RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ALKQ9UM73 1620 aa28.73■■■□□ 2.19
SF3A1-202ENST00000411423 TRIM52Q96A61 297 aa28.73■■■□□ 2.19
SF3A1-202ENST00000411423 CLTCL1P53675 1640 aa28.72■■■□□ 2.19
SF3A1-202ENST00000411423 NUTM2DQ5VT03 806 aaPredicted RBP28.71■■■□□ 2.19
SF3A1-202ENST00000411423 PLEKHG1Q9ULL1 1385 aa28.7■■■□□ 2.18
SF3A1-202ENST00000411423 TRPM2O94759 1503 aa28.69■■■□□ 2.18
SF3A1-202ENST00000411423 XIRP1Q702N8 1843 aaKnown RBP28.68■■■□□ 2.18
SF3A1-202ENST00000411423 PPP1R15AO75807 674 aaPredicted RBP28.64■■■□□ 2.18
SF3A1-202ENST00000411423 SLC4A1APQ9BWU0 796 aaKnown RBP28.64■■■□□ 2.18
SF3A1-202ENST00000411423 ADAMTS13Q76LX8 1427 aa28.63■■■□□ 2.17
SF3A1-202ENST00000411423 NWD1Q149M9 1564 aa28.62■■■□□ 2.17
SF3A1-202ENST00000411423 KCNA6P17658 529 aa28.62■■■□□ 2.17
SF3A1-202ENST00000411423 BCANQ96GW7 911 aa28.62■■■□□ 2.17
SF3A1-202ENST00000411423 FOXD1Q16676 465 aa28.61■■■□□ 2.17
SF3A1-202ENST00000411423 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.61■■■□□ 2.17
SF3A1-202ENST00000411423 HDGFP51858 240 aaKnown RBP28.59■■■□□ 2.17
SF3A1-202ENST00000411423 PIP4K2BP78356 416 aa28.59■■■□□ 2.17
SF3A1-202ENST00000411423 TOM1O60784 492 aa28.58■■■□□ 2.17
SF3A1-202ENST00000411423 RBM33Q96EV2 1170 aaKnown RBP28.58■■■□□ 2.17
SF3A1-202ENST00000411423 CHD2O14647 1828 aaKnown RBP28.56■■■□□ 2.16
SF3A1-202ENST00000411423 TMEM94Q12767 1356 aa28.56■■■□□ 2.16
SF3A1-202ENST00000411423 NEXMIFQ5QGS0 1516 aa28.56■■■□□ 2.16
SF3A1-202ENST00000411423 NRXN3Q9Y4C0 1643 aa28.56■■■□□ 2.16
SF3A1-202ENST00000411423 SETD5Q9C0A6 1442 aa28.55■■■□□ 2.16
SF3A1-202ENST00000411423 TBX22Q9Y458 520 aa28.55■■■□□ 2.16
SF3A1-202ENST00000411423 SCAF1Q9H7N4 1312 aaKnown RBP28.54■■■□□ 2.16
SF3A1-202ENST00000411423 ZNF326Q5BKZ1 582 aaKnown RBP28.54■■■□□ 2.16
SF3A1-202ENST00000411423 KIF1BO60333 1816 aa28.53■■■□□ 2.16
SF3A1-202ENST00000411423 MPHOSPH9Q99550 1183 aa28.53■■■□□ 2.16
SF3A1-202ENST00000411423 NKTRP30414 1462 aaKnown RBP28.53■■■□□ 2.16
SF3A1-202ENST00000411423 DIP2AQ14689 1571 aa28.51■■■□□ 2.15
SF3A1-202ENST00000411423 PROSER2Q86WR7 435 aaPredicted RBP28.5■■■□□ 2.15
SF3A1-202ENST00000411423 PTPRUQ92729 1446 aa28.5■■■□□ 2.15
SF3A1-202ENST00000411423 SETBP1Q9Y6X0 1596 aa28.5■■■□□ 2.15
SF3A1-202ENST00000411423 HSPA1LP34931 641 aa28.49■■■□□ 2.15
SF3A1-202ENST00000411423 RAB3GAP2Q9H2M9 1393 aa28.49■■■□□ 2.15
SF3A1-202ENST00000411423 PIK3R4Q99570 1358 aa28.43■■■□□ 2.14
SF3A1-202ENST00000411423 METP08581 1390 aa28.41■■■□□ 2.14
SF3A1-202ENST00000411423 XRN1Q8IZH2 1706 aaKnown RBP28.38■■■□□ 2.13
SF3A1-202ENST00000411423 PPLO60437 1756 aa28.38■■■□□ 2.13
SF3A1-202ENST00000411423 AMOTL2Q9Y2J4 779 aa28.38■■■□□ 2.13
SF3A1-202ENST00000411423 CCDC144AA2RUR9 1427 aa28.37■■■□□ 2.13
SF3A1-202ENST00000411423 SPATA31E1Q6ZUB1 1445 aa28.37■■■□□ 2.13
SF3A1-202ENST00000411423 SETD1AO15047 1707 aaKnown RBP28.35■■■□□ 2.13
SF3A1-202ENST00000411423 RPGRIP1LQ68CZ1 1315 aa28.33■■■□□ 2.13
SF3A1-202ENST00000411423 MSH6P52701 1360 aa28.33■■■□□ 2.13
SF3A1-202ENST00000411423 NCOA3Q9Y6Q9 1424 aa28.31■■■□□ 2.12
SF3A1-202ENST00000411423 FAM135BQ49AJ0 1406 aa28.3■■■□□ 2.12
SF3A1-202ENST00000411423 VGFO15240 615 aaPredicted RBP28.3■■■□□ 2.12
SF3A1-202ENST00000411423 RGL3Q3MIN7 710 aa28.3■■■□□ 2.12
SF3A1-202ENST00000411423 IFT172Q9UG01 1749 aa28.29■■■□□ 2.12
SF3A1-202ENST00000411423 DISP3Q9P2K9 1392 aa28.29■■■□□ 2.12
SF3A1-202ENST00000411423 ACIN1Q9UKV3 1341 aaKnown RBP28.29■■■□□ 2.12
SF3A1-202ENST00000411423 ROBO1Q9Y6N7 1651 aa28.29■■■□□ 2.12
SF3A1-202ENST00000411423 ADGRF5Q8IZF2 1346 aa28.28■■■□□ 2.12
SF3A1-202ENST00000411423 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.28■■■□□ 2.12
SF3A1-202ENST00000411423 SLAIN2Q9P270 581 aa28.23■■■□□ 2.11
SF3A1-202ENST00000411423 C14orf37Q86TY3 774 aa28.22■■■□□ 2.11
SF3A1-202ENST00000411423 HRCP23327 699 aa28.21■■■□□ 2.11
SF3A1-202ENST00000411423 ANKRD30BQ9BXX2 1392 aa28.21■■■□□ 2.11
SF3A1-202ENST00000411423 MED1Q15648 1581 aaPredicted RBP28.2■■■□□ 2.11
SF3A1-202ENST00000411423 C19orf44Q9H6X5 657 aa28.2■■■□□ 2.1
SF3A1-202ENST00000411423 ILDR2Q71H61 639 aa28.18■■■□□ 2.1
SF3A1-202ENST00000411423 ROBO2Q9HCK4 1378 aa28.18■■■□□ 2.1
SF3A1-202ENST00000411423 NALCNQ8IZF0 1738 aa28.16■■■□□ 2.1
SF3A1-202ENST00000411423 ASXL1Q8IXJ9 1541 aa28.16■■■□□ 2.1
SF3A1-202ENST00000411423 PIK3C2GO75747 1445 aa28.15■■■□□ 2.1
SF3A1-202ENST00000411423 PTCH1Q13635 1447 aa28.15■■■□□ 2.1
SF3A1-202ENST00000411423 PRAG1Q86YV5 1406 aa28.15■■■□□ 2.1
SF3A1-202ENST00000411423 CADPS2Q86UW7 1296 aa28.14■■■□□ 2.1
SF3A1-202ENST00000411423 DCCP43146 1447 aa28.12■■■□□ 2.09
SF3A1-202ENST00000411423 ADGRL3Q9HAR2 1447 aa28.12■■■□□ 2.09
SF3A1-202ENST00000411423 ATF3P18847 181 aa28.12■■■□□ 2.09
SF3A1-202ENST00000411423 NRXN1Q9ULB1 1477 aa28.11■■■□□ 2.09
SF3A1-202ENST00000411423 MST1RQ04912 1400 aa28.1■■■□□ 2.09
SF3A1-202ENST00000411423 PHLPP1O60346 1717 aa28.09■■■□□ 2.09
SF3A1-202ENST00000411423 MYOM2P54296 1465 aa28.08■■■□□ 2.09
SF3A1-202ENST00000411423 TMEM132EQ6IEE7 984 aa28.07■■■□□ 2.08
SF3A1-202ENST00000411423 COL16A1Q07092 1604 aaPredicted RBP28.07■■■□□ 2.08
SF3A1-202ENST00000411423 BRINP3Q76B58 766 aa28.06■■■□□ 2.08
SF3A1-202ENST00000411423 AHDC1Q5TGY3 1603 aaPredicted RBP28.03■■■□□ 2.08
SF3A1-202ENST00000411423 STK26Q9P289 416 aa28.03■■■□□ 2.08
SF3A1-202ENST00000411423 TECPR2O15040 1411 aa28.02■■■□□ 2.08
SF3A1-202ENST00000411423 LRPPRCP42704 1394 aaKnown RBP28.02■■■□□ 2.08
SF3A1-202ENST00000411423 CFAP70Q5T0N1 1121 aa28.02■■■□□ 2.08
SF3A1-202ENST00000411423 C14orf93Q9H972 538 aaKnown RBP28.01■■■□□ 2.07
SF3A1-202ENST00000411423 PLEKHH1Q9ULM0 1364 aa28■■■□□ 2.07
SF3A1-202ENST00000411423 KNDC1Q76NI1 1749 aa28■■■□□ 2.07
SF3A1-202ENST00000411423 WAPLQ7Z5K2 1190 aa27.99■■■□□ 2.07
SF3A1-202ENST00000411423 YTHDC2Q9H6S0 1430 aaKnown RBP27.99■■■□□ 2.07
SF3A1-202ENST00000411423 DHX57Q6P158 1386 aaKnown RBP27.99■■■□□ 2.07
SF3A1-202ENST00000411423 ABCC11Q96J66 1382 aa27.99■■■□□ 2.07
SF3A1-202ENST00000411423 C1orf167Q5SNV9 1468 aa27.97■■■□□ 2.07
SF3A1-202ENST00000411423 DDX17Q92841 729 aaKnown RBP27.95■■■□□ 2.06
SF3A1-202ENST00000411423 LAMC1P11047 1609 aa27.95■■■□□ 2.06
SF3A1-202ENST00000411423 NHSL1Q5SYE7 1610 aa27.95■■■□□ 2.06
SF3A1-202ENST00000411423 KDM2AQ9Y2K7 1162 aa27.94■■■□□ 2.06
SF3A1-202ENST00000411423 DCAF11Q8TEB1 546 aa27.93■■■□□ 2.06
SF3A1-202ENST00000411423 JCADQ9P266 1359 aa27.93■■■□□ 2.06
SF3A1-202ENST00000411423 ADGRB1O14514 1584 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms