RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 KIF1BO60333 1816 aa22.18■■□□□ 1.14
LIMS4-201ENST00000413601 SLC4A1APQ9BWU0 796 aaKnown RBP22.18■■□□□ 1.14
LIMS4-201ENST00000413601 TRPM2O94759 1503 aa22.17■■□□□ 1.14
LIMS4-201ENST00000413601 HDGFP51858 240 aaKnown RBP22.15■■□□□ 1.14
LIMS4-201ENST00000413601 SLC26A8Q96RN1 970 aa22.15■■□□□ 1.14
LIMS4-201ENST00000413601 SETD5Q9C0A6 1442 aa22.14■■□□□ 1.14
LIMS4-201ENST00000413601 PPP1R15AO75807 674 aaPredicted RBP22.14■■□□□ 1.13
LIMS4-201ENST00000413601 NUTM2DQ5VT03 806 aaPredicted RBP22.14■■□□□ 1.13
LIMS4-201ENST00000413601 BCANQ96GW7 911 aa22.14■■□□□ 1.13
LIMS4-201ENST00000413601 XIRP1Q702N8 1843 aaKnown RBP22.12■■□□□ 1.13
LIMS4-201ENST00000413601 PLEKHG1Q9ULL1 1385 aa22.12■■□□□ 1.13
LIMS4-201ENST00000413601 LRRC7Q96NW7 1537 aa22.11■■□□□ 1.13
LIMS4-201ENST00000413601 UBAP1LF5GYI3 381 aa22.11■■□□□ 1.13
LIMS4-201ENST00000413601 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.11■■□□□ 1.13
LIMS4-201ENST00000413601 FOXD1Q16676 465 aa22.1■■□□□ 1.13
LIMS4-201ENST00000413601 CHD2O14647 1828 aaKnown RBP22.09■■□□□ 1.13
LIMS4-201ENST00000413601 ZNF326Q5BKZ1 582 aaKnown RBP22.08■■□□□ 1.13
LIMS4-201ENST00000413601 MPHOSPH9Q99550 1183 aa22.08■■□□□ 1.13
LIMS4-201ENST00000413601 RAB3GAP2Q9H2M9 1393 aa22.06■■□□□ 1.12
LIMS4-201ENST00000413601 NWD1Q149M9 1564 aa22.04■■□□□ 1.12
LIMS4-201ENST00000413601 KCNA6P17658 529 aa22.04■■□□□ 1.12
LIMS4-201ENST00000413601 NEXMIFQ5QGS0 1516 aa22.04■■□□□ 1.12
LIMS4-201ENST00000413601 ACIN1Q9UKV3 1341 aaKnown RBP22.04■■□□□ 1.12
LIMS4-201ENST00000413601 ADAMTS13Q76LX8 1427 aa22.03■■□□□ 1.12
LIMS4-201ENST00000413601 TBX22Q9Y458 520 aa22.02■■□□□ 1.12
LIMS4-201ENST00000413601 DIP2AQ14689 1571 aa22.02■■□□□ 1.12
LIMS4-201ENST00000413601 NRXN3Q9Y4C0 1643 aa22.02■■□□□ 1.11
LIMS4-201ENST00000413601 TOM1O60784 492 aa22.01■■□□□ 1.11
LIMS4-201ENST00000413601 ALKQ9UM73 1620 aa22.01■■□□□ 1.11
LIMS4-201ENST00000413601 PPLO60437 1756 aa21.99■■□□□ 1.11
LIMS4-201ENST00000413601 PROSER2Q86WR7 435 aaPredicted RBP21.99■■□□□ 1.11
LIMS4-201ENST00000413601 SETBP1Q9Y6X0 1596 aa21.99■■□□□ 1.11
LIMS4-201ENST00000413601 NKTRP30414 1462 aaKnown RBP21.98■■□□□ 1.11
LIMS4-201ENST00000413601 PIP4K2BP78356 416 aa21.98■■□□□ 1.11
LIMS4-201ENST00000413601 SCAF1Q9H7N4 1312 aaKnown RBP21.98■■□□□ 1.11
LIMS4-201ENST00000413601 CCDC144AA2RUR9 1427 aa21.97■■□□□ 1.11
LIMS4-201ENST00000413601 RBM33Q96EV2 1170 aaKnown RBP21.97■■□□□ 1.11
LIMS4-201ENST00000413601 TMEM94Q12767 1356 aa21.96■■□□□ 1.11
LIMS4-201ENST00000413601 PIK3R4Q99570 1358 aa21.93■■□□□ 1.1
LIMS4-201ENST00000413601 IFT172Q9UG01 1749 aa21.92■■□□□ 1.1
LIMS4-201ENST00000413601 RPGRIP1LQ68CZ1 1315 aa21.92■■□□□ 1.1
LIMS4-201ENST00000413601 VGFO15240 615 aaPredicted RBP21.91■■□□□ 1.1
LIMS4-201ENST00000413601 PTPRUQ92729 1446 aa21.9■■□□□ 1.1
LIMS4-201ENST00000413601 SETD1AO15047 1707 aaKnown RBP21.9■■□□□ 1.1
LIMS4-201ENST00000413601 RGL3Q3MIN7 710 aa21.9■■□□□ 1.1
LIMS4-201ENST00000413601 SPATA31E1Q6ZUB1 1445 aa21.89■■□□□ 1.1
LIMS4-201ENST00000413601 XRN1Q8IZH2 1706 aaKnown RBP21.89■■□□□ 1.1
LIMS4-201ENST00000413601 HRCP23327 699 aa21.89■■□□□ 1.09
LIMS4-201ENST00000413601 AMOTL2Q9Y2J4 779 aa21.88■■□□□ 1.09
LIMS4-201ENST00000413601 METP08581 1390 aa21.87■■□□□ 1.09
LIMS4-201ENST00000413601 HSPA1LP34931 641 aa21.85■■□□□ 1.09
LIMS4-201ENST00000413601 MSH6P52701 1360 aa21.85■■□□□ 1.09
LIMS4-201ENST00000413601 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.83■■□□□ 1.09
LIMS4-201ENST00000413601 ADGRF5Q8IZF2 1346 aa21.81■■□□□ 1.08
LIMS4-201ENST00000413601 NCOA3Q9Y6Q9 1424 aa21.81■■□□□ 1.08
LIMS4-201ENST00000413601 C14orf37Q86TY3 774 aa21.81■■□□□ 1.08
LIMS4-201ENST00000413601 ANKRD30BQ9BXX2 1392 aa21.81■■□□□ 1.08
LIMS4-201ENST00000413601 ROBO1Q9Y6N7 1651 aa21.8■■□□□ 1.08
LIMS4-201ENST00000413601 FAM135BQ49AJ0 1406 aa21.76■■□□□ 1.07
LIMS4-201ENST00000413601 C19orf44Q9H6X5 657 aa21.76■■□□□ 1.07
LIMS4-201ENST00000413601 SLAIN2Q9P270 581 aa21.75■■□□□ 1.07
LIMS4-201ENST00000413601 NALCNQ8IZF0 1738 aa21.75■■□□□ 1.07
LIMS4-201ENST00000413601 PIK3C2GO75747 1445 aa21.72■■□□□ 1.07
LIMS4-201ENST00000413601 ATF3P18847 181 aa21.72■■□□□ 1.07
LIMS4-201ENST00000413601 CADPS2Q86UW7 1296 aa21.71■■□□□ 1.07
LIMS4-201ENST00000413601 MYOM2P54296 1465 aa21.71■■□□□ 1.07
LIMS4-201ENST00000413601 ROBO2Q9HCK4 1378 aa21.7■■□□□ 1.06
LIMS4-201ENST00000413601 PTCH1Q13635 1447 aa21.7■■□□□ 1.06
LIMS4-201ENST00000413601 NRXN1Q9ULB1 1477 aa21.69■■□□□ 1.06
LIMS4-201ENST00000413601 ASXL1Q8IXJ9 1541 aa21.69■■□□□ 1.06
LIMS4-201ENST00000413601 PHLPP1O60346 1717 aa21.69■■□□□ 1.06
LIMS4-201ENST00000413601 ADGRL3Q9HAR2 1447 aa21.68■■□□□ 1.06
LIMS4-201ENST00000413601 LAMC1P11047 1609 aa21.68■■□□□ 1.06
LIMS4-201ENST00000413601 DCCP43146 1447 aa21.67■■□□□ 1.06
LIMS4-201ENST00000413601 PRAG1Q86YV5 1406 aa21.67■■□□□ 1.06
LIMS4-201ENST00000413601 DISP3Q9P2K9 1392 aa21.67■■□□□ 1.06
LIMS4-201ENST00000413601 TMEM132EQ6IEE7 984 aa21.67■■□□□ 1.06
LIMS4-201ENST00000413601 KNDC1Q76NI1 1749 aa21.66■■□□□ 1.06
LIMS4-201ENST00000413601 STK26Q9P289 416 aa21.66■■□□□ 1.06
LIMS4-201ENST00000413601 DCAF11Q8TEB1 546 aa21.64■■□□□ 1.05
LIMS4-201ENST00000413601 C14orf93Q9H972 538 aaKnown RBP21.64■■□□□ 1.05
LIMS4-201ENST00000413601 KDM2AQ9Y2K7 1162 aa21.64■■□□□ 1.05
LIMS4-201ENST00000413601 MED1Q15648 1581 aaPredicted RBP21.64■■□□□ 1.05
LIMS4-201ENST00000413601 CFAP70Q5T0N1 1121 aa21.63■■□□□ 1.05
LIMS4-201ENST00000413601 LRPPRCP42704 1394 aaKnown RBP21.62■■□□□ 1.05
LIMS4-201ENST00000413601 MST1RQ04912 1400 aa21.62■■□□□ 1.05
LIMS4-201ENST00000413601 TECPR2O15040 1411 aa21.61■■□□□ 1.05
LIMS4-201ENST00000413601 YTHDC2Q9H6S0 1430 aaKnown RBP21.61■■□□□ 1.05
LIMS4-201ENST00000413601 TRIM26Q12899 539 aaPredicted RBP21.6■■□□□ 1.05
LIMS4-201ENST00000413601 DHX57Q6P158 1386 aaKnown RBP21.6■■□□□ 1.05
LIMS4-201ENST00000413601 ABCC11Q96J66 1382 aa21.6■■□□□ 1.05
LIMS4-201ENST00000413601 COL16A1Q07092 1604 aaPredicted RBP21.59■■□□□ 1.05
LIMS4-201ENST00000413601 BRINP3Q76B58 766 aa21.58■■□□□ 1.05
LIMS4-201ENST00000413601 WAPLQ7Z5K2 1190 aa21.58■■□□□ 1.05
LIMS4-201ENST00000413601 AHDC1Q5TGY3 1603 aaPredicted RBP21.58■■□□□ 1.04
LIMS4-201ENST00000413601 PLEKHH1Q9ULM0 1364 aa21.56■■□□□ 1.04
LIMS4-201ENST00000413601 NHSL1Q5SYE7 1610 aa21.55■■□□□ 1.04
LIMS4-201ENST00000413601 STAC3Q96MF2 364 aa21.55■■□□□ 1.04
LIMS4-201ENST00000413601 CDC42BPGQ6DT37 1551 aa21.54■■□□□ 1.04
LIMS4-201ENST00000413601 ADGRB1O14514 1584 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms