RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 TOM1O60784 492 aa27.92■■■□□ 2.06
PSPC1-202ENST00000427943 CHGAP10645 457 aaKnown RBP27.92■■■□□ 2.06
PSPC1-202ENST00000427943 SENP3Q9H4L4 574 aaPredicted RBP27.91■■■□□ 2.06
PSPC1-202ENST00000427943 SLC26A8Q96RN1 970 aa27.9■■■□□ 2.06
PSPC1-202ENST00000427943 NWD1Q149M9 1564 aa27.87■■■□□ 2.05
PSPC1-202ENST00000427943 HFM1A2PYH4 1435 aa27.86■■■□□ 2.05
PSPC1-202ENST00000427943 BCANQ96GW7 911 aa27.86■■■□□ 2.05
PSPC1-202ENST00000427943 PLEKHG1Q9ULL1 1385 aa27.86■■■□□ 2.05
PSPC1-202ENST00000427943 PPP1R15AO75807 674 aaPredicted RBP27.85■■■□□ 2.05
PSPC1-202ENST00000427943 CHD2O14647 1828 aaKnown RBP27.85■■■□□ 2.05
PSPC1-202ENST00000427943 CLTCL1P53675 1640 aa27.83■■■□□ 2.05
PSPC1-202ENST00000427943 DISP3Q9P2K9 1392 aa27.83■■■□□ 2.05
PSPC1-202ENST00000427943 NUTM2DQ5VT03 806 aaPredicted RBP27.81■■■□□ 2.04
PSPC1-202ENST00000427943 KCNA6P17658 529 aa27.8■■■□□ 2.04
PSPC1-202ENST00000427943 HSPA1LP34931 641 aa27.8■■■□□ 2.04
PSPC1-202ENST00000427943 KIF1BO60333 1816 aa27.79■■■□□ 2.04
PSPC1-202ENST00000427943 TRPM2O94759 1503 aa27.79■■■□□ 2.04
PSPC1-202ENST00000427943 NKTRP30414 1462 aaKnown RBP27.79■■■□□ 2.04
PSPC1-202ENST00000427943 HDGFP51858 240 aaKnown RBP27.78■■■□□ 2.04
PSPC1-202ENST00000427943 TMEM94Q12767 1356 aa27.77■■■□□ 2.04
PSPC1-202ENST00000427943 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.77■■■□□ 2.04
PSPC1-202ENST00000427943 DIP2AQ14689 1571 aa27.77■■■□□ 2.04
PSPC1-202ENST00000427943 TRIM52Q96A61 297 aa27.75■■■□□ 2.03
PSPC1-202ENST00000427943 RBM33Q96EV2 1170 aaKnown RBP27.74■■■□□ 2.03
PSPC1-202ENST00000427943 ADAMTS13Q76LX8 1427 aa27.74■■■□□ 2.03
PSPC1-202ENST00000427943 NRXN3Q9Y4C0 1643 aa27.72■■■□□ 2.03
PSPC1-202ENST00000427943 PROSER2Q86WR7 435 aaPredicted RBP27.72■■■□□ 2.03
PSPC1-202ENST00000427943 NEXMIFQ5QGS0 1516 aa27.68■■■□□ 2.02
PSPC1-202ENST00000427943 TBX22Q9Y458 520 aa27.68■■■□□ 2.02
PSPC1-202ENST00000427943 ZNF326Q5BKZ1 582 aaKnown RBP27.67■■■□□ 2.02
PSPC1-202ENST00000427943 MED1Q15648 1581 aaPredicted RBP27.67■■■□□ 2.02
PSPC1-202ENST00000427943 SETBP1Q9Y6X0 1596 aa27.65■■■□□ 2.02
PSPC1-202ENST00000427943 ROBO1Q9Y6N7 1651 aa27.65■■■□□ 2.02
PSPC1-202ENST00000427943 SLC4A1APQ9BWU0 796 aaKnown RBP27.64■■■□□ 2.02
PSPC1-202ENST00000427943 ILDR2Q71H61 639 aa27.61■■■□□ 2.01
PSPC1-202ENST00000427943 XRN1Q8IZH2 1706 aaKnown RBP27.61■■■□□ 2.01
PSPC1-202ENST00000427943 MSH6P52701 1360 aa27.6■■■□□ 2.01
PSPC1-202ENST00000427943 PIK3R4Q99570 1358 aa27.6■■■□□ 2.01
PSPC1-202ENST00000427943 PTPRUQ92729 1446 aa27.59■■■□□ 2.01
PSPC1-202ENST00000427943 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.58■■■□□ 2.01
PSPC1-202ENST00000427943 PPLO60437 1756 aa27.58■■■□□ 2
PSPC1-202ENST00000427943 FOXD1Q16676 465 aa27.56■■■□□ 2
PSPC1-202ENST00000427943 FAM135BQ49AJ0 1406 aa27.56■■■□□ 2
PSPC1-202ENST00000427943 SETD1AO15047 1707 aaKnown RBP27.53■■■□□ 2
PSPC1-202ENST00000427943 AMOTL2Q9Y2J4 779 aa27.52■■■□□ 2
PSPC1-202ENST00000427943 C14orf37Q86TY3 774 aa27.51■■□□□ 1.99
PSPC1-202ENST00000427943 NCOA3Q9Y6Q9 1424 aa27.5■■□□□ 1.99
PSPC1-202ENST00000427943 PHLPP1O60346 1717 aa27.5■■□□□ 1.99
PSPC1-202ENST00000427943 METP08581 1390 aa27.5■■□□□ 1.99
PSPC1-202ENST00000427943 SETD5Q9C0A6 1442 aa27.48■■□□□ 1.99
PSPC1-202ENST00000427943 IFT172Q9UG01 1749 aa27.47■■□□□ 1.99
PSPC1-202ENST00000427943 MPHOSPH9Q99550 1183 aa27.46■■□□□ 1.99
PSPC1-202ENST00000427943 CCDC144AA2RUR9 1427 aa27.45■■□□□ 1.98
PSPC1-202ENST00000427943 SLAIN2Q9P270 581 aa27.45■■□□□ 1.98
PSPC1-202ENST00000427943 NALCNQ8IZF0 1738 aa27.44■■□□□ 1.98
PSPC1-202ENST00000427943 VGFO15240 615 aaPredicted RBP27.4■■□□□ 1.98
PSPC1-202ENST00000427943 C19orf44Q9H6X5 657 aa27.4■■□□□ 1.98
PSPC1-202ENST00000427943 RPGRIP1LQ68CZ1 1315 aa27.4■■□□□ 1.98
PSPC1-202ENST00000427943 RAB3GAP2Q9H2M9 1393 aa27.39■■□□□ 1.98
PSPC1-202ENST00000427943 COL16A1Q07092 1604 aaPredicted RBP27.38■■□□□ 1.97
PSPC1-202ENST00000427943 ATF3P18847 181 aa27.38■■□□□ 1.97
PSPC1-202ENST00000427943 CADPS2Q86UW7 1296 aa27.38■■□□□ 1.97
PSPC1-202ENST00000427943 PHF23Q9BUL5 403 aaPredicted RBP27.38■■□□□ 1.97
PSPC1-202ENST00000427943 SPATA31E1Q6ZUB1 1445 aa27.37■■□□□ 1.97
PSPC1-202ENST00000427943 DCCP43146 1447 aa27.36■■□□□ 1.97
PSPC1-202ENST00000427943 AHDC1Q5TGY3 1603 aaPredicted RBP27.34■■□□□ 1.97
PSPC1-202ENST00000427943 ADGRL3Q9HAR2 1447 aa27.33■■□□□ 1.97
PSPC1-202ENST00000427943 RGL3Q3MIN7 710 aa27.33■■□□□ 1.97
PSPC1-202ENST00000427943 SOCS7O14512 581 aa27.32■■□□□ 1.96
PSPC1-202ENST00000427943 ACIN1Q9UKV3 1341 aaKnown RBP27.32■■□□□ 1.96
PSPC1-202ENST00000427943 PTCH1Q13635 1447 aa27.32■■□□□ 1.96
PSPC1-202ENST00000427943 ADGRF5Q8IZF2 1346 aa27.3■■□□□ 1.96
PSPC1-202ENST00000427943 MST1RQ04912 1400 aa27.3■■□□□ 1.96
PSPC1-202ENST00000427943 ASXL1Q8IXJ9 1541 aa27.28■■□□□ 1.96
PSPC1-202ENST00000427943 ROBO2Q9HCK4 1378 aa27.28■■□□□ 1.96
PSPC1-202ENST00000427943 NHSL1Q5SYE7 1610 aa27.27■■□□□ 1.96
PSPC1-202ENST00000427943 PRAG1Q86YV5 1406 aa27.26■■□□□ 1.95
PSPC1-202ENST00000427943 ANKRD30BQ9BXX2 1392 aa27.26■■□□□ 1.95
PSPC1-202ENST00000427943 JCADQ9P266 1359 aa27.25■■□□□ 1.95
PSPC1-202ENST00000427943 SHPRHQ149N8 1683 aa27.25■■□□□ 1.95
PSPC1-202ENST00000427943 BRINP3Q76B58 766 aa27.25■■□□□ 1.95
PSPC1-202ENST00000427943 KNDC1Q76NI1 1749 aa27.24■■□□□ 1.95
PSPC1-202ENST00000427943 PIK3C2GO75747 1445 aa27.22■■□□□ 1.95
PSPC1-202ENST00000427943 RGS17Q9UGC6 210 aaPredicted RBP27.18■■□□□ 1.94
PSPC1-202ENST00000427943 LAMC1P11047 1609 aa27.18■■□□□ 1.94
PSPC1-202ENST00000427943 LRP6O75581 1613 aa27.16■■□□□ 1.94
PSPC1-202ENST00000427943 MYOM2P54296 1465 aa27.16■■□□□ 1.94
PSPC1-202ENST00000427943 C1orf167Q5SNV9 1468 aa27.16■■□□□ 1.94
PSPC1-202ENST00000427943 CDC42BPGQ6DT37 1551 aa27.15■■□□□ 1.94
PSPC1-202ENST00000427943 STK26Q9P289 416 aa27.14■■□□□ 1.94
PSPC1-202ENST00000427943 NRXN1Q9ULB1 1477 aa27.13■■□□□ 1.93
PSPC1-202ENST00000427943 TECPR2O15040 1411 aa27.13■■□□□ 1.93
PSPC1-202ENST00000427943 LRPPRCP42704 1394 aaKnown RBP27.12■■□□□ 1.93
PSPC1-202ENST00000427943 TMEM132EQ6IEE7 984 aa27.12■■□□□ 1.93
PSPC1-202ENST00000427943 DDX17Q92841 729 aaKnown RBP27.11■■□□□ 1.93
PSPC1-202ENST00000427943 SPATA31A6Q5VVP1 1343 aa27.1■■□□□ 1.93
PSPC1-202ENST00000427943 YTHDC2Q9H6S0 1430 aaKnown RBP27.09■■□□□ 1.93
PSPC1-202ENST00000427943 HRCP23327 699 aa27.07■■□□□ 1.92
PSPC1-202ENST00000427943 WAPLQ7Z5K2 1190 aa27.07■■□□□ 1.92
PSPC1-202ENST00000427943 ABCC11Q96J66 1382 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms