RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TNNT2P45379 298 aaPredicted RBP27.34■■□□□ 1.97
CTCF-202ENST00000401394 WDR7Q9Y4E6 1490 aa27.33■■□□□ 1.97
CTCF-202ENST00000401394 PRDM15P57071 1507 aaPredicted RBP27.33■■□□□ 1.96
CTCF-202ENST00000401394 PANK1Q8TE04 598 aa27.32■■□□□ 1.96
CTCF-202ENST00000401394 TNNQ9UQP3 1299 aa27.31■■□□□ 1.96
CTCF-202ENST00000401394 RRP7AQ9Y3A4 280 aaKnown RBP27.3■■□□□ 1.96
CTCF-202ENST00000401394 COG6Q9Y2V7 657 aa27.29■■□□□ 1.96
CTCF-202ENST00000401394 CDC42BPBQ9Y5S2 1711 aa27.29■■□□□ 1.96
CTCF-202ENST00000401394 ARHGAP5Q13017 1502 aa27.27■■□□□ 1.96
CTCF-202ENST00000401394 BCL2L13Q9BXK5 485 aa27.26■■□□□ 1.95
CTCF-202ENST00000401394 ARXQ96QS3 562 aa27.25■■□□□ 1.95
CTCF-202ENST00000401394 SLKQ9H2G2 1235 aaPredicted RBP27.25■■□□□ 1.95
CTCF-202ENST00000401394 ARHGEF5Q12774 1597 aa27.22■■□□□ 1.95
CTCF-202ENST00000401394 AFAP1Q8N556 730 aa27.22■■□□□ 1.95
CTCF-202ENST00000401394 CARD14Q9BXL6 1004 aa27.22■■□□□ 1.95
CTCF-202ENST00000401394 SENP3Q9H4L4 574 aaPredicted RBP27.22■■□□□ 1.95
CTCF-202ENST00000401394 USP19O94966 1318 aa27.21■■□□□ 1.95
CTCF-202ENST00000401394 MYO5CQ9NQX4 1742 aa27.21■■□□□ 1.95
CTCF-202ENST00000401394 CFAP70Q5T0N1 1121 aa27.21■■□□□ 1.95
CTCF-202ENST00000401394 TTC37Q6PGP7 1564 aa27.2■■□□□ 1.94
CTCF-202ENST00000401394 SPRYD3Q8NCJ5 442 aa27.19■■□□□ 1.94
CTCF-202ENST00000401394 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.18■■□□□ 1.94
CTCF-202ENST00000401394 SHROOM2Q13796 1616 aa27.18■■□□□ 1.94
CTCF-202ENST00000401394 POGKQ9P215 609 aa27.18■■□□□ 1.94
CTCF-202ENST00000401394 CLUAP1Q96AJ1 413 aa27.17■■□□□ 1.94
CTCF-202ENST00000401394 CANXP27824 592 aaKnown RBP27.17■■□□□ 1.94
CTCF-202ENST00000401394 TRMT2AQ8IZ69 625 aaKnown RBP27.17■■□□□ 1.94
CTCF-202ENST00000401394 RSPH4AQ5TD94 716 aa27.16■■□□□ 1.94
CTCF-202ENST00000401394 EIF5BO60841 1220 aaKnown RBP27.12■■□□□ 1.93
CTCF-202ENST00000401394 RLBP1P12271 317 aa27.12■■□□□ 1.93
CTCF-202ENST00000401394 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.11■■□□□ 1.935e-8■■■■■ 28.6
CTCF-202ENST00000401394 PREX2Q70Z35 1606 aa27.11■■□□□ 1.93
CTCF-202ENST00000401394 TRAPPC8Q9Y2L5 1435 aa27.1■■□□□ 1.93
CTCF-202ENST00000401394 NKTRP30414 1462 aaKnown RBP27.08■■□□□ 1.93
CTCF-202ENST00000401394 INSRP06213 1382 aa27.08■■□□□ 1.93
CTCF-202ENST00000401394 WWC1Q8IX03 1113 aa27.08■■□□□ 1.93
CTCF-202ENST00000401394 PCDHB15Q9Y5E8 787 aa27.08■■□□□ 1.93
CTCF-202ENST00000401394 ADGRF5Q8IZF2 1346 aa27.08■■□□□ 1.93
CTCF-202ENST00000401394 UNC13BO14795 1591 aa27.08■■□□□ 1.92
CTCF-202ENST00000401394 E9PSI1 815 aa27.06■■□□□ 1.92
CTCF-202ENST00000401394 ASXL1Q8IXJ9 1541 aa27.06■■□□□ 1.92
CTCF-202ENST00000401394 CENPJQ9HC77 1338 aaPredicted RBP27.06■■□□□ 1.92
CTCF-202ENST00000401394 ERCC6L2Q5T890 1561 aa27.03■■□□□ 1.92
CTCF-202ENST00000401394 IQGAP3Q86VI3 1631 aa27.03■■□□□ 1.92
CTCF-202ENST00000401394 SLC12A5Q9H2X9 1139 aa27.02■■□□□ 1.92
CTCF-202ENST00000401394 EIF3AQ14152 1382 aaKnown RBP27.01■■□□□ 1.91
CTCF-202ENST00000401394 CHGAP10645 457 aaKnown RBP27.01■■□□□ 1.91
CTCF-202ENST00000401394 SCAF11Q99590 1463 aaKnown RBP27■■□□□ 1.91
CTCF-202ENST00000401394 EIF2AK4Q9P2K8 1649 aaKnown RBP27■■□□□ 1.91
CTCF-202ENST00000401394 LAMC1P11047 1609 aa26.99■■□□□ 1.91
CTCF-202ENST00000401394 UGGT1Q9NYU2 1555 aa26.99■■□□□ 1.91
CTCF-202ENST00000401394 PIK3C2GO75747 1445 aa26.99■■□□□ 1.91
CTCF-202ENST00000401394 CDCA8Q53HL2 280 aa26.99■■□□□ 1.91
CTCF-202ENST00000401394 MADDQ8WXG6 1647 aa26.99■■□□□ 1.91
CTCF-202ENST00000401394 KIF3BO15066 747 aa26.98■■□□□ 1.91
CTCF-202ENST00000401394 TRAK1Q9UPV9 953 aa26.98■■□□□ 1.91
CTCF-202ENST00000401394 CLASP1Q7Z460 1538 aa26.98■■□□□ 1.91
CTCF-202ENST00000401394 NUTM2DQ5VT03 806 aaPredicted RBP26.98■■□□□ 1.91
CTCF-202ENST00000401394 SPAG9O60271 1321 aaKnown RBP26.97■■□□□ 1.91
CTCF-202ENST00000401394 ATP10AO60312 1499 aa26.97■■□□□ 1.91
CTCF-202ENST00000401394 ABCC2Q92887 1545 aa26.97■■□□□ 1.91
CTCF-202ENST00000401394 TCP11L2Q8N4U5 519 aa26.97■■□□□ 1.91
CTCF-202ENST00000401394 TMEM132EQ6IEE7 984 aa26.96■■□□□ 1.91
CTCF-202ENST00000401394 GZF1Q9H116 711 aaPredicted RBP26.96■■□□□ 1.91
CTCF-202ENST00000401394 RNF17Q9BXT8 1623 aaKnown RBP26.96■■□□□ 1.91
CTCF-202ENST00000401394 EFCAB2Q5VUJ9 269 aa26.96■■□□□ 1.91
CTCF-202ENST00000401394 MAST1Q9Y2H9 1570 aa26.95■■□□□ 1.91
CTCF-202ENST00000401394 RARSP54136 660 aaKnown RBP26.95■■□□□ 1.91
CTCF-202ENST00000401394 PDZRN3Q9UPQ7 1066 aa26.95■■□□□ 1.91
CTCF-202ENST00000401394 DUOX2Q9NRD8 1548 aa26.95■■□□□ 1.9
CTCF-202ENST00000401394 MORC1Q86VD1 984 aa26.92■■□□□ 1.9
CTCF-202ENST00000401394 CGNL1Q0VF96 1302 aa26.92■■□□□ 1.9
CTCF-202ENST00000401394 MYOM1P52179 1685 aa26.92■■□□□ 1.9
CTCF-202ENST00000401394 PDE3AQ14432 1141 aa26.91■■□□□ 1.9
CTCF-202ENST00000401394 TBC1D2Q9BYX2 928 aa26.91■■□□□ 1.9
CTCF-202ENST00000401394 IQGAP1P46940 1657 aa26.9■■□□□ 1.9
CTCF-202ENST00000401394 ERVK-7P63135 1459 aa26.9■■□□□ 1.9
CTCF-202ENST00000401394 TSR2Q969E8 191 aaKnown RBP26.9■■□□□ 1.9
CTCF-202ENST00000401394 SYNMO15061 1565 aa26.89■■□□□ 1.9
CTCF-202ENST00000401394 MTHFSP49914 203 aa26.88■■□□□ 1.89
CTCF-202ENST00000401394 CLTCL1P53675 1640 aa26.88■■□□□ 1.89
CTCF-202ENST00000401394 SAFB2Q14151 953 aaKnown RBP eCLIP26.88■■□□□ 1.89
CTCF-202ENST00000401394 NLRP1Q9C000 1473 aa26.86■■□□□ 1.89
CTCF-202ENST00000401394 ANTXR1Q9H6X2 564 aa26.86■■□□□ 1.89
CTCF-202ENST00000401394 RRAGDQ9NQL2 400 aaPredicted RBP26.85■■□□□ 1.89
CTCF-202ENST00000401394 PLXNC1O60486 1568 aa26.85■■□□□ 1.89
CTCF-202ENST00000401394 NSD3Q9BZ95 1437 aa26.84■■□□□ 1.89
CTCF-202ENST00000401394 PLCH2O75038 1416 aa26.83■■□□□ 1.89
CTCF-202ENST00000401394 MFAP1P55081 439 aaKnown RBP26.82■■□□□ 1.88
CTCF-202ENST00000401394 PANK2Q9BZ23 570 aa26.82■■□□□ 1.88
CTCF-202ENST00000401394 MAPK8IP3Q9UPT6 1336 aa26.81■■□□□ 1.88
CTCF-202ENST00000401394 UHRF1BP1LA0JNW5 1464 aa26.81■■□□□ 1.88
CTCF-202ENST00000401394 BECN1Q14457 450 aa26.8■■□□□ 1.88
CTCF-202ENST00000401394 RUNDC1Q96C34 613 aa26.8■■□□□ 1.88
CTCF-202ENST00000401394 TBC1D32Q96NH3 1257 aa26.8■■□□□ 1.88
CTCF-202ENST00000401394 U2AF1L5P0DN76 240 aaPredicted RBP26.79■■□□□ 1.88
CTCF-202ENST00000401394 U2AF1Q01081 240 aaKnown RBP eCLIP26.79■■□□□ 1.88
CTCF-202ENST00000401394 NPC1L1Q9UHC9 1359 aa26.78■■□□□ 1.88
CTCF-202ENST00000401394 SCAPERQ9BY12 1400 aa26.78■■□□□ 1.88
CTCF-202ENST00000401394 ZCCHC11Q5TAX3 1644 aaKnown RBP26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms