RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ALKQ9UM73 1620 aa32.83■■■□□ 2.85
CCDC28B-201ENST00000373602 SCAF1Q9H7N4 1312 aaKnown RBP32.82■■■□□ 2.84
CCDC28B-201ENST00000373602 PLEKHG1Q9ULL1 1385 aa32.82■■■□□ 2.84
CCDC28B-201ENST00000373602 HFM1A2PYH4 1435 aa32.81■■■□□ 2.84
CCDC28B-201ENST00000373602 KCNA6P17658 529 aa32.81■■■□□ 2.84
CCDC28B-201ENST00000373602 PPP1R15AO75807 674 aaPredicted RBP32.79■■■□□ 2.84
CCDC28B-201ENST00000373602 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.79■■■□□ 2.84
CCDC28B-201ENST00000373602 BCANQ96GW7 911 aa32.79■■■□□ 2.84
CCDC28B-201ENST00000373602 SPHKAPQ2M3C7 1700 aa32.76■■■□□ 2.83
CCDC28B-201ENST00000373602 XIRP1Q702N8 1843 aaKnown RBP32.74■■■□□ 2.83
CCDC28B-201ENST00000373602 HSPA1LP34931 641 aa32.73■■■□□ 2.83
CCDC28B-201ENST00000373602 NWD1Q149M9 1564 aa32.72■■■□□ 2.83
CCDC28B-201ENST00000373602 SENP3Q9H4L4 574 aaPredicted RBP32.72■■■□□ 2.83
CCDC28B-201ENST00000373602 DISP3Q9P2K9 1392 aa32.71■■■□□ 2.83
CCDC28B-201ENST00000373602 TMEM94Q12767 1356 aa32.7■■■□□ 2.82
CCDC28B-201ENST00000373602 NKTRP30414 1462 aaKnown RBP32.69■■■□□ 2.82
CCDC28B-201ENST00000373602 NUTM2DQ5VT03 806 aaPredicted RBP32.69■■■□□ 2.82
CCDC28B-201ENST00000373602 TBX22Q9Y458 520 aa32.69■■■□□ 2.82
CCDC28B-201ENST00000373602 PROSER2Q86WR7 435 aaPredicted RBP32.68■■■□□ 2.82
CCDC28B-201ENST00000373602 TRIM52Q96A61 297 aa32.68■■■□□ 2.82
CCDC28B-201ENST00000373602 ADAMTS13Q76LX8 1427 aa32.66■■■□□ 2.82
CCDC28B-201ENST00000373602 TRPM2O94759 1503 aa32.65■■■□□ 2.82
CCDC28B-201ENST00000373602 CHD2O14647 1828 aaKnown RBP32.63■■■□□ 2.81
CCDC28B-201ENST00000373602 CLTCL1P53675 1640 aa32.62■■■□□ 2.81
CCDC28B-201ENST00000373602 DIP2AQ14689 1571 aa32.62■■■□□ 2.81
CCDC28B-201ENST00000373602 RBM33Q96EV2 1170 aaKnown RBP32.6■■■□□ 2.81
CCDC28B-201ENST00000373602 SLC4A1APQ9BWU0 796 aaKnown RBP32.59■■■□□ 2.81
CCDC28B-201ENST00000373602 ZNF326Q5BKZ1 582 aaKnown RBP32.58■■■□□ 2.81
CCDC28B-201ENST00000373602 PIK3R4Q99570 1358 aa32.58■■■□□ 2.81
CCDC28B-201ENST00000373602 FAM135BQ49AJ0 1406 aa32.51■■■□□ 2.8
CCDC28B-201ENST00000373602 SETBP1Q9Y6X0 1596 aa32.51■■■□□ 2.79
CCDC28B-201ENST00000373602 MSH6P52701 1360 aa32.51■■■□□ 2.79
CCDC28B-201ENST00000373602 KIF1BO60333 1816 aa32.51■■■□□ 2.79
CCDC28B-201ENST00000373602 NRXN3Q9Y4C0 1643 aa32.5■■■□□ 2.79
CCDC28B-201ENST00000373602 NEXMIFQ5QGS0 1516 aa32.5■■■□□ 2.79
CCDC28B-201ENST00000373602 NCOA3Q9Y6Q9 1424 aa32.49■■■□□ 2.79
CCDC28B-201ENST00000373602 ILDR2Q71H61 639 aa32.48■■■□□ 2.79
CCDC28B-201ENST00000373602 PTPRUQ92729 1446 aa32.46■■■□□ 2.79
CCDC28B-201ENST00000373602 AMOTL2Q9Y2J4 779 aa32.45■■■□□ 2.79
CCDC28B-201ENST00000373602 MED1Q15648 1581 aaPredicted RBP32.42■■■□□ 2.78
CCDC28B-201ENST00000373602 FOXD1Q16676 465 aa32.42■■■□□ 2.78
CCDC28B-201ENST00000373602 MPHOSPH9Q99550 1183 aa32.41■■■□□ 2.78
CCDC28B-201ENST00000373602 SLAIN2Q9P270 581 aa32.39■■■□□ 2.78
CCDC28B-201ENST00000373602 ROBO1Q9Y6N7 1651 aa32.39■■■□□ 2.78
CCDC28B-201ENST00000373602 METP08581 1390 aa32.38■■■□□ 2.77
CCDC28B-201ENST00000373602 RPGRIP1LQ68CZ1 1315 aa32.38■■■□□ 2.77
CCDC28B-201ENST00000373602 ACIN1Q9UKV3 1341 aaKnown RBP32.38■■■□□ 2.77
CCDC28B-201ENST00000373602 SETD5Q9C0A6 1442 aa32.37■■■□□ 2.77
CCDC28B-201ENST00000373602 VGFO15240 615 aaPredicted RBP32.37■■■□□ 2.77
CCDC28B-201ENST00000373602 C14orf37Q86TY3 774 aa32.37■■■□□ 2.77
CCDC28B-201ENST00000373602 XRN1Q8IZH2 1706 aaKnown RBP32.37■■■□□ 2.77
CCDC28B-201ENST00000373602 C19orf44Q9H6X5 657 aa32.35■■■□□ 2.77
CCDC28B-201ENST00000373602 CCDC144AA2RUR9 1427 aa32.32■■■□□ 2.76
CCDC28B-201ENST00000373602 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.31■■■□□ 2.76
CCDC28B-201ENST00000373602 CADPS2Q86UW7 1296 aa32.31■■■□□ 2.76
CCDC28B-201ENST00000373602 PPLO60437 1756 aa32.28■■■□□ 2.76
CCDC28B-201ENST00000373602 ATF3P18847 181 aa32.28■■■□□ 2.76
CCDC28B-201ENST00000373602 SPATA31E1Q6ZUB1 1445 aa32.25■■■□□ 2.75
CCDC28B-201ENST00000373602 RAB3GAP2Q9H2M9 1393 aa32.24■■■□□ 2.75
CCDC28B-201ENST00000373602 SETD1AO15047 1707 aaKnown RBP32.24■■■□□ 2.75
CCDC28B-201ENST00000373602 DCCP43146 1447 aa32.23■■■□□ 2.75
CCDC28B-201ENST00000373602 SOCS7O14512 581 aa32.21■■■□□ 2.75
CCDC28B-201ENST00000373602 PHF23Q9BUL5 403 aaPredicted RBP32.2■■■□□ 2.75
CCDC28B-201ENST00000373602 RGL3Q3MIN7 710 aa32.19■■■□□ 2.74
CCDC28B-201ENST00000373602 PHLPP1O60346 1717 aa32.18■■■□□ 2.74
CCDC28B-201ENST00000373602 ADGRL3Q9HAR2 1447 aa32.17■■■□□ 2.74
CCDC28B-201ENST00000373602 ANKRD30BQ9BXX2 1392 aa32.16■■■□□ 2.74
CCDC28B-201ENST00000373602 PTCH1Q13635 1447 aa32.16■■■□□ 2.74
CCDC28B-201ENST00000373602 ADGRF5Q8IZF2 1346 aa32.15■■■□□ 2.74
CCDC28B-201ENST00000373602 PRAG1Q86YV5 1406 aa32.15■■■□□ 2.74
CCDC28B-201ENST00000373602 IFT172Q9UG01 1749 aa32.12■■■□□ 2.73
CCDC28B-201ENST00000373602 COL16A1Q07092 1604 aaPredicted RBP32.12■■■□□ 2.73
CCDC28B-201ENST00000373602 MST1RQ04912 1400 aa32.12■■■□□ 2.73
CCDC28B-201ENST00000373602 ROBO2Q9HCK4 1378 aa32.12■■■□□ 2.73
CCDC28B-201ENST00000373602 AHDC1Q5TGY3 1603 aaPredicted RBP32.11■■■□□ 2.73
CCDC28B-201ENST00000373602 BRINP3Q76B58 766 aa32.11■■■□□ 2.73
CCDC28B-201ENST00000373602 JCADQ9P266 1359 aa32.1■■■□□ 2.73
CCDC28B-201ENST00000373602 NALCNQ8IZF0 1738 aa32.1■■■□□ 2.73
CCDC28B-201ENST00000373602 HRCP23327 699 aa32.07■■■□□ 2.72
CCDC28B-201ENST00000373602 PIK3C2GO75747 1445 aa32.04■■■□□ 2.72
CCDC28B-201ENST00000373602 RGS17Q9UGC6 210 aaPredicted RBP32.04■■■□□ 2.72
CCDC28B-201ENST00000373602 ASXL1Q8IXJ9 1541 aa32.04■■■□□ 2.72
CCDC28B-201ENST00000373602 LRPPRCP42704 1394 aaKnown RBP31.98■■■□□ 2.71
CCDC28B-201ENST00000373602 TECPR2O15040 1411 aa31.98■■■□□ 2.71
CCDC28B-201ENST00000373602 C1orf167Q5SNV9 1468 aa31.97■■■□□ 2.71
CCDC28B-201ENST00000373602 NRXN1Q9ULB1 1477 aa31.97■■■□□ 2.71
CCDC28B-201ENST00000373602 NHSL1Q5SYE7 1610 aa31.96■■■□□ 2.71
CCDC28B-201ENST00000373602 MYOM2P54296 1465 aa31.96■■■□□ 2.71
CCDC28B-201ENST00000373602 SPATA31A6Q5VVP1 1343 aa31.96■■■□□ 2.71
CCDC28B-201ENST00000373602 TMEM132EQ6IEE7 984 aa31.95■■■□□ 2.71
CCDC28B-201ENST00000373602 ABCC11Q96J66 1382 aa31.94■■■□□ 2.7
CCDC28B-201ENST00000373602 STK26Q9P289 416 aa31.94■■■□□ 2.7
CCDC28B-201ENST00000373602 SHPRHQ149N8 1683 aa31.93■■■□□ 2.7
CCDC28B-201ENST00000373602 C14orf93Q9H972 538 aaKnown RBP31.93■■■□□ 2.7
CCDC28B-201ENST00000373602 KNDC1Q76NI1 1749 aa31.9■■■□□ 2.7
CCDC28B-201ENST00000373602 YTHDC2Q9H6S0 1430 aaKnown RBP31.9■■■□□ 2.7
CCDC28B-201ENST00000373602 LRP6O75581 1613 aa31.89■■■□□ 2.7
CCDC28B-201ENST00000373602 WAPLQ7Z5K2 1190 aa31.88■■■□□ 2.69
CCDC28B-201ENST00000373602 DDX17Q92841 729 aaKnown RBP31.88■■■□□ 2.69
CCDC28B-201ENST00000373602 CDC42BPGQ6DT37 1551 aa31.87■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms