95■■□□□ 1.9
SHH-202ENST00000430104 YTHDC2Q9H6S0 1430 aaKnown RBP26.95■■□□□ 1.9
SHH-202ENST00000430104 NALCNQ8IZF0 1738 aa26.94■■□□□ 1.9
SHH-202ENST00000430104 KNDC1Q76NI1 1749 aa26.93■■□□□ 1.9
SHH-202ENST00000430104 WAPLQ7Z5K2 1190 aa26.92■■□□□ 1.9
SHH-202ENST00000430104 CADPS2Q86UW7 1296 aa26.91■■□□□ 1.9
SHH-202ENST00000430104 SLAIN2Q9P270 581 aa26.91■■□□□ 1.9
SHH-202ENST00000430104 ABCC11Q96J66 1382 aa26.91■■□□□ 1.9
SHH-202ENST00000430104 PRAG1Q86YV5 1406 aa26.9■■□□□ 1.9
SHH-202ENST00000430104 ADGRL3Q9HAR2 1447 aa26.9■■□□□ 1.9
SHH-202ENST00000430104 HSPA1LP34931 641 aa26.89■■□□□ 1.9
SHH-202ENST00000430104 TECPR2O15040 1411 aa26.89■■□□□ 1.89
SHH-202ENST00000430104 ROBO1Q9Y6N7 1651 aa26.88■■□□□ 1.89
SHH-202ENST00000430104 ADGRB1O14514 1584 aa26.88■■□□□ 1.89
SHH-202ENST00000430104 PLEKHH1Q9ULM0 1364 aa26.86■■□□□ 1.89
SHH-202ENST00000430104 TRAK1Q9UPV9 953 aa26.86■■□□□ 1.89
SHH-202ENST00000430104 KIAA1210Q9ULL0 1709 aa26.84■■□□□ 1.89
SHH-202ENST00000430104 TONSLQ96HA7 1378 aa26.84■■□□□ 1.89
SHH-202ENST00000430104 DCCP43146 1447 aa26.83■■□□□ 1.89
SHH-202ENST00000430104 FAM135BQ49AJ0 1406 aa26.83■■□□□ 1.89
SHH-202ENST00000430104 SAFB2Q14151 953 aaKnown RBP eCLIP26.83■■□□□ 1.89
SHH-202ENST00000430104 PRAM1Q96QH2 718 aa26.82■■□□□ 1.88
SHH-202ENST00000430104 POGKQ9P215 609 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms